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Introduction
Publications
Publications (187)
Wood density is a critical control on tree biomass, so poor understanding of its spatial variation can lead to large and systematic errors in forest biomass estimates and carbon maps. The need to understand how and why wood density varies is especially critical in tropical America where forests have exceptional species diversity and spatial turnove...
Plants cope with the environment by displaying large phenotypic variation. Two spectra of global plant form and function have been identified: a size spectrum from small to tall species with increasing stem tissue density, leaf size, and seed mass; a leaf economics spectrum reflecting slow to fast returns on investments in leaf nutrients and carbon...
Understanding how the traits of lineages are related to diversification is key for elucidating the origin of variation in species richness. Here, we test whether traits are related to species richness among lineages of trees from all major biogeographical settings of the lowland wet tropics. We explore whether variation in mortality rate, breeding...
Rates of tree mortality are increasing globally, with implications for forests and climate. Yet, how and why these trends vary globally remain unknown. Developing a comprehensive assessment of global tree mortality will require systematically integrating data from ground-based long-term forest monitoring with large-scale remote sensing. We surveyed...
Rates of tree mortality are increasing globally, with implications for forests and climate. Yet, how and why these trends vary globally remain unknown. Developing a comprehensive assessment of global tree mortality will require systematically integrating data from ground-based long-term forest monitoring with large-scale remote sensing. We surveyed...
Leaf and wood functional traits of trees are related to growth, reproduction, and survival, but the degree of phylogenetic conservatism in these relationships is largely unknown. In this study, we describe the variability of strategies involving leaf, wood and demographic characteristics for tree genera distributed across the Amazon Region, and qua...
Tropical biodiversity is undergoing unprecedented changes due to the hydrological cycle intensification, characterized by more intense droughts and wet seasons. This raises concerns about the resilience of animal and plant communities to such extremes and the existence of potential refugia—areas theorized to safeguard biological communities from ad...
Background and aims
Shallow water table (WT) forests (representing ~ 50% of Amazonian land areas) exhibit different characteristics and functioning compared to the more widely studied deep WT forests. However, less is understood about the determinants of biomass allocation to aerial and belowground components in shallow WT forests. Here we investig...
Tree growth and longevity trade-offs fundamentally shape the terrestrial carbon balance. Yet, we lack a unified understanding of how such trade-offs vary across the world’s forests. By mapping life history traits for a wide range of species across the Americas, we reveal considerable variation in life expectancies from 10 centimeters in diameter (r...
We describe the geographical variation in tree species composition across Amazonian forests and show how environmental conditions are associated with species turnover. Our analyses are based on 2023 forest inventory plots (1 ha) that provide abundance data for a total of 5188 tree species. Within-plot species composition reflected both local enviro...
Las fuertes sequías en la Amazonía han ido aumentando en frecuencia e intensidad, de cuatro en un siglo , a cuatro en menos de 25 años, en sintonía con el aumento de la deforestación y el calentamiento global. La sinergia de sequías, deforestación, incendios y degradación forestal, tiene el potencial de llevar a la Amazonía a un punto de no retorno...
Background and Aims
Lianas have higher relative abundance and biomass in drier seasonal forests than rainforests, but whether this difference is associated with their hydraulic strategies is unclear. Here, we investigate whether lianas of seasonally dry forests are safer and more efficient in water transport than rainforest ones, explaining liana a...
Amazonia’s floodplain system is the largest and most biodiverse on Earth. Although forests are crucial to the ecological integrity of floodplains, our understanding of their species composition and how this may differ from surrounding forest types is still far too limited, particularly as changing inundation regimes begin to reshape floodplain tree...
Aim
Amazonia hosts more tree species from numerous evolutionary lineages, both young and ancient, than any other biogeographic region. Previous studies have shown that tree lineages colonized multiple edaphic environments and dispersed widely across Amazonia, leading to a hypothesis, which we test, that lineages should not be strongly associated wi...
Background and Aims
Shallow water table (WT) forests (representing ~ 50% of Amazonian land areas) exhibit different characteristics and functioning compared to the more widely studied deep WT forests. However, less is understood about the determinants of biomass structure and allocation in shallow WT forests. Here we investigate how limitation impo...
Trees structure the Earth’s most biodiverse ecosystem, tropical forests. The vast number of tree species presents a formidable challenge to understanding these forests, including their response to environmental change, as very little is known about most tropical tree species. A focus on the common species may circumvent this challenge. Here we inve...
ARTICLE Mapping density, diversity and species-richness of the Amazon tree flora Using 2.046 botanically-inventoried tree plots across the largest tropical forest on Earth, we mapped tree species-diversity and tree species-richness at 0.1-degree resolution, and investigated drivers for diversity and richness. Using only location, stratified by fore...
Indigenous societies are known to have occupied the Amazon basin for more than 12,000 years, but the scale of their influence on Amazonian forests remains uncertain. We report the discovery, using LIDAR (light detection and ranging) information from across the basin, of 24 previously undetected
pre-Columbian earthworks beneath the forest canopy. Mo...
The tropical forest carbon sink is known to be drought sensitive, but it is unclear which forests are the most vulnerable to extreme events. Forests with hotter and drier baseline conditions may be protected by prior adaptation, or more vulnerable because they operate closer to physiological limits. Here we report that forests in drier South Americ...
Graphical abstract Highlights d Ecological metadata were compiled for 7,694 sites across the Brazilian Amazon d Accessibility and proximity to research facilities influenced research probability d Knowledge gaps are greater in uplands than in wetlands and aquatic habitats d Undersampled areas overlap predicted hotspots of climate change and defores...
Biodiversity loss is one of the main challenges of our time, and attempts to address it require a clear understanding of how ecological communities respond to environmental change across time and space. While the increasing availability of global databases on ecological communities has advanced our knowledge of biodiversity sensitivity to environme...
• As pesquisas ecológicas e a compilação e curadoria de dados científicos
são atividades fundamentais para a compreensão das mudanças na biodiversidade da Amazônia;
• As pesquisas ecológicas ainda estão concentradas em locais mais acessíveis e próximos às instituições de pesquisa;
• A Amazônia é a região do país que menos recebe investimento para p...
In a time of rapid global change, the question of what determines patterns in species abundance distribution remains a priority for understanding the complex dynamics of ecosystems. The constrained maximization of information entropy provides a framework for the understanding of such complex systems dynamics by a quantitative analysis of important...
Lianas are increasing in relative abundance and biomass, mainly in seasonally dry forests, but it is unclear if this is associated with their hydraulic strategy. Here, we ask whether liana of seasonally dry forests are safer and more efficient in water transport than those of rainforest, which could explain liana distribution patterns and their rec...
Aim
To investigate the geographic patterns and ecological correlates in the geographic distribution of the most common tree dispersal modes in Amazonia (endozoochory, synzoochory, anemochory and hydrochory). We examined if the proportional abundance of these dispersal modes could be explained by the availability of dispersal agents (disperser‐avail...
Soil hydrology, nutrient availability, and forest disturbance determine the variation of tropical tree species composition locally. However, most habitat filtering is explained by tree species' hydraulic traits along the hydrological gradient. We asked whether these patterns apply to lianas. At the community level, we investigated whether hydrologi...
Plant distribution patterns may indicate habitat specialization either by closely related species with conserved traits or by phylogenetically distant species with converging traits. Lianas represent a large proportion of the overall tropical species diversity and abundance. Despite their importance, little is known about the relationship between h...
Amazonia is extremely biodiverse, but the mechanisms for the origin of this diversity are still under debate. We propose a diversification model for Amazonia based on the interplay of intrinsic clade functional traits, habitat associations and past geological events, using as a model group the species-rich Neotropical family Marantaceae. Our result...
Tropical forest function is of global significance to climate change responses, and critically determined by water availability patterns. Groundwater is tightly related to soil water through the water table depth (WT), but historically neglected in ecological studies. Shallow WT forests (WT < 5 m) are underrepresented in forest research networks an...
Amazonia is extremely biodiverse, but the mechanisms for the origin of this diversity are still under debate. We propose a diversification model for Amazonia based on the interplay of intrinsic clade functional traits, habitat associations and past geological events, using as a model group the species-rich Neotropical family Marantaceae. Our result...
To determine the effect of rivers, environmental conditions, and isolation by distance on the distribution of species in Amazonia. Location: Brazilian Amazonia. Time period: Current. Major taxa studied: Birds, fishes, bats, ants, termites, butterflies, ferns ? lyco-phytes, gingers and palms. We compiled a unique dataset of biotic and abiotic inform...
Soil hydrology, nutrient availability and forest disturbance determine the variation of tropical tree species composition locally. However, most habitat filtering is explained by tree species' hydraulic traits along the hydrological gradient. We asked whether these patterns apply to lianas. At the community level, we investigated: (i) whether the h...
Addressing intraspecific variability of functional traits helps understand how climate change might influence the distribution of organismal traits across environments, but is notably understudied in the Amazon, especially for plant-hydraulic traits that are often used to project drought responses.
We quantified intraspecific trait variability of l...
The study of plant species and trait distributions can provide answers to many of the ecological challenges of our times, from climate change to the biodiversity crisis. Although traits are classically measured at the species level, understanding intraspecific variation is necessary to determine the type of response species will have to climate cha...
The forests of Amazonia are among the most biodiverse plant communities on Earth. Given the immediate threats posed by climate and land-use change, an improved understanding of how this extraordinary biodiversity is spatially organized is urgently required to develop effective conservation strategies. Most Amazonian tree species are extremely rare...
Tropical forests are the most diverse and productive ecosystems on Earth. While better understanding of these forests is critical for our collective future, until quite recently efforts to measure and monitor them have been largely disconnected. Networking is essential to discover the answers to questions that transcend borders and the horizons of...
Tropical forests are the most diverse and productive ecosystems on Earth. While better understanding of these forests is critical for our collective future, until quite recently efforts to measure and monitor them have been largely disconnected. Networking is essential to discover the answers to questions that transcend borders and the horizons of...
In a time of rapid global change, the question of what determines patterns in species abundance distribution remains a priority for understanding the complex dynamics of ecosystems. The constrained maximization of information entropy provides a framework for the understanding of such complex systems dynamics by a quantitative analysis of important...
1. The Balbina hydropower dam in the Central Amazon basin, established in the Uatumã River in the 1980s, is emblematic for its socio-environmental disaster. Its environmental impacts go far beyond the reservoir and dam, however, affecting the floodplain forests (igapó) in the downstream area (dam shadow), which have been assessed using a transdisci...
Climate change is a major threat to biodiversity. Rainfall patterns over recent decades have changed and extreme events are intensifying. These are expected to affect the hydrological dynamics and structure of forest streams in the Amazon basin, which strongly depend on the local rainfall regime, with potential consequences for local fish assemblag...
There is a consensus about negative impacts of droughts in Amazonia. Yet, extreme wet episodes, which are becoming as severe and frequent as droughts, are overlooked and their impacts remain poorly understood. Moreover, drought reports are mostly based on forests over a deep water table (DWT), which may be particularly sensitive to dry conditions....
To determine the effect of rivers, environmental conditions, and isolation by distance on the distribution of species in Amazonia. Location: Brazilian Amazonia. Time period: Current. Major taxa studied: Birds, fishes, bats, ants, termites, butterflies, ferns ? lyco-phytes, gingers and palms. We compiled a unique dataset of biotic and abiotic inform...
Tropical biomes are the most diverse plant communities on Earth, and quantifying this diversity at large spatial scales is vital for many purposes. As macroecological approaches proliferate, the taxonomic uncertainties in species occurrence data are easily neglected and can lead to spurious findings in downstream analyses. Here, we argue that techn...
Aim
Palms are an iconic, diverse and often abundant component of tropical ecosystems that provide many ecosystem services. Being monocots, tree palms are evolutionarily, morphologically and physiologically distinct from other trees, and these differences have important consequences for ecosystem services (e.g., carbon sequestration and storage) and...
Aim
Palms are an iconic, diverse and often abundant component of tropical ecosystems that provide many ecosystem services. Being monocots, tree palms are evolutionarily, morphologically and physiologically distinct from other trees, and these differences have important consequences for ecosystem services (e.g., carbon sequestration and storage) and...
Aim: Palms are an iconic, diverse and often abundant component of tropical ecosystems that provide many ecosystem services. Being monocots, tree palms are evolutionarily, morphologically and physiologically distinct from other trees, and these differences have important consequences for ecosystem services (e.g., carbon sequestration and storage) an...
Amazonian forests are extraordinarily diverse, but the estimated species richness is very much debated. Here, we apply an ensemble of parametric estimators and a novel technique that includes conspecific spatial aggregation to an extended database of forest plots with up-to-date taxonomy. We show that the species abundance distribution of Amazonia...
Amazonian forests are extraordinarily diverse, but the estimated species richness is very much debated. Here, we apply an ensemble of parametric estimators and a novel technique that includes conspecific spatial aggregation to an extended database of forest plots with up-to-date taxonomy. We show that the species abundance distribution of Amazonia...
Amazonian forests are extraordinarily diverse, but the estimated species richness is very much debated. Here, we apply an ensemble of parametric estimators and a novel technique that includes conspecific spatial aggregation to an extended database of forest plots with up-to-date taxonomy. We show that the species abundance distribution of Amazonia...
Amazonian forests are extraordinarily diverse, but the estimated species richness is very much debated. Here, we apply an ensemble of parametric estimators and a novel technique that includes conspecific
spatial aggregation to an extended database of forest plots with up-to-date taxonomy. We show that the species abundance distribution of Amazonia...
Amazonian forests are extraordinarily diverse, but the estimated species richness is very much debated. Here, we apply an ensemble of parametric estimators and a novel technique that includes conspecific spatial aggregation to an extended database of forest plots with up-to-date taxonomy. We show that the species abundance distribution of Amazonia...
Central Amazon has been subjected to a higher frequency of extreme climatic events, such as very dry or very wet years, in the last decades. Here, we report a 20-year monitoring of 6 biological groups over 100 km2
of typical terra-firme forest at Ducke Forest Reserve, Manaus. Most assemblages had a decrease in abundance (9 – 35 %) and richness (8 –...
The sensitivity of tropical forest carbon to climate is a key uncertainty in predicting global climate change. Although short-term drying and warming are known to affect forests, it is unknown if such effects translate into long-term responses. Here, we analyze 590 permanent plots measured across the tropics to derive the equilibrium climate contro...
The sensitivity of tropical forest carbon to climate is a key uncertainty in predicting global climate change. Although short-term drying and warming are known to affect forests, it is unknown if such effects translate into long-term responses. Here, we analyze 590 permanent plots measured across the tropics to derive the equilibrium climate contro...
Aims
Assessment of the future of biodiversity under climate change has been based on climate-only models. We investigated the effects of including soil information when predicting future suitable areas for selected plant species in Amazonia.
Methods
We modelled current and future suitable habitats for 35 plant species and compared results of clima...
Mega hydroelectric dams cause loss of habitat for many species and lead to local or regional extinction. Despite these dire facts, little is known about the impact of these mega-dams on Amazonia. Using palms as a model, we investigated this question by sampling 26 1-ha plots distributed in the influence areas of the Jirau mega-dam in southwestern B...
AimsThe extent and persistence of pre-Columbian human legacies in old-growth Amazonian forests are still controversial, partly because modern societies re-occupied old settlements, challenging the distinction between pre- and post-Columbian legacies. Here, we compared the effects of pre-Columbian vs. recent landscape domestication processes on soil...
The intensity and frequency of severe droughts in the Amazon region have increased in the recent decades. These extreme events are associated with changes in forest dynamics, biomass and floristic composition. However, most studies of drought response have focused on upland forests with deep water tables, which may be especially sensitive to drough...
Amazonian forests are extraordinarily diverse, but the estimated species richness is very much debated. Here, we apply an ensemble of parametric estimators and a novel technique that includes conspecific spatial aggregation to an extended database of forest plots with up-to-date taxonomy. We show that the species abundance distribution of Amazonia...
Tropical forests are known for their high diversity. Yet, forest patches do occur in the tropics where a single tree species is dominant. Such “monodominant” forests are known from all of the main tropical regions. For Amazonia, we sampled the occurrence of monodominance in a massive, basin-wide database of forest-inventory plots from the Amazon Tr...
Tropical forests are known for their high diversity. Yet, forest patches do occur in the tropics where a single tree species is dominant. Such “monodominant” forests are known from all of the main tropical regions. For Amazonia, we sampled the occurrence of monodominance in a massive, basin-wide database of forest-inventory plots from the Amazon Tr...
Tropical forests are known for their high diversity. Yet, forest patches do occur in the tropics where a single tree species is dominant. Such “monodominant” forests are known from all of the main tropical regions. For Amazonia, we sampled the occurrence of monodominance in a massive, basin-wide database of forest-inventory plots from the Amazon Tr...
Tropical forests are known for their high diversity. Yet, forest patches do occur in the tropics where a single tree species is dominant. Such “monodominant” forests are known from all of the main tropical regions. For Amazonia, we sampled the occurrence of monodominance in a massive, basin-wide database of forest-inventory plots from the Amazon Tr...
Tropical forests are known for their high diversity. Yet, forest patches do occur in the tropics where a single tree species is dominant. Such “monodominant” forests are known from all of the main tropical regions. For Amazonia, we sampled the occurrence of monodominance in a massive, basin-wide database of forest-inventory plots from the Amazon Tr...
Tropical forests are known for their high diversity. Yet, forest patches do occur in the tropics where a single tree species is dominant. Such “monodominant” forests are known from all of the main tropical regions. For Amazonia, we sampled the occurrence of monodominance in a massive, basin-wide database of forest-inventory plots from the Amazon Tr...
Tropical forests are known for their high diversity. Yet, forest patches do occur in the tropics where a single tree species is dominant. Such "monodominant" forests are known from all of the main tropical regions. For Amazonia, we sampled the occurrence of monodominance in a massive, basin-wide database of forest-inventory plots from the Amazon Tr...
Tropical forests are known for their high diversity. Yet, forest patches do occur in the tropics where a single tree species is dominant. Such "monodominant" forests are known from all of the main tropical regions. For Amazonia, we sampled the occurrence of monodominance in a massive, basin-wide database of forest-inventory plots from the Amazon Tr...
The recovery capacity and the successional pathways of tropical forests after anthropogenic disturbance vary considerably and may depend on prior land‐use type and intensity. It is still unclear if forests subjected to high intensity impact, such as periodically burned pastures, are capable of restoring their original functional properties.
This st...
Past human modification of forests has been documented in central, southwestern, and eastern Amazonia, especially near large rivers. Northwestern Amazonia, and interfluvial forests there in particular, are assumed to exhibit little past human impact. We analyzed soils and floristic structure and composition of interfluvial forests located in the Iç...
Past human modification of forests has been documented in central, southwestern, and eastern Amazonia, especially near large rivers. Northwestern Amazonia, and interfluvial forests there in particular, are assumed to exhibit little past human impact. We analyzed soils and floristic structure and composition of interfluvial forests located in the Iç...
Past human modification of forests has been documented in central, southwestern, and eastern Amazonia, especially near large rivers. Northwestern Amazonia, and interfluvial forests there in particular, are assumed to exhibit little past human impact. We analyzed soils and floristic structure and composition of interfluvial forests located in the Iç...
Understanding hydraulic strategies of Amazonian trees enables the prediction of their resilience to drought. Vulnerability to xylem embolism
(P50) is a functional trait that indicates species tolerance to drought and help to explain species distribution patterns across environmental
gradients. Here we evaluate how distinct precipitation regimes and...
Selective logging is one of the most prominent land uses in tropical forests and although it involves harvesting a limited number of trees, the impact on forest structure, composition and aboveground biomass can be significant. Although these impacts are well documented, what is little known is the extent to which selective logging affects tree flo...
Tree mortality appears to be increasing in moist tropical forests¹, with potentially important implications for global carbon and water cycles². Little is known about the drivers of tree mortality in these diverse forests, partly because long-term data are lacking³. The relative importance of climatic factors and species functional traits as driver...
Maps of environmental characteristics are needed to improve our understanding of species distributions and ecosystem dynamics. Despite the growing demand for digital environmental maps, scarcity of environmental field samples to be used as input data often constrains the accuracy of such maps, especially for soils.
We developed and tested a method...
Species distribution is strongly driven by local and global gradients in water availability but the underlying mechanisms are not clear. Vulnerability to xylem embolism (P50) is a key trait that indicates how species cope with drought and might explain plant distribution patterns across environmental gradients. Here we address its role on species s...
Notes S1 Pearson's correlation table between plant size, light, growth rates and traits across rainforest saplings.
Notes S2 Relationship between traits and growth rates using an individual‐ and a species‐based approach.
Notes S3 Discussion why some traits are more plastic than others.
Notes S4 Comparison between the mean and variation in trait...
The functional trait approach has, as a central tenet, that plant traits are functional and shape individual performance, but this has rarely been tested in the field. Here, we tested the individual‐based trait approach in a hyperdiverse Amazonian tropical rainforest and evaluated intraspecific variation in trait values, plant strategies at the ind...
Question
Have liana density and biomass increased in Central Amazonia over the last 10 years? Can a spatially explicit consideration of liana mortality and recruitment rates across hydro‐edaphic and tree turnover gradients at the landscape scale explain changes in liana density and biomass?
Location
Ducke Forest Reserve, located 26 kilometers nort...
Species distribution models (SDMs) are widely used in ecology and conservation. Presence-only SDMs such as MaxEnt frequently use natural history collections (NHCs) as occurrence data, given their huge numbers and accessibility. NHCs are often spatially biased which may generate inaccuracies in SDMs. Here, we test how the distribution of NHCs and Ma...
For millennia, Amazonian peoples have managed forest resources, modifying the natural environment in subtle and persistent ways. Legacies of past human occupation are striking near archaeological sites, yet we still lack a clear picture of how human management practices resulted in the domestication of Amazonian forests. The general view is that do...
Belongs to paper Species Distribution Modelling: Contrasting presence-only models with plot abundance data by Gomes et al.
Comparing the results of modelling the area of occupancy with MaxEnt and with inverse distance weighting (IDW).
Analysis results for the predicted area of occupancy as calculated by Maxent and IDW methods. The analyses were conducted for 170 of all 227 hyperdominant species that had MaxEnt’s predicted environmental suitability significantly differ...
Species distribution models (SDMs) are widely used in ecology and conservation. Presence-only SDMs such as MaxEnt frequently use natural history collections (NHCs) as occurrence data, given their huge numbers and accessibility. NHCs are often spatially biased which may generate inaccuracies in SDMs. Here, we test how the distribution of NHCs and Ma...
Species distribution models (SDMs) are widely used in ecology and conservation. Presence-only SDMs such as MaxEnt frequently use natural history collections (NHCs) as occurrence data, given their huge numbers and accessibility. NHCs are often spatially biased which may generate inaccuracies in SDMs. Here, we test how the distribution of NHCs and Ma...
Fourier Transformed Near-Infrared Spectroscopy (FT-NIR) has previously been shown to be effective in species discrimination of plant species, this prompted us to ask if higher taxonomic levels could also be discriminated, and if discrimination based on branch pieces would be equally efficient or better than based on leaves. We tested this with a sa...
Aim
To evaluate the relative importance of climatic versus soil data when predicting species distributions for Amazonian plants and to gain understanding of potential range shifts under climate change.
Location
Amazon rain forest.
Methods
We produced species distribution models ( SDM ) at 5‐km spatial resolution for 42 plant species (trees, palms...
McMichael et al. state that we overlooked the effects of post-Columbian human activities in shaping current floristic patterns in Amazonian forests. We formally show that post-Columbian human influences on Amazonian forests are indeed important, but they have played a smaller role when compared to the persistent effects of pre-Columbian human activ...
The linking of individual functional traits to ecosystem processes is the basis for making generalizations in ecology, but the measurement of individual values is laborious and time consuming, preventing large‐scale trait mapping. Also, in hyper‐diverse systems, errors occur because identification is difficult, and species level values ignore intra...
Topographic gradients in terra firme forests are associated with pronounced changes in soil texture, soil nutrients and distance to the water-table, thereby creating different hydric and nutritional conditions for plants and their associated herbivore community. The aim of this study was to investigate galling species and host plant richness and ga...
Deforestation of tropical forests has contributed to the formation of fragmented landscapes, surrounded mainly by a matrix of secondary forests, pastures and agriculture. In this study we evaluated the fragment-area effects on the density, diversity and composition of the soil seed bank. Fragments of primary forest of different sizes (1, 10 and 100...
