Fakhteh Ghanbarnejad

Max Planck Institute for the Physics of Complex Systems | MPIPKS

In recent studies, it has been shown that a cooperative interaction in a co-infection spread can lead to a discontinuous transition at a decreased threshold. Here, we investigate the effects of immunization with a rate proportional to the extent of the infection on phase transitions of a cooperative co-infection. We use the mean-field approximation...

Cooperation and competition between pathogens can alter the amount of individuals affected by a coinfection. Nonetheless, the evolution of the pathogens' behavior has been overlooked. Here, we consider a coevolutionary model where the simultaneous spreading is described by a two-pathogen susceptible-infected-recovered model in an either synergistic...

In recent studies, it has been shown that a cooperative interaction in a co-infection spread can lead to a discontinuous transition at a decreased threshold. Here, we investigate effects of immunization with a rate proportional to the extent of the infection on phase transitions of a cooperative co-infection. We use mean-field approximation to illu...

Cooperation and competition between pathogens can alter the amount of individuals affected by a co-infection. Nonetheless, the evolution of the pathogens' behavior has been overlooked. Here, we consider a co-evolutionary model where the simultaneous spreading is described by a two-pathogen susceptible-infected-recovered model in an either synergist...

Nonpharmaceutical measures such as social distancing can play an important role in controlling the spread of an epidemic. In this paper, we use a mathematical model combining human mobility and disease spreading. For the mobility dynamics, we design an agent-based model consisting of pedestrian dynamics with a novel type of force to resemble social...

We first propose a quantitative approach to detect high risk outbreaks of independent and coinfective SIR dynamics on three empirical networks: a school, a conference and a hospital contact network. This measurement is based on the k-means clustering method and identifies proper samples for calculating the mean outbreak size and the outbreak probab...

Non-pharmaceutical measures such as social distancing, can play an important role to control an epidemic in the absence of vaccinations. In this paper, we study the impact of social distancing on epidemics for which it is executable. We use a mathematical model combining human mobility and disease spreading. For the mobility dynamics, we design an...

We first propose a quantitative approach to detect high risk outbreaks of independent and coinfective SIR dynamics on three empirical networks: a school, a conference and a hospital contact network. This measurement is based on the k-means clustering method and identifies proper samples for calculating the mean outbreak size and the outbreak probab...

In ecological systems, heterogeneous interactions between pathogens take place simultaneously. This occurs, for instance, when two pathogens cooperate, while at the same time, multiple strains of these pathogens co-circulate and compete. Notable examples include the cooperation of human immunodeficiency virus with antibiotic-resistant and susceptib...

The simultaneous emergence of several abrupt disease outbreaks or the extinction of some serotypes of multistrain diseases are fingerprints of the interaction between pathogens spreading within the same population. Here, we propose a general and versatile benchmark to address the unfolding of both cooperative and competitive interacting diseases. W...

In ecological systems heterogeneous interactions between pathogens take place simultaneously. This occurs, for instance, when two pathogens cooperate, while at the same time multiple strains of these pathogens co-circulate and compete. Notable examples include the cooperation of HIV with antibiotic-resistant and susceptible strains of tuberculosis,...

In this paper, we introduce a general framework for coinfection as cooperative susceptible-infected-removed (SIR) dynamics. We first solve the SIR model analytically for two symmetric cooperative contagions [L. Chen et al., Europhys. Lett. 104, 50001 (2013)] and then generalize and solve the model exactly in the symmetric scenarios for three and mo...

The simultaneous emergence of several abrupt disease outbreaks or the extinction of some serotypes of multi-strain diseases are fingerprints of the interaction between pathogens spreading within the same population. Here, we propose a general and versatile benchmark to address the unfolding of both cooperative and competitive interacting diseases....

Interactions often require the proximity between particles. The movement of particles, thus, drives the change of the neighbors which are located in their proximity, leading to a sequence of interactions. In pathogenic contagion, infections occur through proximal interactions, but at the same time, the movement facilitates the co-location of differ...

In this paper, we introduce a general framework for co-infection as cooperative SIR dynamics. We first solve analytically CGCG model [1] and then the generalized model in symmetric scenarios. We calculate transition points, order parameter, i.e. total number of infected hosts. Also we show analytically there is a saddle-node bifurcation for two coo...

A model is developed in which two players compete to spread information in the large network. Players choose their initial seed nodes simultaneously and the information is diffused according to Independent Cascade model (ICM). The main aim of the player is to choose the seed nodes such that they will spread its information to as many nodes as possi...

Interactions often require the proximity between particles. The movement of particles, thus, drives the change of the neighbours which are located in their proximity, leading to a sequence of interactions. In pathogenic contagion, infections occur through proximal interactions, but at the same time the movement facilitates the co-location of differ...

In a competitive marketing, there are a large number of players which produce the same product. Each firm aims to diffuse its product information widely so that it's product will become popular among potential buyers. The more popular is a product of a firm, the higher is the revenue for the firm. A model is developed in which two players compete t...

We study the spreading of cooperative infections in an empirical temporal network of contacts between people, including health care workers and patients, in a hospital. The system exhibits a phase transition leading to one or several endemic branches, depending on the connectivity pattern and the temporal correlations. There are two endemic branche...

We investigate the effects of cooperativity between contagion processes that spread and persist in a host population. We propose and analyze a dynamical model in which individuals that are affected by one transmissible agent A exhibit a higher than baseline propensity of being affected by a second agent B and vice versa. The model is a natural exte...

We investigate the effects of cooperation between two interacting infectious diseases that spread and stabilize in a host population. We propose a model in which individuals that are infected with one disease are more likely to acquire the second disease, both diseases following the susceptible-infected-susceptible reaction scheme. We analyze coope...

We study the spreading of two mutually cooperative diseases on different network topologies, and with two microscopic realizations, both of which are stochastic versions of an SIR type model studied by us recently in mean field approximation. There it had been found that cooperativity can lead to first-order spreading/extinction transitions. Howeve...

The spreading of contagions can exhibit a percolation transition, which separates transitory prevalence from outbreaks that reach a finite fraction of the population. Such transitions are commonly believed to be continuous, but empirical studies have shown more violent spreading modes when the participating agents are not limited to one type. Strik...

It is well accepted that adoption of innovations are described by S-curves (slow start, accelerating period, and slow end). In this paper, we analyze how much information on the dynamics of innovation spreading can be obtained from a quantitative description of S-curves. We focus on the adoption of linguistic innovations for which detailed database...

Modeling epidemic dynamics plays an important role in studying how diseases spread, predicting their future course, and designing strategies to control them. In this letter, we introduce a model of SIR (susceptible-infected-removed) type which explicitly incorporates the effect of {\it cooperative coinfection}. More precisely, each individual can g...

Biological processes such as cell deviation, cell differentiation and so on are regulated dynamics. These dynamics are often described by continuous rate equations for continuously varying chemical concentrations. Binary discretization of state space and time leads to another class of models, Boolean dynamics, which are dealing with larger systems,...

Boolean networks serve as discrete models of regulation and signaling in biological cells. Identifying the key controllers of such processes is important for understanding the dynamical systems and planning further analysis. Here we quantify the dynamical impact of a node as the probability of damage spreading after switching the node's state. We f...

Regulatory dynamics in biology is often described by continuous rate equations for continuously varying chemical concentrations. Binary discretization of state space and time leads to Boolean dynamics. In the latter, the dynamics has been called unstable if flip perturbations lead to damage spreading. Here, we find that this stability classificatio...

In this paper, we investigate the statistical and scaling properties of the California earthquakes' inter-events over a period of the recent 40 years. To detect long-term correlations behavior, we apply detrended fluctuation analysis (DFA), which can systematically detect and overcome nonstationarities in the data set at all time scales. We calcula...