Fábris Kossoski

Fábris Kossoski
Université Toulouse III - Paul Sabatier | UPS Toulouse · Laboratoire de Chimie et Physique Quantiques - UMR 5626 - LCPQ

PhD
CNRS researcher. Developing and applying electronic structure, electron scattering and nonadiabatic dynamics methods

About

57
Publications
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762
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Introduction
I develop theoretical methods and computational software to model molecular systems and their interactions with free electrons and photons. I am interested in electronic structure, electron scattering and nonadiabatic dynamics methodologies. I apply these theoretical tools to tackle problems of chemical relevance. In particular, I simulate how free electrons can break molecules apart, a fundamental physical-chemical process playing major roles in many environments.

Publications

Publications (57)
Article
Full-text available
We introduce and benchmark a systematically improvable route for excited-state calculations, labeled state-specific configuration interaction (ΔCI), which is a particular realization of multiconfigurational self-consistent field and multireference configuration interaction. Starting with a reference built from optimized configuration state function...
Article
To enrich and enhance the diversity of the quest database of highly accurate excitation energies [Véril, M.; et al. Wiley Interdiscip. Rev.: Comput. Mol. Sci. 2021, 11, e1517], we report vertical transition energies in transition metal compounds. Eleven diatomic molecules with a singlet or doublet ground state containing a fourth-row transition met...
Article
Full-text available
We reexamine ΔCCSD, a state-specific coupled-cluster (CC) with single and double excitations (CCSD) approach that targets excited states through the utilization of non-Aufbau determinants. This methodology is particularly efficient when dealing with doubly excited states, a domain in which the standard equation-of-motion CCSD (EOM-CCSD) formalism f...
Article
In the realm of photochemistry, the significance of double excitations (also known as doubly excited states), where two electrons are concurrently elevated to higher energy levels, lies in their involvement in key electronic transitions essential in light-induced chemical reactions as well as their challenging nature from the computational theoreti...
Preprint
Full-text available
Electronic resonances are metastable states that can decay by electron loss. They are ubiquitous across various fields of science, such as chemistry, physics, and biology. However, current theoretical and computational models for resonances cannot yet rival the level of accuracy achieved by bound-state methodologies. Here, we generalize selected co...
Article
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Methyl-p-benzoquinone (MpBQ, CH3C6H3(═O)2) is a prototypical molecule in the study of quinones, which are compounds of relevance in biology and several redox reactions. Understanding the electron attachment properties of MpBQ and its ability to form anions is crucial in elucidating its role in these reactions. In this study, we investigate electron...
Article
Electronic resonances are metastable states that can decay by electron loss. They are ubiquitous across various fields of science, such as chemistry, physics, and biology. However, current theoretical and computational models for resonances cannot yet rival the level of accuracy achieved by bound-state methodologies. Here, we generalize selected co...
Article
Hierarchy configuration interaction (hCI) has recently been introduced as an alternative configuration interaction (CI) route combining excitation degree and seniority number and has been shown to efficiently recover both dynamic and static correlations for closed-shell molecular systems [ J. Phys. Chem. Lett. 2022, 13, 4342]. Here we generalize hC...
Article
We report experimental differential cross sections (DCSs) for electron impact excitation of bands I to V of benzene at incident energies of 10, 12.5, 15, and 20 eV. They are compared to calculations using the Schwinger multichannel method while accounting for up to 437 open channels. For intermediate scattering angles, the calculations reveal that...
Preprint
Full-text available
Hierarchy configuration interaction (hCI) has been recently introduced as an alternative configuration interaction (CI) route combining excitation degree and seniority number, which showed to efficiently recover both dynamic and static correlations for closed-shell molecular systems [\href{https://doi.org/10.1021/acs.jpclett.2c00730}{\textit{J.~Phy...
Article
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In this study, we present a complete set of electron scattering cross-sections from 1-Methyl-5-Nitroimidazole (1M5NI) molecules for impact energies ranging from 0.1 to 1000 eV. This information is relevant to evaluate the potential role of 1M5NI as a molecular radiosensitizers. The total electron scattering cross-sections (TCS) that we previously m...
Article
We present experimental and theoretical differential cross sections for elastic electron scattering from benzene. The present experimental results are obtained at incident electron energies ranging from 1 to 50 eV and for scattering angles from 10∘ to 130∘. The experimental measurements are compared to available results from 1 to 10 eV and to theor...
Article
Full-text available
We report ground- and excited-state dipole moments and oscillator strengths (computed in different "gauges" or representations) of full configuration interaction (FCI) quality using the selected configuration interaction method known as Configuration Interaction using a Perturbative Selection made Iteratively (CIPSI). Thanks to a set encompassing 3...
Preprint
Full-text available
We report ground- and excited-state dipole moments and oscillator strengths (computed in different ``gauges'' or representations) of full configuration interaction (FCI) quality using the selected configuration interaction method known as \textit{Configuration Interaction using a Perturbative Selection made Iteratively} (CIPSI). Thanks to a set enc...
Preprint
Full-text available
We introduce and benchmark a new systematically improvable route for excited-state calculations, state-specific configuration interaction ($\Delta$CI). Starting with a reference built from optimized configuration state functions, separate CI calculations are performed for each targeted state (hence state-specific orbitals and determinants). Account...
Article
Full-text available
Newton-X is an open-source computational platform to perform nonadiabatic molecular dynamics based on surface hopping and spectrum simulations using the nuclear ensemble approach. Both are among the most common methodologies in computational chemistry for photophysical and photochemical investigations. This paper describes the main features of thes...
Preprint
Full-text available
Newton-X is an open-source computational platform to perform nonadiabatic molecular dynamics based on surface hopping and spectrum simulations using the nuclear ensemble approach. Both are among the most common methodologies in computational chemistry for photophysical and photochemical investigations. This paper describes the main features of thes...
Article
Full-text available
Low-energy electrons (LEEs) can very efficiently induce bond breaking via dissociative electron attachment (DEA). While DEA is ubiquitous, the importance of other reactions initiated by LEEs remains much more elusive. Here, we looked into this question by measuring highly accurate total cross sections for electron scattering from 1-methyl-5-nitroim...
Article
Full-text available
We propose a novel partitioning of the Hilbert space, hierarchy configuration interaction (hCI), where the excitation degree (with respect to a given reference determinant) and the seniority number (i.e., the number of unpaired electrons) are combined in a single hierarchy parameter. The key appealing feature of hCI is that each hierarchy level acc...
Preprint
We propose a novel partitioning of the Hilbert space, hierarchy configuration interaction (hCI), where the excitation degree (with respect to a given reference determinant) and the seniority number (i.e., the number of unpaired electrons) are combined in a single hierarchy parameter. The key appealing feature of hCI is that each hierarchy level acc...
Article
Benzene is undoubtedly one of the most studied target molecules in electron scattering experiments and calculations. However, there is still a huge knowledge gap on the electronic excitation cross sections of this fundamental collision. Here, we report calculated differential and integral cross sections for elastic and electronic excitation, as wel...
Article
Full-text available
Following our recent work on the benzene molecule [P.-F. Loos, Y. Damour, and A. Scemama, J. Chem. Phys. 153, 176101 (2020)], motivated by the blind challenge of Eriksen et al. [J. Phys. Chem. Lett. 11, 8922 (2020)] on the same system, we report accurate full configuration interaction (FCI) frozen-core correlation energy estimates for 12 five- and...
Article
Full-text available
In single-reference coupled-cluster (CC) methods, one has to solve a set of non-linear polynomial equations in order to determine the so-called amplitudes that are then used to compute the energy and other properties. Although it is of common practice to converge to the (lowest-energy) ground-state solution, it is also possible, thanks to tailored...
Article
Recent measurements of spin-polarized electron collisions with halocamphor molecules have observed intriguing trends in their dissociative electron attachment (DEA) chiral asymmetries. While the differences between the DEA asymmetries of 3-bromocamphor (3BrC) and 3-iodocamphor (3IC) were consistent with the larger atomic number of iodine, the even...
Preprint
Full-text available
Following our recent work on the benzene molecule [\href{https://doi.org/10.1063/5.0027617}{J.~Chem.~Phys.~\textbf{153}, 176101 (2020)}], itself motivated by the blind challenge of Eriksen \textit{et al.} [\href{https://doi.org/10.1021/acs.jpclett.0c02621}{J.~Phys.~Chem.~Lett.~\textbf{11}, 8922 (2020)}] on the same system, we report accurate full c...
Article
Full-text available
The pair coupled cluster doubles (pCCD) method (where the excitation manifold is restricted to electron pairs) has a series of interesting features. Among others, it provides ground-state energies very close to what is obtained with doubly occupied configuration interaction (DOCI), but with a polynomial cost (compared with the exponential cost of t...
Preprint
Full-text available
In single-reference coupled-cluster (CC) methods, one has to solve a set of non-linear polynomial equations in order to determine the so-called amplitudes which are then used to compute the energy and other properties. Although it is of common practice to converge to the (lowest-energy) ground-state solution, it is also possible, thanks to tailored...
Article
Full-text available
We report absolute photoabsorption cross sections for gas-phase 2- and 5-bromopyrimidine in the 3.7–10.8 eV energy range, in a joint theoretical and experimental study. The measurements were carried out using high-resolution vacuum ultraviolet synchrotron radiation, with quantum chemical calculations performed through the nuclear ensemble approach...
Preprint
Full-text available
The pair coupled cluster doubles (pCCD) method (where the excitation manifold is restricted to electron pairs) has a series of interesting features. Among others, it provides ground-state energies very close to what is obtained with doubly-occupied configuration interaction (DOCI), but with polynomial cost (compared with the exponential cost of the...
Article
We report a comprehensive study on the electronic excited states of tetrafluoro-1,4-benzoquinone, through high-resolution vacuum ultraviolet photoabsorption spectroscopy and time-dependent density functional theory calculations performed within the nuclear ensemble approach. Absolute cross section values were experimentally determined in the 3.8–10...
Article
We present novel experimental results of negative ion formation of halothane (C2HBrClF3) upon electron transfer from hyperthermal neutral potassium atoms (K°) in the collision energy range of 8–1000 eV. The experiments were performed in a crossed molecular beam setup allowing a comprehensive analysis of the time-of-flight (TOF) mass negative ions f...
Article
Trifluoroiodomethane (CF3I) is one of the most appealing candidates for applications in plasma-based technologies in view of its many interesting advantages when compared to more standard gases such as trifluorobromomethane (CF3Br). Low-energy electrons are prone to decomposing these molecules into reactive species, and knowledge on the collision c...
Article
Full-text available
Despite the continuous development of theoretical methodologies for describing nonadiabatic dynamics of molecular systems, there is a lack of approaches for processes where the norm of the wave function is not conserved, i.e., when an imaginary potential accounts for some irreversible decaying mechanism. Current approaches rely on building potentia...
Preprint
p>Despite the continuous development of theoretical methodologies for describing nonadiabatic dynamics of molecular systems, there is a lack of approaches for processes where the norm of the wave function is not conserved, i.e., when an imaginary potential accounts for some irreversible decaying mechanism. Current approaches rely on building potent...
Article
We report computed differential cross sections (DCSs) for electron impact excitation of the lower-lying states of both trans and gauche tautomers of ethanol, as well as total cross sections for the 15 eV–50 eV energy range. The Schwinger multichannel (SMC) method with pseudopotentials has been employed, and in our most sophisticated calculation in...
Article
Full-text available
The Schwinger multichannel method is employed to study elastic and electronically inelastic collisions of low-energy electrons by the thiophene molecule. It is well known that the elastic integral cross section for electron-thiophene scattering presents three shape resonances, some of which located around the opening region of the first excited sta...
Article
The core part of the program system COLUMBUS allows highly efficient calculations using variational multireference (MR) methods in the framework of configuration interaction with single and double excitations (MR-CISD) and averaged quadratic coupled-cluster calculations (MR-AQCC), based on uncontracted sets of configurations and the graphical unita...
Article
The low-energy anion spectra of cyanamide and its rare tautomer carbodiimide were surveyed with elastic electron scattering calculations. Our assignments differ qualitatively and quantitatively from a previous theoretical report. We support that both tautomers present two π* and two σ*NH shape resonances, while cyanamide should also display a dipol...
Article
Full-text available
Synopsis We present a novel theoretical approach for describing dissociative electron attachment. It is is based on classically propagating the nuclei on the potential surface of the resonant anion, which is described by bound state methods, while electron autodetachment is taken into account with an ad-hoc model built from scattering calculation r...
Article
Full-text available
Synopsis We present a study on the electron transmission and dissociative electron attachment asymmetries in halocamphor species. Our results consist in their anion state spectra, applied in a model for the spin-polarized electron scattering problem under the influence of a low energy resonance.
Article
A novel theoretical framework for describing the dynamics of transient anions is presented. An ensemble of classical trajectories is propagated on-the-fly, where resonance energies are computed with bound state techniques, and resonance widths are modeled with a combination of bound state and scattering calculations. The methodology was benchmarked...
Article
We report the results of ab initio calculations for elastic scattering and also for excitation of individual electronic states of para-benzoquinone (pBQ) by the impact of low-energy electrons. The calculations for elastic scattering were performed with the Schwinger multichannel method implemented with pseudopotentials (SMCPP) in the static-exchang...
Article
We report absolute experimental integral cross sections (ICSs) for the electron impact excitation of 6 bands (Bands 0-V) of unresolved electronic-states in para-benzoquinone, for incident electron energies between 20 and 40 eV. Absolute vibrational-excitation ICSs, for 3 composite vibrational bands (Bands I-III), are also reported in that same ener...
Article
Full-text available
We show that the importance sampling technique can effectively augment the range of problems where the nuclear ensemble approach can be applied. A sampling probability distribution function initially determines the collection of initial conditions for which calculations are performed, as usual. Then, results for a distinct target distribution are c...
Article
Angle resolved electron energy loss spectra (EELS) for para-benzoquinone (C6H4O2) have been recorded for incident electron energies of 20, 30, and 40 eV. Measured differential cross sections (DCSs) for electronic band features, composed of a combination of energetically unresolved electronic states, are subsequently derived from those EELS. Where p...
Article
We report on theoretical elastic and experimental vibrational-excitation differential cross sections (DCSs) for electron scattering from para-benzoquinone (C6H4O2), in the intermediate energy range 15–50 eV. The calculations were conducted with two different theoretical methodologies, the Schwinger multichannel method with pseudopotentials (SMCPP)...
Article
We report on the low energy anion spectra of 5-cyanateuracil (5-OCNU) and 5-thiocyanateouracil (5-SCNU), which have been the suggested potential radiosensitizers for use in cancer therapy [L. Chomicz et al., J. Phys. Chem. Lett. 4, 2853–2857 (2013)]. Employing bound state and scattering calculations, we obtained, for both molecules, a dipole bound...
Article
The efficient decomposition of nitroimidazoles (NIs) by low energy electrons is believed to underlie their radiosensitizing properties. Recent dissociative electron attachment (DEA) measurements showed that methylation at the N1 site unexpectedly suppresses the electron-induced reactions in 4(5)-NI. We report theoretical results that provide a clea...
Article
We report a theoretical study on low-energy (<10 eV) elastic electron scattering from chlorophenol isomers, namely, para-chlorophenol (pCP), meta-chlorophenol (mCP), and ortho-chlorophenol (oCP). The calculations were performed with the Schwinger multichannel method with pseudopotentials, and analysis of the computed integral cross sections and vir...
Article
Full-text available
We report on a joint theoretical and experimental investigation into the electron-induced fragmentation of 2-chloroadenine, for electrons up to 12 eV. Elastic scattering calculations indicate an anion spectrum comprising a σCCl* and four π* shape resonances, where the latter are systematically stabilised when compared to the analogue states of aden...
Article
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We present two-dimensional potential energy surfaces for the negative ions states π1*, π2* and σCCI* of the potential radiosensetizer 5-chlorouracil. These were built along the C–Cl stretching mode (reactive coordinate) and an out-of-plane angular displacement of Cl atom (tuning coordinate), as obtained from scattering calculations performed with t...
Article
The valence anion states of the potential radiosensitisers 5-bromouracil and 5-iodouracil were investigated through elastic scattering calculations. These compounds have rich spectra of negative ion states that trigger off different mechanisms for dissociative electron attachment. For each molecule, we obtained a π* bound anion, two π* shape resona...
Article
Full-text available
We report elastic integral cross sections for low-energy electron scattering by gas-phase dimethyl sulfide and dimethyl disulfide, obtained with the Schwinger multichannel method with pseudopotentials. Our symmetry-resolved cross sections for dimethyl sulfide reveal that the single broad structure at $3.25\phantom{\rule{0.16em}{0ex}}\mathrm{eV}$ ob...
Article
Full-text available
The fragmentation of 2-thiouracil (TU) molecules induced by low energy (<12 eV) electrons is investigated experimentally and theoretically. It is observed that most of the damage is localised at the sulphur site and in particular visible via the production of the thiocyanate, SCN(-), anion. Similar to the canonical nucleobases the loss of the hydro...
Article
Full-text available
We report on the shape resonance spectra of uracil, 5-fluorouracil, and 5-chlorouracil, as obtained from fixed-nuclei elastic scattering calculations performed with the Schwinger multichannel method with pseudopotentials. Our results are in good agreement with the available electron transmission spectroscopy data, and support the existence of three...
Article
We report elastic integral and differential cross sections for electron scattering from the aza-derivatives of pyrrole, furan, and thiophene, namely, pyrazole, imidazole, isoxazole, oxazole, isothiazole, and thiazole. The calculations were performed within the Schwinger multichannel method with pseudopotentials, with inclusion of static, exchange,...
Article
Full-text available
We present elastic cross sections for low-energy electron collisions with the isomers of C2H2Cl2 molecule, namely 1,1-dichloroethylene, cis-1,2-dichloroethylene and trans-1,2-dichloroethylene. To compute the cross sections, we employed the Schwinger multichannel method with pseudopotentials in the static exchange and in the static-exchange plus pol...

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