Fábio Lopes Olivares

State University of Norte Fluminense · Laboratory of Cell and Tissue Biology – LBCT

Citation: de Oliveira, U.A.; Amaral Junior, A.T.d.; Kamphorst, S.H.; de Lima, V.J.; Olivares, F.L.; Khan, S.; de Souza Santos, M.; da Silva Figueiredo, J.; da Silva, S.P.; Viana, F.N.; et al. Abstract: Despite the development of adapted popcorn cultivars such as UENF WS01, strategies such as bacterial inoculation are being explored to enhance plant...

The plant seed-borne microbiome comprises microorganisms vertically inherited from the mother plant. This microbiome is often linked to early-life protection and seedling growth promotion. Herein, we compare the seed-borne bacteriomes of a commercial hybrid (Santa Helena) and a landrace maize variety (Sol da Manhã). The landrace variety displays a...

This study aimed to evaluate the effect of soluble humic substances and plant-growth-promoting bacteria on the vegetative growth of Mombaça grass. A greenhouse experiment was conducted to study the effects of foliar applications of humic substances (0, 12, 24, 48, and 96 mg C L−1) on the growth of Mombaça fifteen days after germination. After deter...

Protein hydrolysates (PH) and humic substances (HS) are biostimulants that promote crop growth. Despite the widening of knowledge and insights provided by research activities over the past thirty years, there are still uncertainties concerning the possible direct absorption by plants of organic nitrogen as amino acids (AA) delivered as PH and the r...

Background Traditional agriculture is on the front line of climate change, being most impacted by the increase in the intensity and frequency of extreme events, such as floods, drought and rising temperatures. Local ecological knowledge is a recognized keystone of successfully managed socioecological systems, but loss of soil fertility, water scarc...

The plant seed-borne microbiome comprises microorganisms vertically inherited from the mother plant. This microbiome is often linked to early-life protection and seedling growth promotion. Here, we compare the seed-borne bacteriomes of a commercial hybrid and a landrace maize variety. The landrace variety displays a more diverse seed-borne microbio...

Edaphic factors can modulate the effects of microbial inoculants on crop yield promotion. Given the potential complexity of microbial inoculant responses to diverse soil management practices, we hypothesize that sustainable management of soil and water irrigation may improve soil quality and enhance the effects of plant growth-promoting bacteria (P...

Background Huanglongbing (HLB) is a devastating citrus disease. Before callose deposition, the bacterial infection causes oxidative stress, starting cell damage. Humic substances are among the most efficient antioxidants found in nature. Furthermore, it is also previously reported that humic substances can induce a phenylpropanoid metabolism contri...

The effect of humic substances (HSs) in combination with or without plant-growth-promoting bacteria on soybean vegetative growth and root nodulation was examined in this study. Seeds were inoculated with Bradyrhizobium japonicum SEMIA 5079 in the presence of HSs from leonardite and Herbaspirillum seropedicae HRC54. Additional HSs and H. seropedicae...

As agricultural practices become more sustainable, adopting more sustainable practices will become even more relevant. Searching for alternatives to chemical compounds has been the focus of numerous studies, and bacteriocins are tools with intrinsic biotechnological potential for controlling plant diseases. We continued to explore the biotechnologi...

Intensive agriculture maintains high crop yields through chemical inputs, which are well known for their adverse effects on environmental quality and human health. Innovative technologies are required to reduce the risk generated by the extensive and harmful use of pesticides. The plant biostimulants made from humic substances isolated from recycla...

Nutrient replenishment is one of the significant factors limiting the full development of extensive pasturelands. As a result, bio-inputs have been increasingly used under field conditions to improve plant growth in low-fertility soils. This study aimed to evaluate their effects on the productivity, physiological responses to and nitrogen (N) accum...

Soil organic matter (SOM) has a critical role in regulating soil phosphorus (P) dynamics and producing phytoavailable P. However, soil P dynamics are often explained mainly by the effects of soil pH, clay contents, and elemental compositions, such as calcium, iron, and aluminum. Therefore, a better understanding of the mechanisms of how SOM influen...

Levoglucosan is an anhydrosugar from biomass that has important applications as a platform for obtaining many value-added derivatives with high demand in the chemical industry and bioproducts by fermentation, including biofuels, among others. Thus, the experimental strategy was to intensify the levoglucosan production in the condensable fraction (b...

Agricultural systems are highly affected by climatic factors such as temperature, rain, humidity, wind, and solar radiation, so the climate and its changes are major risk factors for agricultural activities. A small portion of the agricultural areas of Brazil is irrigated, while the vast majority directly depends on the natural variations of the ra...

Traditional agriculture represents the most-extensive food-producing segment in the world. However, these agroecosystems are widely and closely associated with rural poverty, reflecting the dualism between the subsistence and the commodity-producing sector in the peripheric countries. Therefore, socially adapted technologies may be a reliable and h...

Herbaspirillum seropedicae is an endophytic bacterium that can fix nitrogen and synthesize phytohormones, which can lead to a plant growth-promoting effect when used as a microbial inoculant. Studies focused on mechanisms of action are crucial for a better understanding of the bacteria-plant interaction and optimization of plant growth-promoting re...

The use of humic substances in agriculture as a biostimulant emerged as one of the promising methods to promote sustainable production. Different molecular, biochemical, and physiological processes are triggered, resulting in nutrient efficiency use and protection against abiotic stress. Understanding plant changes promoted by humic substances is e...

Background Innovative technologies are required in agricultural production to eliminate the environmental risk generated by the intensive use of fertilizers and pesticides. Soil organic matter is a keystone for the transition towards sustainable production. However, it is not an easy task to increase soil organic matter in highly weathered soils wi...

The oil palm seedling production system is one of the stages with the highest production cost due to the long nursery period and the high use of chemical fertilizers. In this context, the insertion of rhizobacteria appears as a technology that can reduce the average cost of seedling production. The objective was to study the economic efficiency of...

Background The reliance on chemical inputs to support high yields is the Achilles’ heel of modern crop production. The soil organic matter management is as old as agriculture itself. Recently, the use of soluble humic substances as plant growth promoters has been brought to attention due to their effects on nutrient uptake and water use efficiency....

Biostimulation is a relevant technology to support the ecological intensification of agriculture, especially when biotic or abiotic factors keep plants under conditions of permanent stress that impair crop productivity. Biostimulants promote molecular, biochemical, physiological, and morphological changes in the plant, leading to better adaptation...

Microbial products have been attracting attention worldwide as a sustainable technology for agriculture. Successful microbial inoculation involves the proper formulation and delivery methods to overpass the competition with the natural soil-plant microbial community. For many years, scientists linked the effects of bioinoculants on their mechanisms...

A plethora of bacteria–fungal interactions occur on the extended fungal hyphae network in soil. The mycosphere of saprophytic fungi can serve as a bacterial niche boosting their survival, dispersion, and activity. Such ecological concepts can be converted to bioproducts for sustainable agriculture. Accordingly, we tested the hypothesis that the wel...

The Stenotrophomonas maltophilia complex (Smc) is a cosmopolitan bacterial group that has been proposed an emergent multidrug-resistant pathogen. Taxonomic studies support the genomic heterogeneity of Smc, which comprises genogroups exhibiting a range of phenotypically distinct strains from different sources. Here, we report the genome sequencing a...

Peanut husks are agro-industrial waste and represent about 20 wt% of the peanut harvest. This waste product was subjected to fast pyrolysis in a pyroprobe reactor coupled with GC/MS at temperatures ranging from 350 to 600 °C to maximize levoglucosan production. Prior to pyrolysis, the biomass was washed with acetic acid (10 wt%) to remove the alkal...

Given their remarkable beneficial effects on plant growth, several Azospirillum isolates currently integrate the formulations of various commercial inoculants. Our research group isolated a new strain, Azospirillum sp. UENF-412522, from passion fruit rhizoplane. This isolate uses carbon sources that are partially distinct from closely-related Azosp...

The oil palm (Elaeis guineensis Jacq.) is one of the most economically important oilseeds due to the production of two types of vegetable oils: palm oil and palm kernel oil. Due to the commercial plantations expansion, its necessary to produce seedling of agronomic quality, with low cost and proper management, which express all the productive poten...

Background The bacterial-spot disease caused by different Xanthomonas species is one of the major tomato diseases that reduce crop production and quality. Pesticides indiscriminate usage has resulted in an increase in resistant bacterial strains as well as contamination of farmers, consumers and the environment. Plant growth-promoting bacteria and...

The Stenotrophomonas maltophilia complex (Smc) is a cosmopolitan bacterial group that has been proposed an emergent multidrug-resistant pathogen. Taxonomic studies support the genomic heterogeneity of Smc, which comprises genogroups exhibiting a range of phenotypically distinct strains from different sources. Here, we report the genome sequencing a...

Background Salinity is one of the major environmental threats to agriculture, limiting plant growth and reducing crop yield. The use of humic substances to alleviate salt stress in plants is well reported, but the mechanisms remain unclear. This work aimed to apply humic acids on seedlings to acclimate plants to tolerate further salt stress exposit...

The present study aimed to evaluate the influence of Gluconacetobacter diazotrophicus (PAL5), Herbaspirillum seropedicae (HRC54) and Herbaspirillum rubrisubalbicans (HCC103) on seedling vigor, plant-crop productivity and potential to control the sugarcane Ratoon Stunting Disease (RSD) caused by Leifsonia xyli subsp. xyli (Lxx). Micropropagated seed...

Given their remarkable beneficial effects on plant growth, several Azospirillum isolates currently integrate the formulations of various commercial inoculants. Our research group isolated a new strain, Azospirillum sp. UENF-412522, from passion fruit rhizoplane. This isolate uses carbon sources that are partially distinct from closely-related Azosp...

The use of plant growth‐promoting bacteria as agricultural inoculants of plants should be encouraged because of their prominent role in biological nitrogen fixation, the increase of nutrient uptake by roots, abiotic stress mitigation, and disease control. The complex mechanisms underlying the association between plant and beneficial bacteria have b...

Seed germination events modulate microbial community composition, which ultimately influences seed to seedling growth performance. Here we evaluate the germinated maize (variety SHS 5050) root bacterial community of disinfected seed (DS) and non-disinfected seed (NDS). Using a gnotobiotic system, sodium hypochlorite (1.25%, 30 min) treated seeds sh...

Seeds are reservoirs of beneficial and harmful microorganism that modulates plant growth and health. Here, we access seed to seedling bacteriome assembly modified by seed-disinfection and the underlined effect over maize germination performance and root-seedlings microbial colonization. Seed-disinfection was performed with sodium hypochlorite (1.25...

Plants are colonized by a multitude of micro-organisms, collectively called “microbiome,” and which play essential roles in the niches they inhabit. The potential of the microbiome, combined with the need to produce food more sustainably, makes its study promising. Despite the growing recognition of the vast functional ability of the native microbi...

Background Plants primed by humic acids showed physiological and molecular response against different abiotic stresses without the presence of stressor agents (salinity, drought, heavy metal toxicity). It is plausible that humic acids themselves can act as chemical priming substances in plants. We hypothesized that humic acids can trigger the weak...

Main conclusion: Higher vacuolar proton pump activity may increase plant energy and nutrient use efficiency and provide the nexus between plant inoculation with Herbaspirillum seropedicae and growth promotion. Global change and growing human population are exhausting arable land and resources, including water and fertilizers. We present inoculatio...

Serendipita indica (former Piriformospora indica) is a non-obligate endophytic fungus and generally a plant growth and defence promoter with high potential to be used in agriculture. However, S. indica may switch from biotrophy to saprotrophy losing its plant growth promoting traits. Our aim was to understand if the free-living stage growth conditi...

Running title: Benefits of plant substrate biofortification with mutualistic bacteria- fungi interaction. BACKGROUND: A plethora of bacteria-fungal interactions occurs on the extended fungal hyphae network in soil. The mycosphere of saprophytic fungi can serve as a bacterial niche boosting their survival, dispersion, and activity. Such ecological...

Seeds are reservoirs of beneficial and harmful microorganism that modulates plant growth and health. Here, we access seed to seedling bacteriome assembly modified by seed-disinfection and the underlined effect over maize germination performance and root-seedlings microbial colonization. Seed-disinfection was performed with sodium hypochlorite (1.25...

Background Global market of humic substances has been increasing steadily based on the perception of the multifunctional properties as plant biostimulant, microbial vehicle and plant protective agent against environmental stress. Some field assays and many experimental observations have shown that humic matter could relieve the abiotic stress effec...

Seed germination events modulate microbial community composition, which ultimately influences seed to seedling growth performance. Here we assess the seed-borne bacteria community in disinfected and non-disinfected maize seeds and seedlings. Using a gnotobiotic system, sodium hypochlorite (1.25%, 30 min) treated-seeds showed a reduction of bacteria...

The demand for biostimulants has been growing at an annual rate of 10 and 12.4% in Europe and Northern America, respectively. The beneficial effects of humic substances (HS) as biostimulants of plant growth have been well-known since the 1980s, and they can be supportive to a circular economy if they are extracted from different renewable resources...

Phosphorus (P) deficiency is a major constraint in highly weathered tropical soils. Although phosphorous rock reserves may last for several hundred years, there exists an urgent need to research efficient P management for sustainable agriculture. Plant hormones play an important role in regulating plant growth, development, and reproduction. Humic...

We examined physiological and growth promotion traits in water-deprived pineapple explants inoculated with two endophytic diazotrophic bacteria. The following questions were addressed: (i) Is the root inoculation efficient to increase bacteria population associated to pineapple explants? (ii) Are nutrient concentrations improved in pineapple explant...

A bacterial isolate was investigated for its application in growth promotion of the palm plants seedlings (Elaeis guineensis Jacq.) in the nursery. The isolate was identified as Bacillus amyloliquefaciens UFRAB01 by sequencing of the 16S rDNA gene. The hormone stimulus strain increased by 66% Indole-Acetic Acid (IAA), 44% Abscisic Acid (ABA), as we...

The Herbaspirillum genus comprises 13 species, including eight plant-associate representatives. Currently, only H. seropedicae, H. rubrisubalbicans, and H. frisingense have been considered N2-fixing endophytes. All the species were isolated mainly from roots, stem, and leaves from graminaceous plants using malic acid as C-source formulated in a sem...

Background The use of humic substances as plant biostimulants has been increasingly attracting farmers and stunning researchers. The ability of these substances to enhance root growth by changing root architecture is often linked to their hormonal activities, such as auxin effects and nitric oxide production. Humeomics accesses the molecular consti...

Humic substances have been widely used as plant growth promoters to improve the yield of agricultural crops. However, the mechanisms underlying this effect remain unclear. Root soluble protein profiles in plants 11 days after planting and cultivated with and without humic acids (HA, 50 mg CL−1), were analyzed using the label-free quantitative prote...

Background The negative consequences of industrial agriculture greatly affect human health and the environment. Debating our dietary requirements and challenging the means of food production are necessary. In the first years of transitioning to agroecological production, crop yields normally decrease. Humic acids and beneficial bacteria used as pla...

The molecular characteristics of different vermicomposts, produced with variable rates of cattle manure and cotton residues, and of related humic acids were determined by ¹³C-CPMAS NMR and Off-line pyrolysis THM-GC–MS. The analyses highlighted a composition of mature vermicomposts based on differential amounts of lignocellulosic fraction and alkyl...

The potential of Pseudomonas putida KT2440 to act as a plant-growth promoter or as a bioremediator of toxic compounds can be affected by desiccation. In the present work, the bacterial survival ratio (BSR) in response to air desiccation was evaluated for P. putida KT2440 in the presence of different protectors. The BSR in the presence of nonreducin...

Enterobacter bugandensis is a recently described species that has been largely associated with nosocomial infections. We report the genome of a non-clinical E. bugandensis strain, which was integrated with publicly available genomes to study the pangenome and general population structure of E. bugandensis. Core- and whole-genome multilocus sequence...

We describe the synthesis and a function of melanin in Duddingtonia flagrans, a nematode-trapping fungus. We tested various culture media treated with L-DOPA, glucose and tricyclazole on fungal growth and melanin distribution using infrared spectroscopy (IS), electron paramagnetic resonance (EPR) and transmission electron microscopy (TEM). In vitro...

The molecular characteristics of different vermicomposts, produced with variable rates of cattle manure and cotton residues, and of related humic acids were determined by 13 C-CPMAS NMR and Off-line pyrolysis THM-GC-MS. The analyses highlighted a composition of mature vermicomposts based on differential amounts of lignocellulosic fraction and alkyl...

Background The use of plant-based biostimulants to increase crop yield and enhance protection has grown in popularity. We previously manufactured an inoculant combining humic acids with plant growth-promoting bacteria and observed a significant effect on crop yields. However, electrophysiology studies elucidating the mechanisms responsible for enha...

Enterobacter bugandensis is a recently described species that has been largely associated with nosocomial infections. Here, we report the genome of a non-clinical E. bugandensis strain. We used this and other several publicly available E. bugandensis genomes to obtain the species pangenome, investigate the conservation of important genes, and eluci...

Although production of organic acids (OAs) is usually mentioned as the main mechanism of phosphate solubilization, the relationship between carbon sources (C-sources) and OAs produced during phosphate-solubilization by microorganisms is still poorly understood. We evaluated the influence of different C-sources on FePO4·2H2O and Ca3(PO4)2 solubiliza...

The environmental consequences of industrial agriculture have increasingly called attention to new biotechnologies. The use of biostimulants based on humic substances has grown by about 10% per year allowing for nutrient economy due to their well-known effect on ion uptake. However, significant plant responses to humic acids have been observed unde...