Emmanuel F.A. Toussaint

• PhD
• Research Officer at Natural History Museum of Geneva

Early studies on Melanesian mountain systems provided insights for fundamental evolutionary and ecological concepts. These island-like systems are thought to provide opportunities in the form of newly formed, competition-free niches. Here we show that a hyperdiverse radiation of freshwater arthropods originated in the emerging central New Guinea or...

Butterflies are a diverse and charismatic insect group that are thought to have evolved with plants and dispersed throughout the world in response to key geological events. However, these hypotheses have not been extensively tested because a comprehensive phylogenetic framework and datasets for butterfly larval hosts and global distributions are la...

Beetles are arguably the most diverse group of animals on Earth with over 400 000 described species. Yet the timing of main diversification events among these insects remains debated. The use of phylogenomic data generated using next‐generation sequencing recently resolved most recalcitrant phylogenetic relationships across Coleoptera. However, lim...

Advances in phylogenomics contribute towards resolving long-standing evolutionary questions. Notwithstanding, genetic diversity contained within more than a billion biological specimens deposited in natural history museums remains recalcitrant to analysis owing to challenges posed by its intrinsically degraded nature. Yet that tantalizing resource...

Butterflies and moths (Lepidoptera) are one of the major super-radiations of insects, comprising nearly 160,000 described extant species. As herbivores, pollinators, and prey, Lepidoptera play a fundamental role in almost every terrestrial ecosystem. Lepidoptera are also indicators of environmental change and serve as models for research on mimicry...

The rapid advancement of genomic technologies has enabled the production of highly contiguous reference genomes for non-model organisms. However, these methods often require exceptionally fresh material containing unfragmented high molecular weight nucleic acids. Researchers who preserve field-collected specimens in ethanol at ambient temperatures,...

The giant ground beetle genus Calosoma (Coleoptera, Carabidae) comprises ca. 120 species distributed worldwide. About half of the species in this genus are flightless due to a process of wing reduction likely resulting from the colonization of remote habitats such as oceanic islands, highlands and deserts. This clade is emerging as a new model to s...

The superfamily Tenebrionoidea is one of the most challenging clades in the beetle tree-of-life owing to its vast species richness and complex taxonomic history. Within this group, the family Melandryidae has long been overlooked and its systematics remains poorly known. Using available sequence data, we infer the most comprehensive phylogeny of Me...

The development of museomics represents a major paradigm shift in the use of natural history collection specimens for systematics and evolutionary biology. New approaches in this field allow the sequencing of hundreds to thousands of loci from across the genome using historical DNA. HyRAD-X, a recently introduced capture method using bench-top desi...

South Pacific archipelagos are central in the biogeographic debate on the relative importance of vicariance and dispersal in shaping the distribution of species. However, each taxonomic group was subject to different processes and histories, and here, we reveal the historical biogeography of the diverse Eumolpinae leaf beetles, widely distributed i...

Cet ouvrage n’est pas un guide d’identification, mais une introduction aux Coléoptères peuplant la région du bassin genevois. Les espèces présentées ont été sélectionnées pour leur intérêt patrimonial, pour la diversité de leurs formes et de leurs mœurs ou encore de celles des milieux où elles vivent. On y trouve ainsi des espèces dites « communes...

The geologically‐complex Indo–Australian–Melanesian archipelago (IAMA) hosts extraordinarily high levels of species richness and endemism and has long served as a natural laboratory for studying biogeography and evolution. Nonetheless, its geological history and the provenance and evolution of its biodiversity remain poorly understood. Here, we pro...

The monophyletic status of the genus Oreina as well as its phylogenetic relation to the closely related genera Chrysolina , Crosita and Cyrtonus has been debated for several decades. To assess the status of the genus and understand its evolutionary history, we performed a museomics study on 148 museum specimens belonging to 25 of the 28 described O...

Australia was predominantly tropical for most of the Early Cenozoic, then transitioned to a cooler and drier climate in the Oligocene. In response to this increasing aridity, some lineages either adapted to xeric ecosystems, contracted to increasingly fragmented mesic refugia, or went extinct. However, the lack of macroevolutionary studies at a con...

Mezcals are distilled Mexican alcoholic beverages consumed by many people across the globe. One of the most popular mezcals is tequila, but there are other forms of mezcal whose production has been part of Mexican culture since the 17th century. It was not until the 1940–50s when the mezcal worm, also known as the “tequila worm”, was placed inside...

The swallowtail genus Papilio (Lepidoptera: Papilionidae) is species rich, distributed worldwide, and has broad morphological habits and ecological niches. Because of its elevated species richness, it has been historically difficult to reconstruct a densely sampled phylogeny for this clade. Here we provide a taxonomic working list for the genus, re...

A key challenge of natural history museums across the globe is to make collections accessible to researchers and the public alike. Through advances in digitization, databasing, online data curation and long-term storage, it is now possible to give access to the type material housed in museums, which represent the most precious specimens in collecti...

Minute moss beetles (Hydraenidae) are one of the most speciose and widespread families of aquatic Coleoptera, with an estimated 4000 extant species, found in the majority of aquatic habitats from coastal rock pools to mountain streams and from the Arctic Circle to the Antarctic islands. Molecular phylogenetic works have improved our understanding o...

Trapezitinae skippers are restricted to Australia and New Guinea. Despite decades of taxonomic work, their systematics and phylogeny remain little understood. To resolve the composition of genera and determine their evolutionary relationships, we inferred a comprehensive multilocus molecular phylogeny of Trapezitinae. Our results recover a monophyl...

Butterflies are a diverse and charismatic insect group that are thought to have diversified via coevolution with plants and in response to dispersals following key geological events. These hypotheses have been poorly tested at the macroevolutionary scale because a comprehensive phylogenetic framework and datasets on global distributions and larval...

Trapezitinae skippers are restricted to Australia and New Guinea. Despite decades of taxonomic work, their systematics and phylogeny remain little understood. To resolve the composition of genera and determine their evolutionary relationships, we inferred a comprehensive multilocus molecular phylogeny of Trapezitinae. Our results recover a monophyl...

Background The New Guinean archipelago has been shaped by millions of years of plate tectonic activity combined with long-term fluctuations in climate and sea level. These processes combined with New Guinea’s location at the tectonic junction between the Australian and Pacific plates are inherently linked to the evolution of its rich endemic biota....

The water scavenger beetle subfamily Acidocerinae is a cosmopolitan, ecologically diverse lineage with more than 500 described species whose morphology and classification are poorly understood. We present the first phylogenetic analyses of the subfamily inferred from five loci (18S, 28S, H3, CAD, COI). We used secondary calibrations to estimate div...

Skippers are a species rich and widespread group of butterflies with evolutionary patterns and processes largely unstudied despite some recent efforts. Among Hesperiidae, the subfamily Heteropterinae is a moderately diverse clade comprising ca. 200 species distributed from North to South America and from Africa to the Palearctic region. While some...

The Old-World Tropics encompass many unique biomes and associated biotas shaped by drastic climate and geological changes throughout the Cenozoic. Disjunct distributions of clades between the Afrotropics and the Oriental regions are testament to these changes. Awl and policeman skippers (Hesperiidae: Coeliadinae) are disjunctly distributed with som...

Diversification rates and evolutionary trajectories are known to be influenced by phenotypic traits and the geographic history of the landscapes that organisms inhabit. One of the most conspicuous traits in butterflies is their wing color pattern, which has been shown to be important in speciation. The evolution of many taxa in the Neotropics has a...

Understanding the evolutionary mechanisms governing the uneven distribution of species richness across the tree of life is a great challenge in biology. Scientists have long argued that sexual conflict is a key driver of speciation. This hypothesis, however, has been highly debated in light of empirical evidence. Recent advances in the study of mac...

The New World scarab beetle tribe Phanaeini contains coprophagous, necrophagous, mycetophagous and suspected myrmecophilous species. We analyse the largest tribal molecular dataset assembled, incorporating, for the first time, the enigmatic monobasic genus Megatharsis, the thalassinus group of the subgenus Coprophanaeus (Metallophanaeus), and the s...

Wallace's Line, located in the heart of the Indo‐Australian archipelago, has historically been hypothesized to strongly inhibit dispersal. Taxa crossing this barrier are confronted with different biota of Asian or Australian origin, respectively, but the extent to which these conditions have affected the evolution of the colonizing lineages remains...

Archdukes, barons, counts, dukes and marquises are forest-dwelling butterflies found in mainland Asia and most islands of the Indo-Australian archipelago west of Wallace’s Line, with only a few species occurring as far east as the Bismarck Archipelago. This pattern is unusual among butterfly groups of the region, which often present more widespread...

Phylogenomics is progressing rapidly, allowing large strides forward into our understanding of the tree of life. In this study, we generated transcriptomes from ethanol-preserved specimens of 13 tiger beetle species (Coleoptera: Cicindelinae) and one Scaritinae outgroup. From these 14 transcriptomes and seven publicly available transcriptomes, we r...

The first dated phylogeny of the weevil subfamily Cryptorhynchinae is presented within a framework of Curculionoidea. The inferred pattern and timing of weevil family relationships are generally congruent with previous studies, but our data are the first to suggest a highly supported sister‐group relationship between Attelabidae and Belidae. Our bi...

The visual systems and diel activity patterns of butterflies and moths have been studied for decades, yet understanding the underlying mechanisms that are associated with the evolution of these remains a major challenge. The order Lepidoptera is principally composed of nocturnal lineages with extreme morphological and behavioural adaptations to thi...

The genus Cymbiodyta Bedel, 1881 (Coleoptera: Hydrophilidae: Enochrinae) comprises 31 species distributed in both the Old and New World portions of the Holarctic realm. Although the species and taxonomy are relatively well known, the phylogenetic relationships among Cymbiodyta and the evolutionary history of the genus remain unexplored. To understa...

The origin of taxa presenting a disjunct distribution between Africa and Asia has puzzled biogeographers for more than a century. This biogeographic pattern has been hypothesized to be the result of transoceanic long‐distance dispersal, Oligocene dispersal through forested corridors, Miocene dispersal through the Arabian Peninsula or passive disper...

Our understanding of the origin and evolution of the astonishing Neotropical biodiversity remains somewhat limited. In particular, decoupling the respective impacts of biotic and abiotic factors on the macroevolution of clades is paramount to understand biodiversity assemblage in this region. We present the first comprehensive molecular phylogeny f...

The Neotropical tribe Dorynotini is characterized by a conspicuous tubercle or spine adorning the elytra, which, along with a few other characters, has been used to differentiate its recognized five genera and two subgenera. However, relationships among these taxa and the evolutionary origin of the pronounced tubercle remain speculative. Here we pr...

The convergent evolution of analogous features is an evolutionary process occurring independently across the tree of life. From the evolution of echolocation, prehensile tail, viviparity or winged flight, environmental factors often drive this astonishing phenomenon. However, convergent evolution is not always conspicuous or easily identified. Gian...

Disjunct geographical ranges are striking features, often difficult to comprehend without an evolutionary framework. The butterfly genus Charaxes Ochsenheimer, 1816 presents such a fragmented distribution, being distributed from the Mediterranean region, throughout Africa and into the Indo-Australian archipelago, albeit being absent from the northe...

Background: Butterflies (Papilionoidea) are perhaps the most charismatic insect lineage, yet phylogenetic relationships among them remain incompletely studied and controversial. This is especially true for skippers (Hesperiidae), one of the most species-rich and poorly studied butterfly families. Methods: To infer a robust phylogenomic hypothesi...

The Neotropical tribe Dorynotini is characterized by a conspicuous tubercle or spine adorning the elytra, which, along with a few other characters, has been used to differentiate its recognized five genera and two subgenera. However, relationships among these taxa and the evolutionary origin of the pronounced tubercle remain speculative. Here we pr...

The rise of Neogene C 4 grasslands is one of the most drastic changes recently experienced by the biosphere. A central-and widely debated-hypothesis posits that Neogene grasslands acted as a major adaptive zone for herbivore lineages. We test this hypothesis with a novel model system, the Sesamiina stemborer moths and their associated host-grasses....

The origins and evolution of Hawaiian biodiversity are a matter of controversy, and the mechanisms of lineage diversification for many organisms on this remote archipelago remain unclear. Here we focus on the poorly known endemic leaf-mining moth genus Philodoria (Lepidoptera, Gracillariidae), whose species feed on a diversity of Hawaiian plant lin...

Tiger beetles are a remarkable group that captivates amateur entomologists, taxonomists and evolutionary biologists alike. This diverse clade of beetles comprises about 2300 currently described species found across the globe. Despite the charisma and scientific interest of this lineage, remarkably few studies have examined its phylogenetic relation...

Recent theoretical advances have hypothesized a central role of habitat persistence on population genetic structure and resulting biodiversity patterns of freshwater organisms. Here, we address the hypothesis that lotic species, or lineages adapted to comparably geologically stable running water habitats (streams and their marginal habitats), have...

The Neotropical moth-like butterflies (Hedylidae) are perhaps the most unusual butterfly family. In addition to being species-poor, this family is predominantly nocturnal and has anti-bat ultrasound hearing organs. Evolutionary relationships among the 36 described species are largely unexplored. A 13-gene anchored hybrid enrichment probe set ('BUTT...

Beetles have colonized freshwater habitats multiple times throughout their evolutionary history. Some of these aquatic lineages are associated exclusively with waterfall-like habitats, often with modified morphologies to cope with their unusual way of life. The historical biogeography of such cascade beetle lineages has been shown to strongly refle...

Butterflies (Papilionoidea), with over 18,000 described species [1], have captivated naturalists and scientists for centuries. They play a central role in the study of speciation, community ecology, biogeography, climate change, and plant-insect interactions and include many model organisms and pest species [2, 3]. However, a robust higher-level ph...

The subfamily Carabinae is a diverse clade distributed across all biogeographical regions except Antarctica. In a seminal work, René Jeannel hypothesized a Gondwanan origin for this group, but this has hitherto remained untested with molecular data. We test this hypothesis by using a supermatrix approach. We also infer the most comprehensive phylog...

The subfamily Carabinae is a diverse clade distributed across all biogeographical regions except Antarctica. In a seminal work, René Jeannel hypothesized a Gondwanan origin for this group, but this has hitherto remained untested with molecular data. We test this hypothesis by using a supermatrix approach. We also infer the most comprehensive phylog...

The water scavenger beetle Hydrochara rickseckeri (Horn) is a large but rarely collected aquatic beetle known from central California. Infrequent collection and a narrow geographic distribution have led the species to be considered of conservation concern by both federal and state agencies. We recently encountered this species in a vernal pond near...

The water scavenger beetle tribe Hydrobiusini contains 47 species in eight genera distributed worldwide. Most species of the tribe are aquatic, although several species are known to occur in waterfalls or tree mosses. Some members of the tribe are known to communicate via underwater stridulation. While recent morphological and molecular-based phylo...

The origin of the astonishing New Caledonian biota continues to fuel a heated debate among advocates of a Gondwanan relict scenario and defenders of late oceanic dispersal. Here, we study the origin of New Caledonian Trigonopterus flightless weevils using a multimarker molecular phylogeny. We infer two independent clades of species found in the arc...

The origin of biodiversity in the Neotropics predominantly stems either from Gondwana breakup or late dispersal events from the Nearctic region. Here, we investigate the biogeography of a diving beetle clade whose distribution encompasses parts of the Oriental region, the Indo-Australian archipelago (IAA) and the Neotropics. We reconstructed a date...

Aim We tested the hypothesis that ancient vicariance in giant water scavenger beetles shaped their current distribution. Location Worldwide except Antarctica. Methods We inferred a molecular phylogenetic hypothesis for the tribe Hydrophilini using probabilistic methods based on broad geographical and taxonomic sampling. We used fossil‐based molec...

Aim We studied the gecko genus Ebenavia to reconstruct its colonization history, test for anthropogenic versus natural dispersal out of Madagascar, and correlate divergence date estimates of our phylogeny with geological age estimates of islands in the region. Location Madagascar and surrounding islands of the Western Indian Ocean (Comoros, Mayott...

Neotropical diving beetles of the genus Platynectes are distributed across Central America, the Andes and different Precambrian shields in the Amazon Basin. Species from the northern Guiana Shield form a monophyletic clade, yet the phylogenetic relationships of the eastern Atlantic Shield species remain unknown. Here, we augmented an existing molec...

The first molecular phylogenetic hypothesis for the aquatic beetle family Noteridae is inferred using DNA sequence data from five gene fragments (mitochondrial and nuclear): COI, H3, 16S, 18S, and 28S. Our analysis is the most comprehensive phylogenetic reconstruction of Noteridae to date, and includes 53 species representing all subfamilies, tribe...

The superfamily Dytiscoidea contains six families with an aquatic lifestyle, with most of its extant diversity in two families: the burrowing water beetles (Noteridae) and the diving beetles (Dytiscidae). The other families have few species (up to six) and generally highly disjunct extant distributions. Aspidytidae currently contains one genus with...

The genus Polyura comprises 32 species across the Oriental Region and the Indo-Australian archipelago. Its taxonomy and systematics have recently been studied using a comprehensive molecular phylogeny. Yet, certain elements of its fauna were not available for in depth study. Here, we provide a denser taxon sampling and reconstruct a new phylogeneti...

The underlying mechanisms responsible for the general increase in species richness from temperate regions to the tropics remain equivocal. Many hypotheses have been proposed to explain this astonishing pattern but additional empirical studies are needed to shed light on the drivers at work. Here we reconstruct the evolutionary history of the cosmop...

The evolution of a secondary terrestrial lifestyle in diving beetles (Coleoptera: Dytiscidae) has never been analysed in a phylogenetic framework before. Here we study Terradessus caecus Watts, a terrestrial species of the subfamily Hydroporinae endemic to Australia. We infer its phylogenetic placement using Bayesian inference and maximum-likelihoo...

Butterflies of the genus Polyura form a widespread tropical group distributed from Pakistan to Fiji. The rare endemic Polyura epigenes Godman & Salvin, 1888 from the Solomon Islands archipelago represents a case of marked island polymorphism. We sequenced museum specimens of this species across its geographic range to study the phylogeography and g...

Aim The respective contribution of vicariance and/or dispersal events to the evolution of clades dwelling in the archipelagic parts of the Oriental and Australian regions remains equivocal. Using a complete, species‐level phylogeny of Polyura butterflies that are widespread in the oriental Palaeotropics, we aim to test predictions related to vicari...

In recent years, several new genera have been erected in the subfamily Copelatinae, including the description of endemic taxa from Madagascar, New Guinea, South Africa, and Venezuela. Here we build upon a recent molecular phylogeny of this subfamily to investigate the phylogenetic placement of Rugosus García, 2001, a genus comprising two species fr...

India and Madagascar drifted apart more than 80 Mya, yet few taxonomic groups currently found in these regions bear any signature of this split. When drifting in isolation, extensive volcanic activity covered almost half of India in lava flows, likely triggering widespread extinction on the island. Consequently, most of India's rich extant flora an...

The Sunda Arc forms an almost continuous chain of islands and thus a potential dispersal corridor between mainland Southeast Asia and Melanesia. However, the Sunda Islands have rather different geological histories, which might have had an important impact on actual dispersal routes and community assembly. Here, we reveal the biogeographical histor...

The fate of newly settled dispersers on freshly colonized oceanic islands is a central theme of island biogeography. The emergence of increasingly sophisticated methods of macroevolutionary pattern inference paves the way for a deeper understanding of the mechanisms governing these diversification patterns on lineages following their colonization o...

Divergence time estimates derived from phylogenies are crucial to infer historical biogeography and diversification dynamics. Yet, the impact of fossil record incompleteness on macroevolutionary reconstructions remains equivocal. Here, we investigate to what extent gaps in the fossil record can impinge downstream evolutionary inferences in the beet...

The highly modified morphology and ecological features of cave-dwelling organisms are a strong obstacle to dispersion. Hence, they represent ideal models for the study of historical biogeography at both large and fine timescales. Here, we study the phylogeography of Aphaenops cerberus, an endemic hypogean ground beetle with a fragmented distributio...

The Indo-Australian region was formed by the collision of the Australian and Asian plates, and its fauna largely reflects this dual origin. Lydekker's and Wallace's Lines represent biogeographic transition boundaries between biotas although their permeability through geological times was rarely assessed. Here, we explore the evolutionary history of...

One hundred and fifty years after Alfred Wallace studied the geographical variation and species diversity of butterflies in the Indomalayan-Australasian Archipelago, the processes responsible for their biogeographical pattern remain equivocal. We analysed the macroevolutionary mechanisms accounting for the temporal and geographical diversification...

Species in the stem borer noctuid subtribe Sesamiina are notoriously difficult to distinguish because most related species have homogeneous wing patterns and almost indistinguishable genitalia. The latter is potentially prob- lematic because this group includes several important pest species that are usually baregly distinguishable from non-pest sp...

The charismatic tropical Polyura Nawab butterflies are distributed across twelve biodiversity hotspots in the Indomalayan / Australasian archipelago. In this study, we tested an array of species delimitation methods and compared the results to existing morphology-based taxonomy. We sequenced two mitochondrial and two nuclear gene fragments to recon...

Capelatus prykei gen. et sp.n., a distinctive new lineage of copelatine diving beetle, is described from the greater Cape Town area of the Western Cape Province, South Africa, on the basis of both morphological and molecular data. The genus-level phylogeny of Copelatinae is reconstructed using a combination of nuclear and mitochondrial DNA regions,...

Ten morphologically similar species of Acrapex from eastern and south-eastern Africa belonging to the A. stygiata and A. albivena groups are reviewed. Six species are described as new: A. brunneella, A. mitiwa, A. mpika, A. salmona, A. sporobola and A. yakoba. The Poaceae host plants of eight species are recorded; four species, A. mitiwa. A. subalb...