Dirk Redecker

University of Burgundy | UB · Unité Mixte de Recherche Agroécologie

Research on arbuscular mycorrhizal fungi (AMF) in ultramafic soils has principally focused on ecological restoration whereas little attention has been given to agriculture. The present study aims at understanding if mixtures of different AMF species from a New Caledonian ultramafic soil induced a better plant fitness and lower contents of potential...

The authors of the above-mentioned published article inadvertently omitted Dirk Redecker, Dioumacor Fall and Diaminatou Sanogo from the list of authors. The names and their affiliations presented in this paper.

Inoculation of arbuscular mycorrhizal fungi (AMF) as plant growth promoters has mostly been conducted using single-species inoculum. In this study, we investigated whether co-inoculation of different native AMF species induced an improvement of plant growth in an ultramafic soil. We analyzed the effects of six species of AMF from a New Caledonian u...

In 1977, the fine root endophyte, originally named Rhizophagus tenuis, was transferred into the genus Glomus as G. tenue, thus positioning the species with all other known arbuscular mycorrhizal fungi (Glomeromycota, Glomeromycotina). Recent molecular evidence, however, places it in a different subphylum, Mucoromycotina in the Mucoromycota. No suit...

Four new species of arbuscular mycorrhizal (AM) fungi (Glomeromycota) were isolated from the rhizosphere of endemic metallophytic plants in ultramafic soils in New Caledonia (South Pacific) and propagated on Sorghum vulgare. Acaulospora saccata and A. fragilissima are placed in the Acaulosporaceae, Scutellospora ovalis in the Gigasporaceae, and Rhi...

A workshop at the recent International Conference on Mycorrhiza was focused on species recognition in Glomeromycotina and parts of their basic biology that define species. The workshop was motivated by the paradigm-shifting evidence derived from genomic data for sex and for the lack of heterokaryosis, and by published exchanges in Science that were...

Arbuscular mycorrhizal fungi (AMF, Glomeromycota) are mutualistic symbionts associated with majority of land plants. These fungi play an important role in plant growth, but their taxonomic identification remains a challenge for academic research, culture collections and inoculum producers who need to certify their products. Identification of these...

Arbuscular mycorrhizal fungal (AMF) communities have been demonstrated to respond to a variety of biotic and abiotic factors, including various aspects of land management. Numerous studies have specifically addressed the impact of land use on AMF communities, but usually have been confined to one or a few sites. In this study, soil AMF assemblages...

(2491) Proposal to conserve the name Rhizophagus with a conserved type (Fungi: Glomeromycota: Glomeraceae)

Soil organisms have an important role in aboveground community dynamics and ecosystem functioning in terrestrial ecosystems. However, most studies have considered soil biota as a black box or focussed on specific groups, whereas little is known about entire soil networks. Here we show that during the course of nature restoration on abandoned arable...

Supplementary Figures, Supplementary Tables, Supplementary Methods, and Supplementary References

Utilizing a European transect of 54 soil samples, comprising of grasslands, arable and forest sites, we analyzed community composition of Arbuscular Mycorrhizal Fungi (AMF, Glomeromycota) using pyrosequencing of the Internal Transcribed Spacer region. We found a significant influence of environmental factors (soil pH and organic carbon or land use)...

Ziziphus mauritiana Lam., commonly known as jujube, is an important multipurpose fruit tree (e.g. fruits, fodder, medicine) for local inhabitants in the Sahel. Indian cultivars were introduced in its zone because of their precocity in fruiting and the larger size compared to the local ones. Furthermore, the orchards in its zone were found to be def...

p style="text-align: justify;"> Aim : To improve knowledge of arbuscular fungal communities for a sustainable management in vineyards. Methods and results : In 16 plots across Burgundy under contrasted soil properties and agricultural practices, we assessed arbuscular mycorrhizal fungal (AMF) diversity in vine roots, using pyrosequencing of ribosom...

Soil organisms are considered drivers of soil ecosystem services (primary productivity, nutrient cycling, carbon cycling, water regulation) associated with sustainable agricultural production. Soil biodiversity was highlighted in the soil thematic strategy as a key component of soil quality. The lack of quantitative standardised data at a large sca...

Viticulture is a major worldwide economic sector with a vine area of 7.52 million ha, wine production of 288 Mhl, and wine exports of 26 billion euros. Nevertheless, viticulture has to adapt to new challenges of pest management, such as pesticide reduction, and climate change, such as increasing droughts. Viticulture adaptation can benefit from arb...

Arbuscular mycorrhiza (AM), ectomycorrhiza (ECM) and nitrogen (N) fixation through rhizobia symbioses (RS) play a critical role for plant nutrient use efficiency in natural ecosystems, usually characterized by nutrient limitation, especially regarding nitrogen and phosphate. Substantial evidence has accumulated about how the rational use of microsy...

Short-term effects of soil physical disturbance by ploughing and nitrogen and phosphate fertilisation on arbuscular mycorrhizal fungal (AMF) communities and on intraspecific populations of Rhizophagus irregularis in a buffer strip surrounded by arable fields were studied. Pre-grown Plantago lanceolata plantlets were transplanted into fertilised and...

Due to the potential of arbuscular mycorrhizal fungi (AMF, Glomeromycota) to improve plant growth and soil quality, the influence of agricultural practice on their diversity continues to be an important research question. Up to now studies of community diversity in AMF have exclusively been based on nuclear ribosomal gene regions, which in AMF show...

The monophyletic phylum Glomeromycota was erected in 2001. All members of the Glomeromycota form arbuscular mycorrhizae (AM) or, in one case, a symbiosis with cyanobacteria. The fungi are dependent on symbiotically derived carbohydrates delivered by their photoautotrophic symbiotic partners and represent a significant carbon sink in terrestrial eco...

DNA phylogenetic comparisons have shown that morphology-based species recognition often underestimates fungal diversity. Therefore, the need for accurate DNA sequence data, tied to both correct taxonomic names and clearly annotated specimen data, has never been greater. Furthermore, the growing number of molecular ecology and microbiome projects us...

For almost 2 centuries it has been disputed whether Tuber aestivum and Tuber uncinatum constitute two different species of truffles. Molecular markers have been applied previously to contribute to resolving this question, coming to different conclusions. In this study, we address this question by analyzing the genetic structure of truffles assigned...

The publication of a large number of taxon names at all levels within the arbuscular mycorrhizal fungi (Glomeromycota) has resulted in conflicting systematic schemes and generated considerable confusion among biologists working with these important plant symbionts. A group of biologists with more than a century of collective experience in the syste...

The Glomeromycota form a complex but extremely successful group of root symbionts that have accompanied land plants through evolution and survived across periods of important environmental change. They form a distinct, heterogeneous and unusual ensemble within the fungal kingdom which is characterized by obligate biotrophy, multinucleate nature, la...

Six DNA regions were evaluated as potential DNA barcodes for Fungi, the second largest kingdom of eukaryotic life, by a multinational, multilaboratory consortium. The region of the mitochondrial cytochrome c oxidase subunit 1 used as the animal barcode was excluded as a potential marker, because it is difficult to amplify in fungi, often includes l...

Communication orale invitée, résumé SPE IPM

The Glomeromycota form a complex but extremely successful group of root symbionts that have accompanied land plants through evolution and survived across periods of important environmental change. They form a distinct, heterogeneous and unusual ensemble within the fungal kingdom which is characterized by obligate biotrophy, multinucleate nature, la...

Six DNA regions were evaluated as potential DNA barcodes for Fungi , the second largest kingdom of eukaryotic life, by a multinational, multilaboratory consortium. The region of the mitochondrial cytochrome c oxidase subunit 1 used as the animal barcode was excluded as a potential marker, because it is difficult to amplify in fungi, often includes...

The relative importance of dispersal and niche restrictions remains a controversial topic in community ecology, especially for microorganisms that are often assumed to be ubiquitous. We investigated the impact of these factors for the community assembly of the root-symbiont arbuscular mycorrhizal fungi (AMF) by sampling roots from geothermal and no...

During the last decade, the application of arbuscular mycorrhizal fungi (AMF) as bioenhancers has increased significantly. However, until now, it has been difficult to verify the inoculation success in terms of fungal symbiont establishment in roots of inoculated plants because specific fungal strains could not be detected within colonized roots. U...

The main objective of this study was to shed light on the previously unknown arbuscular mycorrhizal fungal (AMF) communities in Southern Arabia. We explored AMF communities in two date palm (Phoenix dactylifera) plantations and the natural vegetation of their surrounding arid habitats. The plantations were managed traditionally in an oasis and acco...

Phylogenetic relationships of Sebacinales based on maximum likelihood analysis of partial nuclear-encoded ribosomal large subunit sequences. Color boxes indicate type of symbiosis. Sequences from fruitbodies or cultures that can be assigned to morphospecies are in bold. Circled numbers highlight sequences or clades that are mentioned in the article...

Analytical sample-based rarefaction curve of endophytic Sebacinales, derived from partial nuclear-encoded ribosomal large subunit sequences. Sequences are treated as samples, sequences of ≥99% similarity were assigned to the same sequence type. Confidence intervals are based on 1000 replicates. As the curve is still far from its saturation level, m...

Host plants from which endophytic Sebacinales were sequenced for this study and assignment to plant families. Sequences marked with an asterisk are from herbarium specimens collected in the 1830/40s by G.W. Schimper and T. Kotschy. (XLS)

Map of primers used for PCR and sequencing in the present study. The map is based on GenBank sequences AY505557 and DQ520096, primer lengths are not drawn to scale. The ruler gives number of base pairs, starting from the 5′ end of primer NS13. (PDF)

Inconspicuous basidiomycetes from the order Sebacinales are known to be involved in a puzzling variety of mutualistic plant-fungal symbioses (mycorrhizae), which presumably involve transport of mineral nutrients. Recently a few members of this fungal order not fitting this definition and commonly referred to as 'endophytes' have raised considerable...

This study aimed to assess AMF diversity in various plant species in lakes with low and relatively high P concentrations to elucidate possible correlations with environmental factors in order for better understanding the functioning of mycorrhizal fungi in submerged plants. A considerable diversity of AMF communities was observed in the lakes with...

The beneficial effects of arbuscular mycorrhizal (AM) fungi on plant performance and soil health are essential for the sustainable management of agricultural ecosystems. Nevertheless, since the 'first green revolution', less attention has been given to beneficial soil microorganisms in general and to AM fungi in particular. Human society benefits f...

Glomus intraradices, an arbuscular mycorrhizal fungus (AMF), is frequently found in a surprisingly wide range of ecosystems all over the world. It is used as model organism for AMF and its genome is being sequenced. Despite the ecological importance of AMF, little has been known about their population structure, because no adequate molecular marker...

The large subunit of the mitochondrial ribosomal RNA genes (mtLSU) has previously been identified as a highly sensitive molecular marker for intraspecies diversity in the arbuscular mycorrhizal fungus Glomus intraradices. In this study, the respective region was analyzed in five species of Glomus (G. mosseae, G. geosporum, G. caledonium, G. clarum,...

Two new arbuscular mycorrhizal fungal species, Glomus achrum sp. nov. and Glomus bistratum sp. nov. (Glomeromycota), are described and illustrated. Both species produce small, hyaline spores in aggregates formed in the soil and inside roots. Glomus achrum was associated with roots of Ammophila arenaria (L.) Link colonizing maritime dunes of the Vis...

Two new arbuscular mycorrhizal fungal species, Glomus achrum sp. nov. and Glomus bistratum sp. nov. (Glomeromycota), are described and illustrated. Both species produce small, hyaline spores in aggregates formed in the soil and inside roots. Glomus achrum was associated with roots of Ammophila arenaria ( L.) Link colonizing maritime dunes of the Vi...

Glomus intraradices is a widespread arbuscular mycorrhizal fungus (AMF), which has been found in an extremely broad range of habitats, indicating a high tolerance for environmental factors and a generalist life history strategy. Despite this ecological versatility, not much is known about the genetic diversity of this fungal species across differen...

The underground network of arbuscular mycorrhizal (AM) fungi is decisive for the above-ground diversity of many plant ecosystems, but tools to investigate the population structure of AM fungi are sorely lacking. Here, we present a bioinformatics approach to identify microsatellite markers in the AM fungus Glomus intraradices. Based on 1958 contigs...

To better understand adaptation of plants and their mycorrhizae to extreme environmental conditions, we analyzed the composition of communities of arbuscular mycorrhizal fungi (AMF) in roots from geothermal sites in Yellowstone National Park (YNP), USA. Arbuscular mycorrhizal fungi were identified using molecular methods including seven specific pr...

Comment on Multilocus genotyping of arbuscular mycorrhizal fungi and marker suitability for population genetics. [New Phytol. 2008] Genetic diversity and host plant preferences revealed by simple sequence repeat and mitochondrial markers in a population of the arbuscular mycorrhizal fungus Glomus intraradices. [New Phytol. 2008]

The community composition of arbuscular mycorrhizal fungi (AMF) was investigated in roots of four different plant species (Inula salicina, Medicago sativa, Origanum vulgare, and Bromus erectus) sampled in (1) a plant species-rich calcareous grassland, (2) a bait plant bioassay conducted directly in that grassland, and (3) a greenhouse trap experime...

The community composition of arbuscular mycorrhizal fungi (AMF) was analyzed in roots of Gentiana verna, Gentiana acaulis, and accompanying plant species from two species-rich Swiss alpine meadows located in the same area. The aim of the study was to elucidate the impact of host preference or host specificity on the AMF community in the roots. The...

In the early times of taxonomy of arbuscular mycorrhizal fungi (Glomeromycota), exclusively sporocarpic species were described. Since then the focus has mainly shifted to species forming spores singly. For many of the sporocarpic species, no molecular data have been made available, and their phylogenetic position has remained unclear. We obtained s...

The fungal symbionts of arbuscular mycorrhiza form a monophyletic group in the true Fungi, the phylum Glomeromycota. Fewer than 200 described species currently are included in this group. The only member of this clade known to form a different type of symbiosis is Geosiphon pyriformis, which associates with cyanobacteria. Because none of these fung...

The fungal symbionts of arbuscular mycorrhiza form a monophyletic group in the true Fungi, the phylum Glomeromycota. Fewer than 200 described species currently are included in this group. The only member of this clade known to form a different type of symbiosis is Geosiphon pyriformis, which associates with cyanobacteria. Because none of these fung...

Communities of arbuscular mycorrhizal fungi (AMF) in five agricultural field sites of different management intensities were studied. Variable regions of the ribosomal RNA genes were used to detect and identify AMF directly within colonized roots. Roots from a continuous maize monoculture showed low AMF diversity, in agreement with previous reports...

In their research article “Animal evolution and the molecular signature of radiations compressed in time” (23 Dec. 2005, p. [1933][1]), A. Rokas et al. present apparent differences in phylogenetic resolution within the animal and fungal kingdoms, using the same set of genes. They use these

Acaulospora alpina sp. nov. forms small (65–85 μm diam), dark yellow to orange-brown spores laterally on the neck of hyaline to subhyaline sporiferous saccules. The spores have a three-layered outer spore wall, a bi-layered middle wall and a three-layered inner wall. The surface of the second layer of the outer spore wall is ornamented, having regu...

Acaulospora alpina sp. nov. forms small (65-85 microm diam), dark yellow to orange-brown spores laterally on the neck of hyaline to subhyaline sporiferous saccules. The spores have a three-layered outer spore wall, a bi-layered middle wall and a three-layered inner wall. The surface of the second layer of the outer spore wall is ornamented, having...

Partial sequences of the mtLSU rDNA were obtained from the arbuscular mycorrhizal (AM) fungi Glomus proliferum (isolate DAOM 226389) and G. intraradices (isolates JJ291 and BEG75). The exon sequences of the two species showed regions of strong divergence. There was no evidence of intra-isolate sequence heterogeneity as it is found in variable regio...

Spores of the arbuscular mycorrhizal fungi (AMF) Glomus geosporum and Glomus constrictum were harvested from single-spore-derived pot cultures with either Plantago lanceolata or Hieracium pilosella as host plants. PCR-denaturing gradient gel electrophoresis analysis revealed that the bacterial communities associated with the spores depended more on...

Glomus badium forms small sporocarps with about 180-280 μm in diameter. The sporocarps have no peridum and contain 5-30 spores. The spores are situated around and partly within a whitish to yellowish gleba of interwoven intrasporocarpic hyphae. Spores are reddish brown to dark brown to black, globose, subglobose to ovoid, 51-90 x 75-120 μm in diame...

Molecular identification methods are about to revolutionize studies on ecology of arbuscular mycorrhiza. These techniques offer the unique opportunity to investigate communities of arbuscular mycorrhizal fungi (AMF) within roots. Recent technical advances are reviewed, discussing their drawbacks and advantages. An experimental approach to analyze A...

Over 400 non-photosynthetic species from 10 families of vascular plants obtain their carbon from fungi and are thus defined as myco-heterotrophs. Many of these plants are epiparasitic on green plants from which they obtain carbon by 'cheating' shared mycorrhizal fungi. Epiparasitic plants examined to date depend on ectomycorrhizal fungi for carbon...

Two filamentous fungi with different phenotypes were isolated from crushed healthy spores or perforated dead spores of the arbuscular mycorrhizal fungus (AMF) Scutellospora castanea. Based on comparative sequence analysis of 5.8S ribosomal DNA and internal transcribed spacer fragments, one isolate, obtained from perforated dead spores only, was ass...

We report structure and properties of fossil hyphae and spores from the Ordovician Guttenberg formation of Wisconsin. The fossils strongly resemble present-day arbuscular mycorrhizal fungi (Glomales) and are described as Palaeoglomus grayi gen. et spec. nov.

Over 400 non-photosynthetic species from 10 families of vascular plants obtain their carbon from fungi and are thus defined as myco-heterotrophs. Many of these plants are epiparasitic on green plants from which they obtain carbon by 'cheating' shared mycorrhizal fungi. Epiparasitic plants examined to date depend on ectomycorrhizal fungi for carbon...

Summary • We looked for evidence of mycelial survival by Suillus pungens and Amanita francheti following a stand-replacing wildfire. These species were selected because we had previously mapped and genotyped their fruiting bodies in the pre-fire forest. • Mycelial survival was investigated in two ways. First, we sampled seedlings in areas where the...

The fossil record and molecular data show that the evolutionary history of arbuscular mycorrhizal fungi (Glomales) goes back at least to the Ordovician (460 million years ago), coinciding with the colonization of the terrestrial environment by the first land plants. At that time, the land flora only consisted of plants on the bryophytic level. Ribo...

Molecular markers have facilitated a better understanding of the evolution of fungi. Molecular phylogenetics determined the closest relatives of fungi and defined natural groups within the true fungi. The impact of molecular markers on the population biology of fungi has been enormous, helping to define cryptic species and elucidating fungal breedi...

We determined the size of genets of late-stage ectomycorrhizal fungi in field sites in coastal Northern California. Basidiocarps were collected, mapped and subjected to genetic fingerprinting using amplified fragment length polymorphisms (AFLPs). The minimum size estimates for the largest genets of Amanita francheti, Lactarius xanthogalactus and Ru...

Two ancestral clades of arbuscular mycorrhizal fungal species were discovered from deeply divergent ribosomal DNA sequences. They are classified here as two new families Archaeosporaceae and Paraglomaceae. Each family is phylogenetically distant from each other and from other glomalean families, despite similarities in mycorrhizal morphology and fa...

Two ancestral clades of arbuscular mycorrhizal fungal species were discovered from deeply divergent ribosomal DNA sequences. They are classified here as two new families Archaeosporaceae and Paraglomaceae. Each family is phylogenetically distant from each other and from other glomalean families, despite similarities in mycorrhizal morphology and fa...

Fossilized fungal hyphae and spores from the Ordovician of Wisconsin (with an age of about 460 million years) strongly resemble modern arbuscular mycorrhizal fungi (Glomales, Zygomycetes). These fossils indicate that Glomales-like fungi were present at a time when the land flora most likely only consisted of plants on the bryophytic level. Thus, th...