Diego Bogarín

• Ph.D Biology
• Researcher at University of Costa Rica

The Andean mountains of South America are the most species-rich biodiversity hotspot worldwide with c. 15% of the world’s plant species, in only 1% of the world’s land surface. Orchids are a key element of the Andean flora, and one of the most prominent components of the Neotropical epiphyte diversity, yet very little is known about their origin an...

Panama is still far from completing its orchid flora inventories, where large genera such as Lepanthes (Pleurothallidinae) reveal novelties regularly. Here, we describe and illustrate two new species of Lepanthes. Lepanthes aures-ursinae is similar to L. micellilabia but differs by the orbicular-ovate, obtuse, convex leaves, larger sepals 2.7–3.0 ×...

The Orchidaceae is one of the most diverse vascular plant families in the Neotropics and the most diverse in Panama. The number of species is triple that of other well-represented families of angiosperms such as Rubiaceae, Fabaceae and Poaceae. Despite its importance in terms of diversity, the latest checklist was published ten years ago and the la...

The Swiss botanist Adolphe Tonduz worked in Costa Rica from 1889 to 1920. For 20 years he carried out important activities as a plant collector and the curator of the largest Costa Rican herbarium beginning at the Instituto Físico-Geográfico Nacional, and later at the National Museum. A large number of new species of Orchidaceae are found among his...

A new species of Brachionidium from Costa Rica is described and illustrated. Brachionidium cornu-nigricum, from the Volcán Cacho Negro, a remote, previously unexplored location in Costa Rica, is most similar to B. filamentosum. It differs in the white sepals, short-acuminate sepals and petals up to 1 cm long, the triangular, unlobed lip, the oblong...

Edible terrestrial orchids are endangered worldwide due to overharvesting and illegal trade. One method to distinguish illegally traded wild-collected orchids from sustainably harvested and legally traded cultivated ones is to artificially create hybrids that do not occur naturally and can be morphologically recognized. Creating artificial orchid h...

Lepanthes is a diverse Neotropical genus within the Orchidaceae and a significant component of Costa Rica's orchid flora. Despite extensive taxonomic studies, an ongoing need persists to explore and document the diversity of Lepanthes in unexplored regions of the country, such as the Cordillera Volcánica Central and Braulio Carrillo National Park....

This is the literature cited section for the Pollination List thru 2024. It is available as a word file via zenodo repository (see doi)

This file is an update through 2024 of orchid pollination data the supplemental material for Ackerman et al. (2023) Beyond the various contrivances by which orchids are pollinated: global patterns in orchid pollination biology. Botanical Journal of the Linnean Society 202: 295-324. It is available as an excel file from the data repository, zenodo....

Orchidaceae is one of the most prominent flowering plant families, with many species exhibiting highly specialized reproductive and ecological adaptations. An estimated 10% of orchid species in the American tropics are pollinated by scent-collecting male euglossine bees; however, to date, there are no published genomes of species within this pollin...

The fourth release of the series "New Species and Records of Orchidaceae from Costa Rica" documents and illustrates 17 taxa of the Costa Rican orchid flora. The new species records belong to the subtribes Pleurothallidinae (9 spp.), Maxillariinae (3 spp.), and Oncidiinae (2 spp.), including the description of two new species in Pleurothallis and Te...

Orchidaceae, a highly diverse family of angiosperms, exhibits remarkable ecological and morphological adaptations, with most of its species being epiphytic or terrestrial. Nonetheless, their occurrence in aquatic and wetland habitats in the tropics is relatively uncommon, with only a few species adapted to these environments. Consequently, our curr...

Una guia práctica para la confección de láminas de disección digitales de plantas, con énfasis en Orchidaceae.

The Neotropical genus Telipogon (Orchidaceae: Oncidiinae), comprising approximately 250 species, exhibits remarkable species diversity in the humid, montane forests of southern Central America and the Tropical Andes. Telipogon, when broadly defined, encompasses both the large-flowered species that mimic tachinid flies and the small-flowered species...

Orchids constitute one of the most spectacular radiations of flowering plants. However, their origin, spread across the globe, and hotspots of speciation remain uncertain due to the lack of an up‐to‐date phylogeographic analysis. We present a new Orchidaceae phylogeny based on combined high‐throughput and Sanger sequencing data, covering all five s...

This study presents an updated comprehensive catalogue of the Costa Rican orchid flora. We have documented 1684 species, four subspecies, 14 natural hybrids, and seven forms across 201 genera and two nothogenera, × Bensteinia and × Cochlezella. All Orchidaceae subfamilies are represented except for Apostasioideae. The subtribe Pleurothallidinae acc...

Orchid seeds are predominantly wind-dispersed, often developed within dry, dehiscent fruits that typically release millions of dust-like seeds into the air. Animal-mediated seed dispersal is a lesser-known phenomenon in the family and predominantly occurs in groups belonging to early-diverging lineages bearing indehiscent, fleshy fruits with hard,...

Fruits play a crucial role in seed dispersal. They open along dehiscence zones. Fruit dehiscence zone formation has been intensively studied in Arabidopsis thaliana. However, little is known about the mechanisms and genes involved in the formation of fruit dehiscence zones in species outside the Brassicaceae. The dehiscence zone of A. thaliana cont...

What grows where? Knowledge about where to find particular species in nature must have been key to the survival of humans throughout our evolution. Over time, and as people colonised new land masses and habitats, interactions with the local biota led to a wealth of combined traditional and scientific wisdom about the distributions of species and th...

Orchids constitute one of the most spectacular radiations of flowering plants. However, their geographical origin, historical spread across the globe, and hotspots of speciation remain uncertain due to the lack of a broad phylogenomic framework. ⍰ We present a new Orchidaceae phylogeny based on high-throughput and Sanger sequencing datasets, coveri...

Rudolf Schlechter (1872–1925) described several orchid taxa based on specimens collected in Costa Rica during the first half of the 20th century. Unfortunately, the type material kept at the Botanical Museum of Berlin-Dahlem (B) was destroyed in the bombing of Berlin, Germany, in 1943. To complete the typification of names proposed by Schlechter, b...

The alcohol-insoluble residue in Vanilla dressleri, V. odorata, V. planifolia and V. pompona mature leaves was fractionated into water-, oxalate-, HCl- and NaOH-soluble pectins, hemicellulose and lignocellulose. Neutral sugars and uronic acids of each fraction were determined by high-performance anion exchange chromatography-pulsed amperometric det...

Orchidaceae show remarkable diversity in pollination strategies, but how these strategies vary globally is not entirely clear. To identify regions and taxa that are data-rich and lend themselves to rigorous analyses or are data-poor and need attention, we introduce a global database of orchid reproductive biology. Our database contains > 2900 speci...

Orchidaceae show remarkable diversity in pollination strategies, but how these strategies vary globally is not entirely clear. To identify regions and taxa that are data-rich and lend themselves to rigorous analyses or are data-poor and need attention, we introduce a global database of orchid reproductive biology. Our database contains > 2900 speci...

A species new to science of a miniature orchid, endemic to the humid Pacific lowland, Municipality of Buenaventura (Valle del Cauca, Colombia), is described and illustrated. Ophidion erectilabrum sp. nov. is morphologically similar to O. alphonsianum, but the new species is recognized by the orbicular leaves (vs. elliptic), the erect inflorescence,...

Echinosepala truncata is described as new to science and illustrated from the holotype. It is compared with E. tomentosa , from which it differs by the sparsely lanate ovary, the narrowly obovate, apically rounded synsepal, the spathulate, apically and basally rounded petals, and the rectangular, apically truncate lip. The phylogenetic relationship...

Identifying the mechanisms for seed dispersal and persistence of species is a central aim of ecology. Seed dispersal by animals is an essential form of dissemination in many plant communities, including seeds of over 66% of neotropical canopy tree species. 1 ,2 Besides physical dispersal, animals influence seed germination probabilities through sca...

This list is the basis for a paper that we have submitted, "Beyond the various contrivances by which orchids are pollinated: global patterns in orchid pollination biology." Abstract: The Orchidaceae shows remarkable diversity in pollination strategies but how these strategies vary globally is not entirely clear. To identify regions and taxa that a...

In Panama, the Orchidaceae comprise 187 genera, of which one of the most conspicuous is Sobralia. The flowers of Sobralia are mostly ephemeral but colorful, often fragrant, and of variable sizes. Despite being a prominent group, its taxonomy is still underdeveloped in most neotropical countries. To continue with taxonomic studies in the Orchidaceae...

A new species of Acianthera from the relict cloud forests of Valle del Cauca, Colombia is described and illustrated. This new species, Acianthera hagsateri, morphologically resembles A. geminicaulina, A. decurrens, and A. erythrogramma, but differs from them by its shorter plants and stems, the elliptic and obtuse smaller leaves, the racemose, 1–3...

The typification of 53 orchid species described by Rudolf Schlechter based on specimens gathered in Costa Rica by Paul (Pablo) Biolley, Juan José Cooper Sandoval, Auguste R. Endrés, Carl Hoffmann, Emel Jiménez Segura, Otón Jiménez, Friedrich Carl Lehmann, Ferdinand Nevermann, Richard Pfau, and Henry Pittier in the late 19th and early 20th centuries...

Phalaenopsis is an important ornamental pot plant for the global horticultural market. The inflorescences of Phalaenopsis horticultural hybrids require support from a stick during plant cultivation because of the weight of multiple large flowers. Developing a horticultural hybrid with a sufficiently lignified inflorescence stem that does not requir...

The Andes are the world's most biodiverse mountain chain, encompassing a complex array of ecosystems from tropical rainforests to alpine habitats. We provide a synthesis of Andean vascular plant diversity by estimating a list of all species with publicly available records, which we integrate with a phylogenetic dataset of 14 501 Neotropical plant s...

The Northern Andean Cordillera in Colombia hosts unique, megadiverse, and fragile ecosystems, including wet tropical lowland, cloud forest, and paramo that are essential for climate regulation and the subsistence of human settlements. The Serrania de Los Paraguas on the Pacific slope of the western range of the Northern Andes, Colombia, is an ecosy...

Premise: The inference of evolutionary relationships in the species-rich family Orchidaceae has hitherto relied heavily on plastid DNA sequences and limited taxon sampling. Previous studies have provided a robust plastid phylogenetic framework, which was used to classify orchids and investigate the drivers of orchid diversification. However, the e...

The date palm, Phoenix dactylifera, has been a cornerstone of Middle Eastern and North African agriculture for millennia. It was first domesticated in the Persian Gulf, and its evolution appears to have been influenced by gene flow from two wild relatives, P. theophrasti, currently restricted to Crete and Turkey, and P. sylvestris, widespread from...

Barra Honda National Park (BHNP) lies in the Tempisque River Basin of the Península de Nicoya, Guanacaste, Costa Rica. The Park is well known for its limestone caverns, which date from the Upper Paleocene–Lower Eocene and are the main attraction of BHNP. The area shows a marked climatic seasonality with a predominantly semideciduous tropical dry fo...

We discuss a group of Pleurothallis species mostly characterized by plants relatively tall for the genus, with stems more than 20 cm long and fasciculate inflorescences produced above the leaf from a spathaceous, sometimes erect bract. We recognize 26 species and 4 natural hybrids in Costa Rica in this group of Pleurothallis, belonging to 4 informa...

A new species of Muscarella from Costa Rica, is described and illustrated.

A new species of Muscarella from Costa Rica, is described and illustrated. Muscarella tapantiensis most resembles M. coeloglossa but differs in the longer pedicels (3-5 vs. 1-2 mm), the shorter (2.5-2.8 vs. 3.75 mm), connate (vs. free) lateral sepals, and the lip with triangular (vs. broadly rounded) lower lateral lobes. Muscarella xanthella also r...

Recent phylogenomic analyses based on the maternally inherited plastid organelle have enlightened evolutionary relationships between the subfamilies of Orchidaceae and most of the tribes. However, uncertainty remains within several subtribes and genera for which phylogenetic relationships have not ever been tested in a phylogenomic context. To addr...

Necklace orchids (Coelogyninae, Epidendroideae) have been used in traditional medicine practices for centuries. Previous studies on a subset of unrelated orchid species utilized in these traditional practices revealed they possessed antimicrobial, anti-inflammatory, and anti-oxidant activity, providing experimental proof for their medicinal propert...

Lepanthes is one of the most species-rich genera of orchids in the Neotropics, with most of the species found in medium to high elevation forests and few species in lowlands. We describe and illustrate Lepanthes osaensis, a new species from the very wet lowland forest of Península de Osa, Costa Rica. It is similar to Lepanthes cuspidata but differs...

We provide a general introduction to the prodromi to Flora Costaricensis, and an introduction to the precursors of subtribe Pleurothallidinae. We present a systematic revision of the genus Echinosepala for the flora of Costa Rica and a detailed discussion of molecular evidence with regard to most Costa Rican taxa, aimed at phylogenetically framing...

The date palm ( Phoenix dactylifera ) has been a cornerstone of Middle Eastern and North African agriculture for millennia. It is presumed that date palms were first domesticated in the Persian Gulf and subsequently introduced into North Africa, where their evolution in the latter region appears to have been influenced by gene flow from the wild re...

Premise of the study Evolutionary relationships in the species-rich Orchidaceae have historically relied on organellar DNA sequences and limited taxon sampling. Previous studies provided a robust plastid-maternal phylogenetic framework, from which multiple hypotheses on the drivers of orchid diversification have been derived. However, the extent to...

Eurystyles comprises about 23 species ranging from Mexico to northern Argentina. Six species are recognized in Mexico and Central America and three in Costa Rica. A new species, named E. uxoris , is here described and illustrated based on Costa Rican material. The species is similar to Eurystyles auriculata and E. standley i, however, it differs by...

This paper focuses on the taxonomy and systematics of the species related to Specklinia brighamii and S. simmleriana in Costa Rica. The group also includes S. alexii, recorded for the first time for the country, S. acrisepala, and two newly described taxa, S. barbelifera and S. tirimbina. The six taxa are described on the basis of living material a...

Poor morphological and molecular differentiation in recently diversified lineages is a widespread phenomenon in plants. Phylogenetic relationships within such species complexes are often difficult to resolve because of the low variability in traditional molecular loci. Furthermore, biological phenomena responsible for topological incongruence such...

Lepanthes is one of the most species-rich genera of angiosperms in the neotropics. Here, we describe and illustrate two new species of Lepanthes from Caribbean lowlands of Costa Rica. Lepanthes crucitasensis, sp. nov. resembles L. confusa, from which it can be distinguished by longer and wider leaves and flowers with entire margin sepals, longer la...

Extremely high levels of plant diversity in the American tropics are derived from multiple interactions between biotic and abiotic factors. Previous studies have focused on macro-evolutionary dynamics of the Tropical Andes, Amazonia, and Brazil’s Cerrado and Atlantic forests during the last decade. Yet, other equally important Neotropical biodivers...

Taxonomic delimitations are challenging because of the convergent and variable nature of phenotypic traits. This is evident in species-rich lineages, where the ancestral and derived states and their gains and losses are difficult to assess. Phylogenetic comparative methods help to evaluate the convergent evolution of a given morphological character...

Taxonomic delimitations are challenging because of the convergent and variable nature of phenotypic traits. This is evident in species-rich lineages, where the ancestral and derived states and their gains and losses are difficult to assess. Phylogenetic comparative methods help to evaluate the convergent evolution of a given morphological character...

We investigated the pollination of Habenaria tridactylites, an endemic orchid of the Canary Islands. The entirely green, widely open flowers have a long spur containing nectar. In this study, we carried out fieldwork, a molecular clock analysis, herbarium surveys and measured the length of orchid floral spurs and insect tongues using a combination...

Poor morphological and molecular differentiation in recently diversified lineages is a widespread phenomenon in plants. Phylogenetic relationships within such species complexes are often difficult to resolve because of the low variability in traditional molecular loci, as well as various other biological phenomena responsible for topological incong...

Poor morphological and molecular differentiation in recently diversified lineages is a widespread phenomenon in plants. Phylogenetic relationships within such species complexes are often difficult to resolve because of the low variability in traditional molecular loci, as well as various other biological phenomena responsible for topological incong...

Species Orchidacearum is a serial publication. It is published in volumes, freely available online, and peer-reviewed. Icons from any author are received, they may treat any species of the Orchidaceae family, from any country, previously published or not, as long as they comply with the author’s instructions. The main goal of the series is to make...

Maxillariella prostrata, a new species from Costa Rica and Panama is described and illustrated. This species is similar to M. acervata but differs in having a prostrate habit, elliptic leaves up to 2 cm long, pseudobulbs with two unequal apical leaves, one larger and the other smaller, a red-spotted lip, the column apex entire, and the pollinarium...

Phylogenetic relationships in species complexes and lineages derived from rapid diversifications are often challenging to resolve using morphology or standard DNA barcoding markers. The hyper-diverse genus Lepanthes from Neotropical cloud forest includes over 1200 species and many recent, explosive diversifications that have resulted in poorly supp...

Pleurothallidinae (Epidendreae) are a megadiverse Neotropical orchid subtribe comprising > 5100 species, most of which are probably pollinated by Diptera. The role of pollinators as drivers of species diversity is largely unknown because knowledge of pollination systems in Pleurothallidinae is still scarce. Here, we addressed the pollination of Tri...

A new species, Telipogon sonia-juaniorum, from the semi-deciduous montane forests from Southwestern Ecuador is described and illustrated. Information about distribution, habitat, phenology, and conservation status for the new species is provided. The new proposed taxon is morphologically similar to T. standleyi from which it differs by its elliptic...

We propose a new classification of the Lepanthes affinity based on previous studies and our ongoing phylogenetic re-evaluation of the Pleurothallidinae. Fourteen genera are recognized as belonging to the affinity. They are found highly supported in a DNA-based phylogenetic inference of combined plastid (matK) and nuclear (nrITS) datasets. The neces...

Subtribe Angraecinae (Orchidaceae: Vandeae) are mainly distributed in Africa, but with two genera, Campylocentrum and Dendrophylax, restricted to the Neotropics. As a widespread Neotropical genus, Campylocentrum constitutes an appropriate model for revealing biogeographical patterns in this area and investigating routes of colonization and dispersa...

Pleurothallidinae (Epidendreae) are a megadiverse Neotropical orchid subtribe comprising > 5100 species, most of which are probably pollinated by Diptera. The role of pollinators as drivers of species diversity is largely unknown because knowledge of pollination systems in Pleurothallidinae is still scarce. Here, we addressed the pollination of Tri...

Proceedings of the 18th EOCC

Se describe e ilustra Masdevallia luerorum del Pacífico sur de Costa Rica. Es similar a M. lata, pero difiere en la infloresencia uniflora, los sépalos más cortos, el tubo sepalino amplio y cilíndrico un mentón más pequeño debajo del pie de la columna, un mentón secundario más corto, una ligera deflexión entre ambos mentones, y el labelo con pliegu...

Two new species of Platystele allied to P. oxyglossa complex are described from Costa Rica. Platystele carl-lueriana can be distinguished from P. catiensis and P. oxyglossa by the compact inflorescence that barely exceeds the leaf, from P. pedicellaris by the large plants with long leaves and small flowers, and from P. tausensis by the yellowish se...

• The Andean mountains of South America are the most species-rich biodiversity hotspot worldwide with about 15% of the world’s plant species, in only 1% of the world’s land surface. Orchids are a key element of the Andean flora, and one of the most prominent components of the Neotropical epiphyte diversity, yet very little is known about their orig...

Abstract. The Swiss botanist Adolphe Tonduz worked in Costa Rica from 1889 to 1920. For 20 years he carried out important activities as a plant collector and the curator of the largest Costa Rican herbarium beginning at the Instituto Físico-Geográfico Nacional, and later at the National Museum. A large number of new species of Orchidaceae are found...

The phylogenetic relationships within the Acianthera affinity are re-evaluated using Bayesian analyses of nrITS and chloro- plast matK sequence data. Emphasis is made on species from the Antilles, Central America and the Andean South America as those have been less represented in previous studies. Acianthera is retrieved largely monophyletic, but i...

The phylogenetic relationships within Specklinia (Pleurothallidinae; Orchidaceae) and related genera are re-evaluated using Bayesian analyses of nrITS and chloroplast matK sequence data of a wide sampling of species. Specklinia is found paraphyletic in the DNA based trees, with species alternatively assigned to Muscarella proven distinct, monophyle...

Se describe e ilustra una nueva especie de Masdevallia de Colombia. M.jaderi es similar a M.angulifera, de la cual se distingue principalmente por las porciones libres de los sépalos estrechamente triangulares, mas de dos veces mas largas que anchas.

Historically, the isthmus of Costa Rica and Panama has been a source of fascination for its strategic position linking North America to South America. In terms of biodiversity, the isthmus is considered one of the richest regions in the world. Orchidaceae is the most diverse plant family in the area, and the number of species is triple that of othe...

Abstract. Campylocentrum amistadense Bogarín, a new orchid species from La Amistad International Park in Puntarenas, Costa Rica, is described and illustrated. It is most similar to C. brenesii Schltr., but differs in having linear, thin, subcoriaceous leaves, and glabrous perianth parts and inflorescence. The flowers are parallel to the infloresce...

The present paper focuses on the systematics of the Specklinia glandulosa species complex. Traditionally, S. glandulosa has been considered a widely distributed and variable species, ranging from Mexico to the guiana Shield. Here it is treated as one of at least six different, albeit closely related, species. of these species, S. pertenuis and S. v...

Specklinia lugduno-batavae from the Caribbean lowlands of Nicaragua and Costa Rica is formally described and illustrated. The new species belongs to the Specklinia digitalis group and can be recognised by the creeping habit, purple spotted abaxial surface of the leaf and the almost immaculate whitish cream flowers, which are produced in succession...

New species of Lepanthes (Pleurothallidiinae: Orchidaceae) are described from Cordillera de Talamanca, Costa Rica

We describe and illustrate a new species of Prosthechea from Costa Rica. The species is similar to Prosthechea ionocentra, but it is easily distinguishable by its inflorescence originating from the penultimate mature pseudobulb; its purple spotted sepals and petals; the cordate, acute labellum; the disc with two longer, narrower keels; the stigmati...

Abstract— A new species, Reichantha jorge-warneri , from the Atlantic plains of Nicaragua and Costa Rica is described and illustrated. The species is similar to Reichantha tonduzii, but can be distinguished by its reddish inflorescence and ovary, glabrous sepals that are stained with red at the base and are distinctly shorter, lateral sepals with...