David Wilby

David Wilby
British Antarctic Survey | BAS

BSc (Bath) PhD (Bristol)

About

30
Publications
8,666
Reads
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339
Citations
Introduction
Research Software Engineer at the British Antarctic Survey.
Additional affiliations
April 2018 - April 2019
Lund University
Position
  • PostDoc Position
Description
  • Working with Dr. Emily Baird on the optics of bumblebee ocelli.
October 2015 - April 2016
University of Bristol
Position
  • Masters student supervisor
April 2015 - July 2015
Lund University
Position
  • Visiting Research Scientist
Education
September 2014 - October 2014
Lund University
Field of study
  • Sensory Ecology
September 2011 - February 2015
University of Bristol
Field of study
  • Optics of the Avian Retina
September 2010 - August 2011
University of Bristol
Field of study
  • Doctoral Training Program in Nanoscience

Publications

Publications (30)
Article
Full-text available
Polarization vision is used by a wide range of animals for navigating, orienting, and detecting objects or areas of interest. Shallow marine and semi-terrestrial crustaceans are particularly well known for their abilities to detect predator-like or conspecific-like objects based on their polarization properties. On land, some terrestrial invertebra...
Article
Both vertebrates and invertebrates commonly exploit photonic structures adjacent to their photoreceptors for visual benefits. For example, use of a reflecting structure (tapetum) behind the retina increases photon capture, enhancing vision in dim light. Colored filters positioned lateral or distal to a photoreceptive unit may also be used to tune s...
Preprint
Full-text available
Many insects have triplets of camera type eyes, called ocelli, whose function remains unclear for most species. Here, we investigate the ocelli of the bumblebee, Bombus terrestris , using reconstructed 3D data from X-ray micro computed-tomography scans combined with computational ray-tracing simulations. This method enables us, not only to predict...
Article
Animals can make use of camouflage to reduce the likelihood of visual detection or recognition and thus improve their chances of survival. Background matching, where body colouration is closely matched to the surrounding substrate, is one form of camouflage. Hermit crabs have the opportunity to choose their camouflage independently of body colourat...
Article
Full-text available
In "Polarisation vision: overcoming challenges of working with a property of light we barely see" (Foster et al. 2018) we provide a basic description of how Stokes parameters can be estimated and used to calculate the angle of polarisation (AoP).
Article
Full-text available
In recent years, the study of polarisation vision in animals has seen numerous breakthroughs, not just in terms of what is known about the function of this sensory ability, but also in the experimental methods by which polarisation can be controlled, presented and measured. Once thought to be limited to only a few animal species, polarisation sensi...
Preprint
In recent years, the study of polarization vision in animals has seen numerous breakthroughs, not just in terms of what is known about the function of this sensory ability, but also in the experimental methods by which polarization can be controlled, presented and measured. Once thought to be limited to only a few animal species, polarization sensi...
Article
Full-text available
Many animals use structural coloration to create bright and conspicuous visual signals. Selection of the size and shape of the optical structures animals use defines both the colour and intensity of the light reflected. The material used to create these reflectors is also important; however, animals are restricted to a limited number of materials:...
Article
Full-text available
Oil droplets are spherical organelles found in the cone photoreceptors of vertebrates. They are generally assumed to focus incident light into the outer segment, and thereby improve light catch because of the droplets' spherical lens-like shape. However, using full-wave optical simulations of physiologically realistic cone photoreceptors from birds...
Article
Full-text available
Color guides many important behaviors in birds. Previously we have shown that the intensity threshold for color discrimination in the chicken depends on the color contrast between stimuli and their brightness. The birds could discriminate larger color contrasts and brighter colors in lower light intensities. We suggested that chickens use spatial s...
Article
Full-text available
Light rays of different wavelengths are focused at different distances when they pass through a lens (longitudinal chromatic aberration [LCA]). For animals with color vision this can pose a serious problem, because in order to perceive a sharp image the rays must be focused at the shallow plane of the photoreceptor’s outer segments in the retina. A...
Data
The PCR primers used in studies of enzyme function and expression. (a) PCR primers used to clone in situ hybridization templates. (b) Primers used for qPCR quantification of apocarotenoid-metabolizing enzyme transcript expression in developing chicken retinas. (c) PCR primers used to clone full-length transcripts of apocarotenoid-metabolizing enzym...
Data
The number of discriminable colors predicted using the receptor noise-limited model with species-specific ocular media transmittance, spectral sensitivity measures, and varying positions of the C-type oil droplet filtering cutoff.The increment spectral sensitivity values calculated for the 11 UVS and 7 VS species with matched and mismatched C-type...
Data
The species included in our phylogenetic comparison of retina apocarotenoid composition. The tuning of the SWS1 opsin is inferred from the amino acid at position 90 of the second transmembrane helix (Ödeen and Håstad, 2013; 2009). The amino acid sequence was either derived from previously published studies or was determined by sequencing of genomic...
Data
The measured oil droplet spectra, pure carotenoid spectra, and model fit parameters for each measured C-type droplet.DOI: http://dx.doi.org/10.7554/eLife.15675.011
Data
The species and visual system parameters used to model avian color discrimination. DOI: http://dx.doi.org/10.7554/eLife.15675.021
Data
Apocarotenoid concentration and transcript expression levels for each biological and technical replicate.DOI: http://dx.doi.org/10.7554/eLife.15675.016
Article
Full-text available
ELife digest The pioneering eye doctor André Rochon-Duvigneaud once wrote that “a bird is a wing guided by an eye”. With this statement, he underscored the sophistication of the bird’s eye, which surpasses our own in several respects. Compared to humans who have three types of cone photoreceptor, birds have four, meaning they can see an extra dimen...
Article
Full-text available
Colour constancy is the capacity of visual systems to keep colour perception constant despite changes in the illumination spectrum. Colour constancy has been tested extensively in humans and has also been described in many animals. In humans, colour constancy is often studied quantitatively, but besides humans, this has only been done for the goldf...
Article
Full-text available
Many biophotonic structures have their spectral properties of reflection ‘tuned’ using the (zeroth-order) Bragg criteria for phase constructive interference. This is associated with a periodicity, or distribution of periodicities, parallel to the direction of illumination. The polarization properties of these reflections are, however, typically con...
Article
Full-text available
Vision is the primary sensory modality of birds, and its importance is evident in the sophistication of their visual systems. Coloured oil droplets in the cone photoreceptors represent an adaptation in the avian retina, acting as long-pass colour filters. However, we currently lack understanding of how the optical properties and morphology of compo...
Thesis
Full-text available
Avian vision is among the most highly developed of all animals. Birds utilise fine spatial acuity and colour discrimination, visual abilities mediated by a set of six photoreceptor types. The single cones and double cones, used in chromatic vision and achromatic motion perception respectively, include structural adaptations which govern their optic...
Conference Paper
Photon absorption is the primary event in vision. Whilst the sensitivity of an eye is governed by a number of factors, one of the most fundamental is the quantum efficiency of the photon absorption. Previous measurements have investigated whether insect retinal cells are capable of detecting single photons1. The results suggest a process of photon...

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