David M Paterson

University of St Andrews · School of Biology

Sediment fluxes in aquatic environments are crucially dependent on bedform dynamics. However, sediment-flux predictions rely almost completely on clean-sand studies, despite most environments being composed of mixtures of non-cohesive sands, physically cohesive muds and biologically cohesive extracellular polymeric substances (EPS) generated by mic...

Culturing experiments were performed on sediment samples from the Ythan Estuary, N. E. Scotland, to assess the impacts of ocean acidification on test surface ornamentation in the benthic foraminifer Haynesina germanica. Specimens were cultured for 36 weeks at either 380, 750 or 1000 ppm atmospheric CO2. Analysis of the test surface using SEM imagin...

Rising global temperatures are often identified as the key driver impacting ecosystems and the services they provide by affecting biodiversity structure and function. A disproportionate amount of our understanding of biodiversity and function is from short‐term experimental studies and static values of biodiversity indices, lacking the ability to m...

Offshore oil and gas platforms (OGP) have been installed worldwide and initially with limited consideration given to the nature of their positive or negative long-term interactions with the natural marine habitats. However, as OGP reach the end of their useful life, with many being decommissioned and removed, it is timely to review the growing evid...

There is an urgent need to address coastal dynamics as a fundamental interaction between physical and biological processes, particularly when trying to predict future biological–physical linkages under anticipated changes in environmental forcing. More integrated modelling, support for observational networks and the use of management interventions...

In November 2022, the Scottish Government and JNCC co-hosted an online workshop called “Exploring an integrated approach towards a sustainable blue economy”. Attended by representatives of UK governments and conservation bodies, academics, and business and finance partners, the workshop aimed to explore a blue economy approach that accounts for the...

The microphytobenthos that form transient biofilms are important primary producers in intertidal, depositional habitats, yet we have only a limited understanding of how they respond to the cumulative impacts of the growing range of anthropogenic stressors to which they are exposed. We know even less about how the temporal alignment of exposure-such...

The biodiversity of marine and coastal habitats is experiencing unprecedented change. While there are well-known drivers of these changes, such as overexploitation, climate change and pollution, there are also relatively unknown emerging issues that are poorly understood or recognized that have potentially positive or negative impacts on marine and...

Offshore platforms, subsea pipelines, wells and related fixed structures supporting the oil and gas (O&G) industry are prevalent in oceans across the globe, with many approaching the end of their operational life and requiring decommissioning. Although structures can possess high ecological diversity and productivity, information on how they intera...

We report on the progress to assess the carbon stocks in UK saltmarsh habitats, highlighting best practice in achieving national-scale assessments, including advances in field, laboratory and data methods. New understanding of coring disturbance highlights sediment compaction and its influence on carbon stock assessment; improvements in remote sens...

The effect of bedforms on frictional roughness felt by the overlying flow is crucial to the regional modelling of estuaries and coastal seas. Bedforms are also a key marker of palaeoenvironments. Experiments have shown that even modest biotic and abiotic cohesion in sand inhibits bedform formation, modifies bedform size, and slows bedform developme...

Cultural ecosystem services (CES), a key aspect of nature's contributions to people, remain a challenge to incorporate into decision making. One contributing factor is the difficulty of defining and describing these, due partly to: ongoing poor understanding of what drives people to interact with nature, a lack of appropriate data to quantify these...

Ecology is complex and while there is a modern drive towards a holistic or “ecosystem approach” for managing marine systems, we are still a long way from fully understanding the interactions between the various components of different ecosystems and fully valuing their contributions. Microphytobenthos (MPB), and diatom biofilms, are an excellent ex...

Plain Language Summary The term “ecosystem engineering” emerged in the 1990s, which commonly refers to the activities of larger organisms like mangroves. However, while people think that bigger organisms generate bigger potential engineering effects, there may be microscale organisms who can result in significant impacts on the ecosystems through t...

Intertidal systems are complex and dynamic environments with many interacting factors influencing biochemical characteristics and microbial communities. One key factor are the actions of resident fauna, many of which are regarded as ecosystem engineers because of their bioturbation, bioirrigation and sediment stabilising activities. The purpose of...

This study focuses on the interactions between sediment stability and biological and physical variables that influence the erodibility across different habitats. Sampling at short‐term temporal scales illustrated the persistence of the microphytobenthos (MPB) biomass even during periods of frequent, high physical disturbance. The role of MPB in bio...

Sediment dwelling, microscopic primary producers, that occupy sediments in the photic zone, are commonly referred to as microphytobenthos (MPB). The MPB are essential components of soft‐sediment systems, but are often overlooked when assessing coastal ecosystem functionality and service delivery. The MPB are involved in several complex interactions...

Sediment gravity flows are the primary process by which sediment and organic carbon are transported from the continental margin to the deep ocean. Up to 40% of the total marine organic carbon pool is represented by cohesive extracellular polymeric substances (EPS) produced by microorganisms. The effect of these polymers on sediment gravity flows ha...

This e-poster outlines the development of an outdoor mesocosm system with the capacity to incorporate a tidal cycle. Primary challenges were to avoid pseudoreplication among mesocosm units, and to build the system as cost-effectively as possible.

Estuarine sediments are a reservoir for faecal bacteria, such as E. coli, where they reside at greater concentrations and for longer periods than in the overlying water. Faecal bacteria in sediments do not usually pose significant risk to human health until resuspended into the water column, where transmission routes to humans are facilitated. The...

Navigating the Future is a publication series produced by the European Marine Board providing future perspectives on marine science and technology in Europe. Navigating the Future V (NFV) highlights new knowledge obtained since Navigating the Future IV (2013). It is set within the framework of the 2015 Paris Agreement and builds on the scientific b...

Saltmarshes are biogeomorphic ecosystems comprising halophytic plant communities typically located on low energy temperate coasts. Their distribution and structure are controlled by several key drivers, including sediment supply, type of vegetation, elevation, and local hydrodynamics. These dynamic systems are highly vulnerable and estimated to be...

Navigating the Future is a publication series produced by the European Marine Board providing future perspectives on marine science and technology in Europe. Navigating the Future V (NFV) highlights new knowledge obtained since Navigating the Future IV1 (2013). It is set within the framework of the 2015 Paris Agreement2 and builds on the scienti c...

Poorly constrained uncertainties limit the prediction of medium to long-term regional sediment budgets and morphological change, and thus hinder coastal management decision-making. We present a multi-disciplinary approach that aims to address this challenge and is implemented in the BLUEcoast project. The approach brings together scientists and coa...

An overview of upcoming work on the cumulative effects of multiple marine stressors on microphytobenthic (MPB) biofilms from intertidal estuarine mudflats. Experiments are proposed which focus on investigating a range of singular stressor effects, identification of paired interactions, and the influence of stressor ordering and initial biofilm biom...

Microbiological water quality monitoring of bathing waters does not account for faecal indicator organisms in sediments. Intertidal deposits are a significant reservoir of FIOs and this indicates there is a substantial risk to bathers through direct contact with the sediment, or through the resuspension of bacteria to the water column. Recent model...

The shape and size of sedimentary bedforms play a key role in the reconstruction of sedimentary processes in modern and ancient environments. Recent laboratory experiments have shown that bedforms in mixed sand–clay develop at a slower rate and often have smaller heights and wavelengths than equivalent bedforms in pure sand. This is generally attri...

A notable feature of the Deepwater Horizon oil spill was the unprecedented formation of marine oil snow (MOS) that was observed in large quantities floating on the sea surface and that subsequently sedimented to the seafloor. Whilst the physical and chemical processes involved in MOS formation remain unclear, some studies have shown that extracellu...

Rarefaction curves of observed taxa between MOS and MDS aggregates.

The structure and resilience of benthic communities in coastal and estuarine ecosystems can be strongly affected by human mediated disturbances, such as nutrient enrichment, often leading to changes in a food webs function. In this study, we used the Ecopath model (EwE) to examine two case studies where deliberate management actions aimed at reduci...

Biofilm-sediment aggregate (BSA) contains a high water content, either within internal pores and channels, or bound by extracellular polymeric substances (EPS) forming a highly hydrated biofilm matrix. Desiccation of BSAs alters the biofilm morphology and thus the physical characteristics of porous media, such as the binding matrix within BSA and i...

Purpose The objective of this work is to better understand the role that biological mediation plays in the behaviour of fine sediments. This research is supported by developments in ecological theory recognising organisms as “ecosystem engineers” and associated discussion of “niche construction”, suggesting an evolutionary role for habitat modifica...

Despite a wealth of methods currently proposed by the European Water Framework Directive (WFD) to assess macro-benthic integrity, determining good ecological status (GES) and assessing ecosystem recovery following anthropogenic degradation is still one of the biggest challenges in marine ecology research. In this study, our aim was to test a number...

The Oslo and Paris Commissions (OSPAR) decision 98/3 prohibits the dumping of man-made structures (MMS) offshore. However, there are regions of the world where MMS are recognized as providing an ecological and societal benefit through the provision of ecosystem goods and services. This review provides a commentary on our current understanding of th...

The adhesiveness and stability of ubiquitously distributed biofilms is a significant issue in many areas such as ecology, biotechnology and medicine. The magnetic particle induction (MagPI) system allows precise determinations of biofilm adhesiveness at high temporal and spatial resolution on the mesoscale. This paper concerns several technical asp...

Marine sediments are important sites for global biogeochemical cycling, mediated by macrofauna and microalgae. However, it is the microorganisms that drive these key processes. There is strong evidence that coastal benthic habitats will be affected by changing environmental variables (rising temperature, elevated CO2), and research has generally fo...

Many coastal and estuarine environments are dominated by mixtures of non-cohesive sand and cohesive mud. The migration rate of bedforms, such as ripples and dunes, in these environments is important in determining bed material transport rates to inform and assess numerical models of sediment transport and geomorphology. However, these models tend t...

Motivation: The BioTIME database contains raw data on species identities and abundances in ecological assemblages through time. These data enable users to calculate temporal trends in biodiversity within and amongst assemblages using a broad range of metrics. BioTIME is being developed as a community-led open-source database of biodiversity time se...

Motivation: The BioTIME database contains raw data on species identities and abundances in ecological assemblages through time. These data enable users to calculate temporal trends in biodiversity within and amongst assemblages using a broad range of metrics. BioTIME is being developed as a community-led open-source database of biodiversity time se...

Motivation: The BioTIME database contains raw data on species identities and abundances in ecological assemblages through time. These data enable users to calculate temporal trends in biodiversity within and amongst assemblages using a broad range of metrics. BioTIME is being developed as a community led open-source database of biodiversity time se...

Many coastal and estuarine environments are dominated by mixtures of non-cohesive sand and cohesive mud. The migration rate of bedforms, such as ripples and dunes, in these environments is important in determining bed material transport rates to inform and assess numerical models of sediment transport and geomorphology. However, these models tend t...

The extent of pathogen transport to and within aquatic systems depends heavily on whether the bacterial cells are freely suspended or in association with suspended particles. The surface charge of both bacterial cells and suspended particles affects cell-particle adhesion and subsequent transport and exposure pathways through settling and resuspens...

The shape and size of sedimentary bedforms play a key role in the reconstruction of sedimentary processes in modern and ancient environments. Recent laboratory experiments have shown that bedforms in mixed sand–clay develop at a slower rate and often have smaller heights and lengths than equivalent bedforms in pure sand. This is generally attribute...

Motivation: The BioTIME database contains raw data on species identities and abundances in ecological assemblages through time. These data enable users to calculate temporal trends in biodiversity within and amongst assemblages using a broad range of metrics. BioTIME is being developed as a community-led open-source database of biodiversity time se...

The study of mudflats should logically start with the type of intertidal depositional shore we consider to be true mudflats, and then an overview of their global distribution. Their dominant feature being mud, we then consider the etymology and cognitive associations of the word ‘mud’, the basics of sediment composition and its living matrix, and t...

Ecosystem engineers play a fundamental role in the creation, maintenance and transformation of habitats in tidal flats. Highly diverse in terms of size, phylogeny, and effect on their environment, they can facilitate or hinder a number of organisms, but generally have a positive influence on both the abundance and the diversity of mudflat organisms...

Microphytobenthic biofilms in mudflats are characterised by a wide variety of microorganisms and the production of large quantities of extracellular polymeric substances (EPS). In this chapter, the diversity of microphytobenthos (MPB) is reviewed and the complex interactions that take place in mudflat biofilms between microalgae and bacteria are di...

Sediment gravity flows (SGFs) are the primary process by which sediment and organic carbon are transported from the continental margin to the deep ocean. Forty percent of the total marine organic carbon pool is represented by cohesive extracellular polymeric substances (EPS) produced by marine benthic and pelagic micro-organisms. EPS research to da...

Biofilms, consisting of microorganisms and their secreted extracellular polymeric substances (EPSs), serve as “ecosystem engineers” stabilizing sedimentary environments. Natural sediment bed provides an excellent substratum for biofilm growth. The porous structure and rich nutrients allow the EPS matrix to spread deeper into the bed. A series of la...

Accurate discrimination of two morphologically similar species of Patella limpets has been facilitated by using qPCR amplification of species-specific mitochondrial genomic regions. Cost-effective and non-destructive sampling is achieved using a mucus swab and simple sample lysis and dilution to create a PCR template. Results show 100% concurrence...