David O'Brien

David O'Brien
Scottish Natural Heritage · Biodiversity and Geodiversity

Doctor of Philosophy

About

71
Publications
35,107
Reads
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924
Citations
Citations since 2017
59 Research Items
917 Citations
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Introduction
I manage NatureScot's (SNH) Evidence and Reporting, and Terrestrial Vascular Plant teams. This includes conservation of wild plants, and development and production of indicators such as Ecosystem Health Indicators and Convention on Biological Diversity reports. This work relies heavily on citizen science. I work with colleagues on conservation of genetic diversity, urban biodiversity and evidence-based conservation. Outside of work, my research is mainly on reptiles and amphibians. .
Additional affiliations
October 2019 - present
Royal Botanic Garden Edinburgh
Position
  • Research Associate
June 2018 - present
Scottish Universities Green Infrastructure Research Group
Position
  • Member
May 2018 - present
GEO-BON
Position
  • Member
Description
  • Measuring genetic biodiversity conservation progress for informing policy makers and practitioners.
Education
December 2019 - December 2021
University of Salford
Field of study
  • Ecology
September 2004 - September 2010
University of Bath
Field of study
  • Environmental Management
October 1986 - June 1989
University of Bristol
Field of study
  • Biology

Publications

Publications (71)
Article
Full-text available
Genetic diversity among and within populations of all species is necessary for people and nature to survive and thrive in a changing world. Over the past three years, commitments for conserving genetic diversity have become more ambitious and specific under the Convention on Biological Diversity’s (CBD) draft post-2020 global biodiversity framework...
Chapter
Full-text available
There are severe problems with the decision-making processes currently widely used, leading to ineffective use of evidence, faulty decisions, wasting of resources and the erosion of public and political support. In this book an international team of experts provide solutions. The transformation suggested includes rethinking how evidence is assessed...
Chapter
Full-text available
There are severe problems with the decision-making processes currently widely used, leading to ineffective use of evidence, faulty decisions, wasting of resources and the erosion of public and political support. In this book an international team of experts provide solutions. The transformation suggested includes rethinking how evidence is assessed...
Preprint
Full-text available
Genetic diversity among and within populations of all species is necessary for people and the planet to survive in a changing world. Over the past three years, the conservation of genetic diversity has received increased ambition and specificity in commitments under the draft Convention on Biological Diversity's (CBD) post 2020 Global Biodiversity...
Article
Full-text available
Understanding the relationship between biodiversity conservation and ecosystem services concepts is essential for evidence-based policy development. We used text mining augmented by topic modelling to analyse abstracts of 15 310 peer-reviewed papers (from 2000 to 2020). We identified nine major topics; “Research & Policy”, “Urban and Spatial Planni...
Book
One of the main challenges for conservation today is monitoring and understanding changes in biodiversity. Genetic diversity provides the foundation for biodiversity and is necessary for long-term survival, adaptation, and resilience not only for individuals, but also for populations, species, and entire ecosystems. Monitoring genetic diversity acr...
Article
The attribution of biodiversity trends to the action of individual drivers is a first step in developing strategies to conserve, enhance and restore that diversity. One approach to that identification is to link information on species trends with information on ecological preferences that relate to the drivers. Long-term and short-term occupancy tr...
Article
Full-text available
Many types of guidance documents inform conservation by providing practical recommendations for the management of species and habitats. To ensure effective decisions are made, such guidance should be based upon relevant and up-to-date evidence. We reviewed conservation guidance for mitigation and management of species and habitats in the United Kin...
Article
Full-text available
Genetic diversity is one of the three main levels of biodiversity recognised in the Convention on Biological Diversity (CBD). Fundamental for species adaptation to environmental change, genetic diversity is nonetheless under‐reported within global and national indicators. When it is reported, the focus is often narrow and confined to domesticated o...
Article
Full-text available
Evidence-based approaches are key for underpinning effective conservation practice, but major gaps in the evidence of the effectiveness of interventions limit their use. Conservation practitioners could make major contributions to filling these gaps but often lack the time, funding, or capacity to do so properly. Many funders target the delivery of...
Article
Full-text available
Biodiversity underlies ecosystem resilience, ecosystem function, sustainable economies, and human well‐being. Understanding how biodiversity sustains ecosystems under anthropogenic stressors and global environmental change will require new ways of deriving and applying biodiversity data. A major challenge is that biodiversity data and knowledge are...
Article
Full-text available
The Coalition for Conservation Genetics (CCG) brings together four eminent organizations with the shared goal of improving the integration of genetic information into conservation policy and practice. We provide a historical context of conservation genetics as a field and reflect on current barriers to conserving genetic diversity, highlighting the...
Article
Full-text available
The putatively positive association between host genetic diversity and the ability to defend against pathogens has long attracted the attention of evolutionary biologists. Chytridiomycosis, a disease caused by the chytrid fungus Batrachochytrium dendrobatidis (Bd), has emerged in recent decades as a cause of dramatic declines and extinctions across...
Article
Full-text available
Making the reasoning and evidence behind conservation management decisions clear and transparent is a key challenge for the conservation community. Similarly, combining evidence from diverse sources (e.g., scientific and local knowledge) into decision‐making is also difficult. Our group of conservation researchers and practitioners has co‐produced...
Article
Conserving genetic diversity in wild species is vital for preserving adaptations to local environmental conditions. We conducted a habitat creation project for a flagship European Protected Species of amphibian (northern great crested newt Triturus cristatus) at its northwestern range edge in the Scottish Highlands, combining existing knowledge abo...
Preprint
Full-text available
Making the reasoning and evidence behind conservation decisions clear and transparent is a key challenge for the conservation community. Similarly, combining evidence from diverse sources (e.g., scientific vs non-scientific information) into decision-making is also difficult. Our group of conservation researchers and practitioners has co-produced a...
Article
Full-text available
Processes of island colonisation have long been of interest to biologists. Colonisation events themselves are rarely observed, but the processes involved may be inferred using genetic approaches. We investigated possible means of island colonisation by common toads (Bufo bufo) in western Scotland (the Isle of Skye and five neighbouring small island...
Article
Full-text available
A correction to this paper has been published: https://doi.org/10.1007/s10592-021-01376-9
Article
Full-text available
International agreements such as the Convention on Biological Diversity (CBD) have committed to conserve, and sustainably and equitably use, biodiversity. The CBD is a vital instrument for global conservation because it guides 195 countries and the European Union in setting priorities and allocating resources, and requires regular reporting on prog...
Article
Full-text available
Global conservation policy and action have largely neglected protecting and monitoring genetic diversity—one of the three main pillars of biodiversity. Genetic diversity (diversity within species) underlies species’ adaptation and survival, ecosystem resilience, and societal innovation. The low priority given to genetic diversity has largely been d...
Article
Full-text available
The health of the world’s oceans are intrinsically linked to the biodiversity of the ecosystems they sustain. The importance of protecting and maintaining ocean biodiversity has been affirmed through the setting of the UN Sustainable Development Goal 14 to conserve and sustainably use the ocean for society’s continuing needs. The decade beginning 2...
Article
Full-text available
1. Genetic diversity is important for species persistence and Gene Conservation Units (GCUs) have been implemented for forest trees to protect genetic diversity and evolutionary processes in situ. The Convention on Biological Diversity stipulates the protection of genetic diversity as an Aichi target, and so we explore the potential for GCUs to be...
Technical Report
Full-text available
This report presents an assessment of Scotland's progress towards meeting the 20 Global Aichi Targets. The Convention on Biological Diversity (CBD) sett 20 global targets, known as Aichi Targets, to be met by 2020. The Scottish Biodiversity Strategy: 2020 Challenge for Scotland's Biodiversity sets the strategic priorities for Scotland, and the Rout...
Article
Full-text available
1. Effective wildlife restoration is a critical requirement of many conservation actions. The outcome of conservation interventions can be optimized through knowledge of species' habitat requirements, but few studies consider the impact of using explicit evidence from dedicated local research to inform the design phase of habitat management. Furthe...
Article
In order to advance understanding of the current infection status related to the presence of Batrachochytrium spp. in different populations, we tested for the presence/absence (qualitative analysis) of Bd and Bsal in 13 monitored populations and measured the Bd infection loads (quantitative analysis) of 16 populations of the Pyrenean Brook Newt in...
Research
With amphibians continuing to decline at an alarming rate, ex situ management of endangered and vulnerable species is of the upmost priority. The formation of biobanks or genome resource banks (GRPB) not only provide long-term storage of genetic diversity but also an economically viable management tool for zoos, aquariums, museums and other institu...
Article
Full-text available
Amphibians of high mountain lakes face many threats related to global change, including novel pathogens, development, climate change and overexploitation. However, the foremost threat is the presence of non-native fish. One of the objectives of the LIFE+ LIMNOPIRINEUS project (2014-2019) was the recovery of protected amphibian communities (includin...
Preprint
Full-text available
Genetic diversity is critically important for all species-domesticated and wild- to adapt to environmental change, and for ecosystem resilience to extreme events. International agreements such as the Convention on Biological Diversity (CBD) have committed to conserve and sustainably and equitably use all levels of biodiversity-genes, species and ec...
Article
Full-text available
We believe the 20 species extinction metric is a retrograde proposal, which does not adequately consider the lessons learnt from the 2020 Aichi Biodiversity Targets. Whilst having a single simple overarching target is appealing, we believe a positively-framed target will garner support, rather than one that aims to, at best, limit negative impacts....
Article
This study investigated the extent to which intensive forest management practices influence a widespread bird of conservation concern, the Woodlark Lullula arborea. We compared trends of the studied population in Notec Forest, Poland during 2010-2014 against country-wide monitoring data, and populations of the forest interior versus forest edge dom...
Article
Full-text available
The 196 parties to the Convention on Biological Diversity (CBD) will soon agree to a post-2020 global framework for conserving the three elements of biodiversity (genetic, species, and ecosystem diversity) while ensuring sustainable development and benefit sharing. As the most significant global conservation policy mechanism, the new CBD framework...
Article
Full-text available
Historical factors (colonization scenarios, demographic oscillations) and contemporary processes (population connectivity, current population size) largely contribute to shaping species’ present‐day genetic diversity and structure. In this study, we use a combination of mitochondrial and nuclear DNA markers to understand the role of Quaternary clim...
Article
Full-text available
Increased demand for renewable energy has led to growth in the use of land for electricity generation and associated infrastructure. Land-based wind farms are amongst the commonest generators of renewable energy. To date, most research on the effects of wind farms on wildlife have focussed on birds and bats, with very little work on terrestrial tax...
Article
Published in Wood Wise, the Woodland Trust's periodical, and available at https://www.woodlandtrust.org.uk/media/48554/woodwise-spring-2020.pdf. Whilst woodland creation for biodiversity conservation has generally used native species appropriate to the site, it has recently been proposed that increasing diversity by adding non-native tree species...
Technical Report
Full-text available
As there is no agreed national list of species of socio-economic and/or cultural value for Scotland, a set of criteria for selecting species has been developed. These include: • Species prioritised for conservation value • Species identified as being culturally important • Species providing important ecosystem services • Game species • Species coll...
Technical Report
Full-text available
Aichi Target 13 (T13) focuses on the conservation of genetic diversity. • Major challenges in implementing T13 are that the type of genetic diversity to conserve is not clearly defined, and that key issues in genetic conservation vary across different sectors (e.g., forestry vs agriculture vs other species of socio-economic importance). • In Scotla...
Article
Species diversification can increase resilience of British forests if diversifying species are adapted to site, genetically variable, and do not harm existing forests. Immediate increase in resilience is best achieved using native or well-established exotic species, rather than ‘alternative’ species. ‘Alternative’ species currently lack adequate in...
Conference Paper
Full-text available
Urbanisation has been identified as a major threat to biodiversity worldwide. As well as consuming land, urban expansion perturbs natural processes such as flooding and nutrient cycling, and fragments habitats. Flooding is of particular concern in many countries as extreme weather events appear to be increasing in frequency. In compliance with the...
Article
Full-text available
Tree pathogens are a major threat to forest ecosystems. Conservation management strategies can exploit natural mechanisms of resistance, such as tree genotype and host‐associated microbial communities. However, fungal and bacterial communities are rarely looked at in the same framework, particularly in conjunction with host genotype. Here, we explo...
Conference Paper
Full-text available
Urbanisation is a major threat to many taxa including amphibians. Expanding cities take away land from biodiversity, perturb ‘natural processes’ such as flooding and nutrient cycling, and fragment habitats. In addition, urban citizens are less likely to experience nature and the health and well-being effects it provides. In compliance with the EU W...
Article
Understanding the contributions from the environment to society is seen as increasingly important globally. In Scotland this is currently a high priority, as policymakers begin to shift attention away from traditional wellbeing indicators such as GDP. Although alternative natural capital accounting techniques exist, and are useful for creating comm...
Conference Paper
Full-text available
Abstract The LIFE+ LimnoPirineus project (2014-2019) includes the recovery of amphibian populations in eight lakes of Aigü estortes i Estany de Sant Maurici National Park and Alt Pirineu Natural Park, by eradicating or controlling non-native fish. During the summers from 2014-2018 practically all of the fish present in the lakes were removed. We fo...
Article
Full-text available
Environmental policy decisions should be based on robust indicators of changes in the environment. In Scotland these have been formalised as Ecosystem Health Indicators. Indicators work best where there is a direct link between what is measured and environmental change; changes in indices of species diversity or abundance provide alerts to environm...
Article
Full-text available
While urbanisation is a major threat to global biodiversity, it also brings opportunities for some species. Sustainable Drainage Systems (SuDS) have been installed in all Scottish cities to reduce flood and pollution risk and they can also offer new habitats for wildlife. We studied SuDS in Inverness and the Scottish Central Belt to assess their va...
Article
Citizen science approaches are valuable tools for biodiversity management and conservation, particularly in urban areas. The OPAL Water Survey is a citizen science approach to assessing water quality by recording the presence/absence of 13 easily identifiable freshwater invertebrate groups. The survey generates a score (the Pond Health Score) that...
Article
Both plantation forests and native woodlands are currently facing challenges in the form of rapid climatic change and unprecedented increases in damage by exotic pests and diseases. To combat these problems it has been proposed that a range of novel exotic tree species (non-native species that have not yet undergone thorough operational testing or...
Article
Full-text available
Sustainable Drainage Systems (SuDS) are engineering solutions for managing storm water, and they can also provide blue spaces that equitably benefit the health and wellbeing of urban dwellers. The main objectives of this study were to test whether affluent neighbourhoods have SuDS with better ecological quality in one of Europe’s fastest developing...
Technical Report
Full-text available
This interim report presents an assessment of Scotland’s current progress towards meeting the Global Aichi Targets1. The Convention on Biological Diversity (CBD) set 20 global targets, known as Aichi Targets, to be met by 2020. The Scottish Biodiversity Strategy: 2020 Challenge for Scotland’s Biodiversity2 sets the strategic priorities for Scotlan...
Conference Paper
Full-text available
Conservation genetics as a scientific discipline has sometimes been criticised for not offering real-world solutions to conservation problems. We present a study which began as a citizen science project, became a multidisciplinary approach using climate history, habitat specialists, geneticists and conservation agency staff and has ended in a habit...
Poster
Full-text available
Sustainable Drainage Systems (SuDS) manage storm-water, reducing flood risk and diffuse pollution, through processes mimicking nature (Woods-Ballard et al. 2015). We postulated that SuDS might bring three benefits to biodiversity (O’Brien 2015): as breeding sites; by connecting otherwise isolated populations to form metapopulations within a habitat...
Article
Habitat Suitability Indices (HSI) are widely used in conservation and in pre-development surveying. We tested a commonly-used HSI to assess its effectiveness at predicting the presence of a European protected species, the great crested newt Triturus cristatus, at the edge of its range. This HSI is used to understand species’ conservation needs, and...
Article
Full-text available
Edge populations are of conservation importance because of their roles as reservoirs of evolutionary potential and in understanding a given species’ ecological needs. Mainly due to loss of aquatic breeding sites, the great crested newt Triturus cristatus is amongst the fastest declining amphibian species in Europe. Focusing on the north-westerly li...
Article
Full-text available
Microbial ecology provides insights into the ecological and evolutionary dynamics of microbial communities underpinning every ecosystem on Earth. Microbial communities can now be investigated in unprecedented detail, although there is still a wealth of open questions to be tackled. Here we identify 50 research questions of fundamental importance to...
Chapter
Full-text available
This chapter covers the identification, current distribution, habitat, history in Scotland, annual cycle, diet, population, threats and gaps in current knowledge of the great crested newt Triturus cristatus. The book is designed to be an interesting and informative guide to the amphibians and reptiles that are found wild in Scotland. This species a...
Chapter
Full-text available
This chapter covers the identification, current distribution, habitat, history in Scotland, annual cycle, diet, population, threats and gaps in current knowledge of the palmate newt Lissotriton helveticus. The book is designed to be an interesting and informative guide to the amphibians and reptiles that are found wild in Scotland. This species acc...
Chapter
Full-text available
This chapter highlights three large, landscape-scale habitat management projects for amphibians and reptiles that have taken place in Scotland. These provide examples of the kind of work that can be done if a significant amount of funding is secured or sympathetic landowners can be found who are willing to allow work on a voluntary basis. Open ac...
Chapter
Full-text available
The great crested newt is a threatened species across Europe. Though the UK is a stronghold, the species is not in favourable condition even here. Scotland is at the edge of its range with a limited, patchy distribution. A scoping report in 2006/2007 gathered together a compendium of possible habitat restoration and creation projects. The aim was t...
Conference Paper
Full-text available
Abstract booklet coveing all talks and posters at the 14th October 2015 conference at the Royal Society of Edinburgh (RSE) for PhD and Masters students undertaking ecological, environmental and conservation work.
Article
Full-text available
Determining whether isolated populations of a species are native or introduced is important for conservation, as non-native occurrences are likely to be of lower priority for conservation organisations with limited resources. The great crested newt Triturus cristatus is an important wetland flagship species in the UK, and recent evidence suggested...
Article
Full-text available
The most widespread British amphibian Rana temporaria, is found in every mainland county in Britain. Beebee & Griffiths describe it as "breeding in mountain bogs and tarns up to 1,000 metres above sea level," though it can be found up to 3,000 m above sea level in the Pyrenees. On 22nd July 2014 numbers of R. temporaria tadpoles and one adult were...
Conference Paper
Full-text available
Amphibians are suffering global declines in numbers and increased urbanisation has been cited as one of the contributing causes. Whilst urban garden ponds have been shown to be important breeding sites for some species, they tend to be smaller than ponds in the wider countryside and to be at risk of filling in by owners. Sustainable Drainage System...
Article
Determining whether isolated populations of a species are native or introduced is important for conservation, as non-native occurrences are likely to be of lower priority for conservation organisations with limited resources. The great crested newt Triturus cristatus is an important wetland flagship species in the UK, and recent evidence suggested...
Article
Full-text available
Amphibians are suffering global declines in populations, and urban habitats are becoming increasingly important for the survival of several species. Sustainable Drainage Systems (SuDS) in Inverness (Highlands, UK) were studied over 3 years to assess their role in supporting breeding amphibians. Amphibians were found in seven of the 12 SuDS ponds su...
Article
Full-text available
A quarry pond in Highland, UK, was treated with PyBlast (a biocide derived from natural pyrethrin) to eradicate a population of invasive non‐native signal crayfish Pacifasticus leniusculus. Although it was anticipated that pyrethrin application would lead to the death of all poikilothermic animals present in the quarry pond, its use was sanctioned...
Article
Full-text available
The great crested newt Triturus cristatus is widespread in Britain but rare or absent over much of Scotland. The species is known from a small number of sites in the Scottish Highlands, but these are separated from the rest of the British population by over 80 km of unfavourable habitat, which has given rise to doubts about the origin of great cres...

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Projects (5)
Project
To help provide the data, tools, and knowledge needed to help safeguard genetic diversity of wild, managed and cultivated species for human well-being and ecosystem resilience https://geobon.org/ebvs/working-groups/genetic-composition/
Project
Be that as it may, more than 41% of amphibian species are thought of as ‘endangered’, including 54.7% of the Urodela group. In this case, the well-known family Salamandridae contained not less than 27 threatened species as of 2015. 56 species are still not evaluated by the IUCN and are classed data deficient (DD) in 2018. North and Central America and Asia are most severely affected by the continued destruction of habitats and the spread of chytrid (Bd). In Asia, the human consumption of many species has become also a major issue (Hernandez 2015a, 2016a,b,c). Thus, the main factors are grouped here: 1) Habitat destruction and alteration [in France, the area covered by roads is greater than that of protected areas] with Asia, Central and South America being most severely affected; 2) Climate change; 3) Pollution 4) The increasing emergence of Batrachochytrium dendrobatidis since the 1980s [and Batrachochytrium salamandrivorans since 2013]; 5) The overexploitation of natural resources (trade in endangered species, use in traditional medicine (Andrias, Tylototriton in China), and as food (Asia, Mexico); 5) The introduction of potentially invasive alien species (red-eared slider, red swamp crayfish, bullfrog a.o. in Europe) that thrive to the detriment of native species. As a result, species conservation is complex and depends on many interdependent players: countries and states, institutions, NGOs, etc., which need to agree on who will do what, where and when. Most of these projects take time, while the crisis will continue to severely worsen with every passing year (Gascon et al. 2007). Some species have already become extinct and more are likely to follow suit. Effective conservation is key to pulling back at least some species from the brink of extinction. Nature and species conservation have in fact turned into a new scientific discipline that primarily makes use of two techniques: ex situ (off-site) and in situ (on-site) initiatives. The crises at its base increased in number and accelerated due to changes in our society. While biodiversity could largely survive at times of traditional land management practices, the industrial revolution that began in the 19th century has made humans more and more unaware of the value of their natural heritage and mass destruction an everyday occurrence by now. First and foremost in this are the excessive and poorly managed exploitation of resources (water, soil and forests) to the detriment of natural environments the world over. While only two urodeles are officially extinct, Hypselotriton wolterstorffi and Plethodon ainsworthi, the status of many other species is unknown or uncertain in South and Central America and South Asia, frightening examples of which are the Central and South American species of Pseudoeurycea, Thorius, Bolitoglossa and related genera, and is demonstrated by species that have not been found in more than thirty years such as Isthmura naucampatepetl, Pseudoeurycea ahuitzotl, P. mixcoalt, P. aquatica, B. digitigrada, and many others more. As far as Asia is concerned, many new species have been discovered in recent years, but we are only just beginning to understand the incredible diversity within groups such as Tylototriton, Pachytriton and Paramesotriton. Like elsewhere in the world, their population status is largely unknown and deserving of a full assessment (Hernandez 2015a, 2016a).
Project
Variation in a species’ habitat needs across its range remains poorly understood. We are studying the realised habitats of the newt Lissotriton helveticus. Although abundant over its core range, and in places presumably one of the dominant vertebrates in terms of both number and biomass, this species is confined to the western fringes of Europe. By examining breeding sites and surrounding habitat across the range, we hope to bet