David Mouillot

Université de Montpellier | UM1 · Unité mixte de recherche Ecologie des Systèmes Marins Côtiers (ECOSYM)

Marine protected areas (MPAs) are widely implemented tools for long‐term ocean conservation and resource management. Assessments of MPA performance have largely focused on specific ecosystems individually and have rarely evaluated performance across multiple ecosystems either in an individual MPA or across an MPA network. We evaluated the conservat...

Coastal ecosystems are affected by numerous direct anthropogenic pressures (urbanization, fisheries, etc.) and global changes (climate change, biological invasions, etc.). Long-term monitoring of their biodiversity is crucial for (1) diagnosing disturbances as early as possible, (2) evaluating conservation (Marine Protected Areas) and restoration a...

The exceptional diversity of shallow‐water marine fishes contributes to the nutrition of millions of people worldwide through coastal wild‐capture fisheries, with different species having diverse nutritional profiles. Fishes in ecosystems are reservoirs of micronutrients with benefits to human health. Yet, the amount of micronutrients contained in...

Aim The Mediterranean Sea is one of the most anthropized seas in the world but also a marine biodiversity hotspot with many fish species under threat. The main goal of the study is to test whether on the heavily fished and anthropized Mediterranean coast, the less impacted Corsica and Balearic Islands, can be considered as refugia for threatened an...

Protected areas (PAs) have expanded rapidly in recent decades to help mitigate the ongoing biodiversity crisis but are under increasing human pressures that jeopardize their conservation effectiveness. Tourism in PAs may galvanize efforts towards biodiversity conservation, but it can also be a major source of threats, leading to multiple adverse so...

Understanding how ecological assemblages vary in space and time is essential for advancing our knowledge of biodiversity dynamics and ecosystem functioning. Metabarcoding of environmental DNA (eDNA) is an efficient method for documenting biodiversity changes in both marine and terrestrial ecosystems. However, current methods fail to detect and disp...

Aim Ecological state shifts that alter the structure and function of entire ecosystems are a concerning consequence of human impact. Yet, when, where and why discrete ecological states emerge remains difficult to predict and monitor, especially in high‐diversity systems. We sought to quantify state shifts and their drivers through space and time in...

The global network of protected areas has rapidly expanded in the past decade and is expected to cover at least 30% of land and sea by 2030 to halt biodiversity erosion. Yet, the distribution of protected areas is highly heterogeneous on Earth and the social-environmental preconditions enabling or hindering protected area establishment remain poorl...

Combating climate change and achieving the UN Sustainable Development Goals (SDGs) are two important challenges facing humanity. Natural climate solutions (NCSs) can contribute to the achievement of these two commitments but can also generate conflicting trade‐offs. Here, we reviewed the literature and drew on expert knowledge to assess the co‐bene...

The amount of ocean protected from fishing and other human impacts has often been used as a metric of conservation progress. However, protection efforts have highly variable outcomes that depend on local conditions, which makes it difficult to quantify what coral reef protection efforts to date have actually achieved at a global scale. Here, we dev...

Marine Protected Areas (MPAs) are a cornerstone of marine conservation efforts, with the potential to protect biodiversity and provide socioeconomic benefits. We quantified the effect of MPAs on fishing outcomes, economic activities, and material living standards in 24 coastal villages of Tanzania over two decades. We accessed original data from a...

Anthropogenic activities are eroding biodiversity and its contributions to nature and people worldwide. Yet, the dual imperative to protect nature and sustain human well-being raises potential trade-offs that remain to be quantified. Using standardized fish surveys across 1,237 tropical reefs worldwide, we converted the presence and abundance data...

High definition can be downloaded here: https://www.vigilife.org/wp-content/uploads/guide-milieu-marin-hd.pdf Low definition can be downloaded here: https://www.vigilife.org/wp-content/uploads/guide-milieu-marin-bd.pdf This practical guide has been designed to help all those involved in marine biodiversity to implement eDNA analysis methods, from d...

Accelerating rate of human impact and environmental change severely affects marine biodiversity and increases the urgency to implement the Convention on Biological Diversity (CBD) 30×30 plan for conserving 30% of sea areas by 2030. However, area‐based conservation targets are complex to identify in a 3‐dimensional (3D) ocean where deep‐sea features...

While extinction risk categorization is fundamental for building robust conservation planning for marine fishes, empirical data on occurrence and vulnerability to disturbances are still lacking for most marine teleost fish species, preventing the assessment of their International Union for the Conservation of Nature (IUCN) status. In this article,...

The dugong population of New Caledonia was recently assessed as endangered by the IUCN due to its low genetic diversity, its limited number of mature individuals and the continuing threats from poaching, collisions, incidental capture and seagrass degradation. No‐take marine protected areas (MPAs) implemented in critical dugong habitats may efficie...

Evidence of large‐scale biodiversity degradation in marine ecosystems has been reported worldwide, yet most research has focused on few species of interest or on limited spatiotemporal scales. Here we assessed the spatial and temporal changes in the taxonomic and functional composition of fish communities in European seas over the last 25 years (19...

Fish fecundity scales hyperallometrically with body mass, meaning larger females produce disproportionately more eggs than smaller ones. We explore this relationship beyond the species-level to estimate the “reproductive potential” of 1633 coral reef sites distributed globally. We find that, at the site-level, reproductive potential scales hyperall...

Human interest in biodiversity is essential for effective conservation action but remains poorly quantified at large scales. Here, we investigated human interest for 2408 marine reef fishes using data obtained from online public databases and social media, summarized in two synthetic dimensions, research effort and public attention. Both dimensions...

Spatial and temporal patterns of future coral bleaching are uncertain, hampering global conservation efforts to protect coral reefs against climate change. Our analysis of daily projections of ocean warming establishes the severity, annual duration, and onset of severe bleaching risk for global coral reefs this century, pinpointing vital climatic r...

Rhodolith beds, recognized as biodiversity hotspots with high ecological and conservation importance, face local anthropic pressures, including trawl fishing. However, monitoring the diversity associated with this sensitive biogenic habitat in the deep waters of the Mediterranean Sea is challenging. Traditional monitoring methods, such as experimen...

Measuring socioeconomic indices at the scale of regions or countries is required in various contexts, in particular to inform public policies. The use of Deep Learning (DL) and Earth Observation (EO) data is becoming increasingly common to estimate specific variables like societal wealth. This paper presents an end-to-end framework ‘DeepWealth’ tha...

Offshore wind farms (OWF), due to their location, represent new opportunities for observing the maritime environment over the coming years. They particularly attract the attention of scientists whether, as part of a monitoring program applied to qualify the impact of offshore wind farms on the environment and/or, for monitoring marine ecosystems in...

Islands have been used as model systems to study ecological and evolutionary processes, and they provide an ideal set‐up for validating new biodiversity monitoring methods. The application of environmental DNA metabarcoding for monitoring marine biodiversity requires an understanding of the spatial scale of the eDNA signal, which is best tested in...

Coastal areas host a major part of marine biodiversity but are seriously threatened by ever-increasing human pressures. Transforming natural coastlines into urban seascapes through habitat artificialization may result in loss of biodiversity and key ecosystem functions. Yet, the extent to which seaports differ from nearby natural habitats and marin...

Scientific working groups bring together experts from different disciplines and perspectives to tackle the "wicked problems" facing natural systems and society. Yet participants can feel overwhelmed or inadequate in groups within academic environments, which tends to be most acute at early career stages and in people from systematically marginalize...

Marine protected areas (MPAs) are the most widely applied tool for marine biodiversity conservation, yet many gaps remain in our understanding of their species‐specific effects, partly because the socio‐environmental context and spatial autocorrelation may blur and bias perceived conservation outcomes. Based on a large data set of nearly 3000 marin...

Animal body-size variation influences multiple processes in marine ecosystems, but habitat heterogeneity has prevented a comprehensive assessment of size across pelagic (midwater) and benthic (seabed) systems along anthropic gradients. In this work, we derive fish size indicators from 17,411 stereo baited-video deployments to test for differences b...

Coastal areas offer a diversity of habitats providing refugia and nursery for fish, promoting their biodiversity and associated contributions to people. Yet, natural coastlines are replaced by artificial infrastructures such as seaports and the influence of this artificialization on fish biodiversity remains poorly known. Here, we assessed fish bio...

Coastal ecosystems of the Mediterranean Sea are among the richest in non‐indigenous species, mostly due to the establishment of species coming from the Red Sea through the Suez Canal. Two herbivorous rabbitfishes, Siganus rivulatus and Siganus luridus , are already invasive in the south‐eastern part of the Mediterranean Sea where they cause ecologi...

Detecting and tracking ships remotely is now required in a wide range of contexts, from military security to illegal immigration control, but also management of fisheries and marine protected areas. Among the available methods, radar remote sensing is increasingly used due to its advantages of being rarely affected by cloud cover and allowing image...

Elasmobranchs (sharks, rays and skates) are among the most threatened marine vertebrates, yet their global functional diversity remains largely unknown. Here, we use a trait dataset of >1000 species to assess elasmobranch functional diversity and compare it against other previously studied biodiversity facets (taxonomic and phylogenetic), to identi...

Environmental DNA (eDNA) metabarcoding provides an efficient approach for documenting biodiversity patterns in marine and terrestrial ecosystems. The complexity of these data prevents current methods from extracting and analyzing all the relevant ecological information they contain, and new methods may provide better dimensionality reduction and cl...

Sustainably managing fisheries requires regular and reliable evaluation of stock status. However, most multispecies reef fisheries around the globe tend to lack research and monitoring capacity, preventing the estimation of sustainable reference points against which stocks can be assessed. Here, combining fish biomass data for >2000 coral reefs, we...

Calls for using marine protected areas (MPAs) to achieve goals for nature and people are increasing globally. While the conservation and fisheries impacts of MPAs have been comparatively well‐studied, impacts on other dimensions of human use have received less attention. Understanding how humans engage with MPAs and identifying traits of MPAs that...

The silky shark (Carcharhinus falciformis) has experienced a significant population decline associated with intense targeted and incidental fishing pressure. Large marine protected areas (MPAs) are increasingly advocated for the conservation of oceanic species like silky sharks, recognising that the benefits of MPAs to such species depend on a comp...

We ran numerical experiments for the reconstruction of sea surface turbidity dynamics using a daily 1km resolution multisensor (MODIS, VIIRS, OLCI) L3 satellite product from 2019 to 2021, off the French coast, in the western Mediterranean Sea. Here, we explored neural interpolation schemes as an approach to conduct image gap filling. Among state-of...

Marine protected areas (MPAs) have gained attention as a conservation tool for enhancing ecosystem resilience to climate change. However, empirical evidence explicitly linking MPAs to enhanced ecological resilience is limited and mixed. To better understand whether MPAs can buffer climate impacts, we tested the resistance and recovery of marine com...

To limit climate warming to 2°C above preindustrial levels, most economic sectors will need a rapid transformation toward a net zero emission of CO2 . Tuna fisheries is a key food production sector that burns fossil fuel to operate but also reduces the deadfall of large-bodied fish so the capacity of this natural carbon pump to deep sea. Yet, the c...

Recent work has shown that evaluating functional trait distinctiveness, the average trait distance of a species to other species in a community offers promising insights into biodiversity dynamics and ecosystem functioning. However, the ecological mechanisms underlying the emergence and persistence of functionally distinct species are poorly unders...

In this study, we tested cost effective monitoring tools using static video, environmental DNA and hydroacoustics in a rhodolith bed in the Menorca Channel (Western Mediterranean) along a conservation gradient including a well-preserved area. We compared the effectiveness of the different techniques to assess their capacity to inform on the ecologi...

The three sympatric angel shark species occurring in the Mediterranean – Squatina squatina (the angelshark), Squatina aculeata (the sawback angelshark), and Squatina oculata (the smoothback angelshark) – are all classed as Critically Endangered on the International Union for Conservation of Nature (IUCN) Red List. There is a clear need to better qu...

Aim Coastal fishes have a fundamental role in marine ecosystem functioning and contributions to people, but face increasing threats due to climate change, habitat degradation and overexploitation. The extent to which human pressures are impacting coastal fish biodiversity in comparison with geographic and environmental factors at large spatial scal...

1. Metabarcoding of environmental DNA (eDNA) has recently improved our understanding of biodiversity patterns in marine and terrestrial ecosystems. However, the complexity of these data prevents current methods to extract and analyze all the relevant ecological information they contain. Therefore, ecological modeling could greatly benefit from new...

Environmental DNA (eDNA) metabarcoding is a reliable method to assess taxonomic diversity, but the incompleteness of genetic reference databases prevents the assignation of many sequences to a given species. Functional diversity (FD) is a key biodiversity facet to monitor, but it requires the identification of all species within communities to acco...

Anthropogenic pressures are restructuring coral reefs globally. Sound predictions of the expected changes in key reef functions require adequate knowledge of their drivers. Here we investigate the determinants of a poorly-studied yet relevant biogeochemical function sustained by marine bony fishes: the excretion of intestinal carbonates. Compiling...

Human exploitation has profoundly depleted animal populations in the ocean, leading to declines in ecosystem productivity, resilience, and contributions to people 1,2 . However, it remains unclear how size structure of fish populations varies across marine habitat and levels of human exploitation while simultaneously underpinning food web architect...

Overfishing and habitat degradation are major threats to marine megafauna worldwide. Marine protected areas (MPAs) are effective spatial conservation tools for reducing anthropogenic pressures on threatened species but their benefits for megafauna are still debated. While the effects of MPAs on species abundances are widely reported, few studies ha...

As part of the Decadal Management Review, and with support from California's Ocean Protection Council, the National Center for Ecological Analysis and Synthesis (NCEAS) initiated a working group to develop an understanding of how the State of California's Network of marine protected areas (MPAs) has performed over the past decade, and the lessons t...

The bathymetric and geographical distribution of marine species represent a key information in biodiversity conservation. Yet, deep-sea ecosystems are among the least explored on Earth and are increasingly impacted by human activities. Environmental DNA (eDNA) metabarcoding has emerged as a promising method to study fish biodiversity but applicatio...

Marine reserves are being established worldwide to conserve and manage marine resources, and are also often assumed to conserve the evolutionary potential of marine populations. However, comparisons of genomic patterns inside and outside marine reserves in multiple species are scarce. Here, we aim to fill this gap by 1) comparing genomic variation...

Cooperation between countries in managing and protecting shared marine resources is beneficial both ecologically and economically, but how best to establish the cooperation needed at a global scale is largely unknown. Here, we used hydrodynamic modelling to identify ecologically connected networks of marine reserves (MRs) and evaluated these networ...

Tropical reefs and the fish relying on them are under increasing pressure. Shallow-reef fish provide important ecological information in addition to sustaining fisheries, tourism and more. Although empirical metrics of fish biomass are widely used in fisheries management, metrics of biomass production—how much new biomass is produced over time—are...

Despite the importance of marine megafauna on ecosystem functioning, their contribution to the oceanic carbon cycle is still poorly known. Here, we explored the role of baleen whales in the biological carbon pump across the southern hemisphere based on the historical and forecasted abundance of five baleen whale species. We modelled whale-mediated...

Large land and ocean mammals, like elephants and whales, play essential roles in the environment but are severely threatened by human activities. Images taken from planes can be used to spot these animals from the air. However, these species are difficult to observe because they are rare and move a lot, so unfortunately there are not many images co...

Although how rare species persist in communities is a major ecological question, the critical phenotypic dimension of rarity is broadly overlooked. Recent work has shown that evaluating functional distinctiveness, the average trait distance of a species to other species in a community, offers essential insights into biodiversity dynamics, ecosystem...

The sustainability of coral reef fisheries is jeopardized by complex and interacting socio-ecological stressors that undermine their contribution to food and nutrition security. Climate change has emerged as one of the key stressors threatening coral reefs and their fish-associated services. How fish nutrient concentrations respond to warming ocean...