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Introduction
Publications
Publications (209)
Virophages are small double stranded DNA (dsDNA) viruses that can only replicate in a host by co-infecting with another virus. Marine algae are commonly associated with virophage-like elements such as Polinton-like viruses (PLVs) that remain largely uncharacterized. Here we isolated a PLV that co-infects the alga Phaeocystis globosa with the Phaeoc...
Spinareoviridae is a large family of icosahedral viruses that are usually regarded as non-enveloped with segmented (9–12 linear segments) dsRNA genomes of 23–29 kbp. Spinareovirids have a broad host range, infecting animals, fungi and plants. Some have important pathogenic potential for humans (e.g. Colorado tick fever virus), livestock (e.g. avian...
Southern Ocean phytoplankton are especially subjected to pronounced seasonal and interannual changes in light availability. Although previous studies have examined the role of light in these environments, very few combined pigment-based taxonomy with flow cytometry to better discriminate the light response of various phytoplankton groups. In partic...
Sedoreoviridae is a large family of icosahedral viruses that are usually regarded as non-enveloped with segmented (10–12 linear segments) dsRNA genomes of 18–26 kbp. Sedoreovirids have a broad host range, infecting mammals, birds, crustaceans, arthropods, algae and plants. Some of them have important pathogenic potential for humans (e.g. rotavirus...
Whether phytoplankton mortality is caused by grazing or viral lysis has important implications for phytoplankton dynamics and biogeochemical cycling. The ecological relevance of viral lysis for Antarctic phytoplankton is still under-studied. The Amundsen Sea is highly productive in spring and summer, especially in the Amundsen Sea Polynya (ASP), an...
Phaeocystis is a globally widespread marine phytoplankton genus, best known for its colony-forming species that can form large blooms and odorous foam during bloom decline. In the North Sea, Phaeocystis globosa typically becomes abundant towards the end of the spring bloom, when nutrients are depleted and the share of mixotrophic protists increases...
Coastal areas around Antarctica such as the Amundsen Sea are important sources of trace metals and biological hotspots, but are also experiencing the effects of climate change, including the rapid thinning of ice sheets. In the central Amundsen Sea Polynya (ASP), both bio-essential dissolved Fe (DFe) and dissolved Mn (DMn) were found to be depleted...
Virophages are small dsDNA viruses dependent on a nucleocytoplasmic large-DNA virus infection of a cellular host for replication. Putative virophages infecting algal hosts are classified together with polinton-like viruses, transposable elements widely found in algal genomes, yet the lack of isolated strains raises questions about their existence a...
Zinc is an essential trace metal for oceanic primary producers with the highest concentrations in polar oceans. However, its role in the biological functioning and adaptive evolution of polar phytoplankton remains enigmatic. Here, we have applied a combination of evolutionary genomics, quantitative proteomics, co-expression analyses and cellular ph...
Polar seas are under threat of enhanced UV-radiation as well as increasing shipping activities. Considering the ecological importance of marine viruses, it is timely to study the impact of UV-AB on Arctic phytoplankton host-virus interactions and also test the efficacy of ballast water (BW) UV-C treatment on virus infectivity. This study examined t...
Eukaryotic phytoplankton are responsible for at least 20% of annual global carbon fixation. Their diversity and activity are shaped by interactions with prokaryotes as part of complex microbiomes. Although differences in their local species diversity have been estimated, we still have a limited understanding of environmental conditions responsible...
For nearly a century, phytoplankton spring blooms have largely been explained in the context of abiotic factors regulating cellular division rates (e.g., mixed-layer light levels). However, the accumulation of new phytoplankton biomass represents a mismatch between phytoplankton division and mortality rates. The balance between division and loss, t...
Applying low concentrations of hydrogen peroxide (H2O2) to lakes is an emerging method to mitigate harmful cyanobacterial blooms. While cyanobacteria are very sensitive to H2O2, little is known about the impacts of these H2O2 treatments on other members of the microbial community. In this study, we investigated changes in microbial community compos...
Phytoplankton form the base of marine food webs and are a primary means for carbon export in the Southern Ocean, a key area for global pCO 2 drawdown. Viral lysis and grazing have very different effects on microbial community dynamics and carbon export, yet, very little is known about the relative magnitude and ecological impact of viral lysis on n...
The relative flow of carbon through the viral shunt and the microbial loop is a pivotal factor controlling the contribution of secondary production to the food web and to rates of nutrient remineralization and respiration. The current study examines the significance of these processes in the coastal waters of the Antarctic during the productive aus...
Variable physical conditions such as vertical turbulent exchange, internal wave, and mesoscale eddy action affect the availability of light and
nutrients for phytoplankton (unicellular algae) growth. It is hypothesized that changes in ocean temperature may affect ocean vertical density
stratification, which may hamper vertical exchange. In order to...
Fjords on the west coast of Spitsbergen experience variable Arctic and Atlantic climate signals that drive seasonal and inter-annual variability of phytoplankton productivity and composition, by mechanisms that are not fully resolved. To this end, a time series (2013–2018) of Kongsfjorden (N 78°54.2, E 11°54.0) phytoplankton pigments, ocean physics...
Sponges are ubiquitous components of various deep-sea habitats, including cold water coral reefs, and form deep-sea sponge grounds. Although the deep sea is generally considered to be a food-limited environment, these ecosystems are known to be hotspots of biodiversity and carbon cycling. To assess the role of sponges in the carbon cycling of deep-...
How microbial populations interact influences the availability and flux of organic carbon in the ocean. Understanding how these interactions vary over broad spatial scales is therefore a fundamental aim of microbial oceanography. In this study, we assessed variations in the abundances, production, virus and grazing induced mortality of heterotrophi...
Sponges are ubiquitous components of various deep-sea habitats, including cold water coral reefs and deep-sea sponge grounds. Despite being surrounded by oligotrophic waters, these ecosystems are known to be hotspots of biodiversity and carbon cycling. To assess the role of sponges in the carbon cycling of deep-sea ecosystems, we studied the energy...
Variable physical conditions such as vertical turbulent exchange, internal wave and mesoscale eddy action, affect the availability of light and nutrients for phytoplankton (unicellular algae) growth. It is hypothesized that changes in ocean temperature may affect ocean vertical density stratification, which may hamper vertical exchange. In order to...
Viruses are important drivers in the cycling of carbon and nutrients in aquatic ecosystems. Since viruses are obligate parasites, their production completely depends on growth and metabolism of hosts and therefore can be affected by climate change. Here, we investigated if warming (+4°C) can change the outcome of viral infections in a natural fresh...
Viruses are the most abundant biological entities in marine environments, however, despite its potential ecological implications, little is known about virus removal by ambient non-host organisms. Here, we examined the effects of a variety of non-host organisms on the removal of viruses. The marine algal virus PgV-07T (infective to Phaeocystis glob...
Copepods that enter dormancy, such as Calanoides acutus, are key primary consumers in Southern Ocean food webs where they convert a portion of the seasonal phytoplankton biomass into a longer-term energetic and physiological resource as wax ester (WE) reserves. We studied the seasonal abundance and lipid profiles of pre-adult and adult C. acutus in...
Viruses in the family Phycodnaviridae infect aquatic algae and they are present in inland, coastal and marine environments throughout the world, sometimes in very high concentrations. Consequently, phycodnaviruses contribute to microbial composition and diversity, nutrient cycling, carbon flow, and other biogeochemically-important processes in aque...
Viruses infecting photosynthetic protists, belonging to an emerging subgroup within the Mimiviridae family, are large double-stranded DNA icosahedrical viruses with capsids between 140 to 310 nm and genomes ranging from 340 to 668 kbp. They all replicate in the host’s cytoplasm. Viruses within this subfamily infect different species of prymnesiophy...
To date, several tens of viruses infecting various eukaryotic algae, comprising single-stranded (ss) RNA, double-stranded (ds) RNA, ssDNA, and dsDNA viruses have been isolated and characterized to different extents. DsDNA viruses infecting algae are now classified in the families Phycodnaviridae or Mimiviridae, which are described in other chapters...
Climate change at the Western Antarctic Peninsula (WAP) is predicted to cause major changes in phytoplankton community composition, however, detailed seasonal field data remain limited and it is largely unknown how (changes in) environmental factors influence cell size and ecosystem function. Physicochemical drivers of phytoplankton community abund...
We validated simulations of the Earth system model (ESM) EC-Earth-NEMO of present-day temperature, salinity, nutrient, and chlorophyll a profiles with in situ observations in the Northeast Atlantic Ocean (29–63º N). Simulations with standard parametrization (run 1) and improved parametrization of vertical mixing (run 2) were compared. Run 1 showed...
Viruses are a major source of mortality for phytoplankton and bacteria and are therefore seen as drivers of food web dynamics and biogeochemical cycling in the marine pelagic environment. Previous studies have shown that aquatic viruses adsorb to suspended sediment, which theoretically decreases the mortality pressure on their microbial hosts. This...
Viruses and microzooplankton grazers represent major sources of mortality for marine phytoplankton and bacteria, redirecting the flow of organic material throughout the world's oceans. Here, we investigate the use of nonlinear population models of interactions between phytoplankton, viruses, and grazers as a means to quantitatively constrain the fl...
Intensification of human activities has led to changes in the availabilities of CO 2 and nutrients in freshwater ecosystems, which may greatly alter the physiological status of phytoplankton. Viruses require hosts for their reproduction and shifts in phytoplankton host physiology through global environmental change may thus affect viral infections...
The west Antarctic Peninsula (WAP) region has undergone significant changes in temperature and seasonal ice dynamics since the mid-twentieth century, with strong impacts on the regional ecosystem, ocean chemistry and hydrographic properties. Changes to these long-term trends of warming and sea ice decline have been observed in the 21st century, but...
Over the past few decades, the Arctic region has been strongly affected by global warming, leading to increased sea surface temperatures and melting of land and sea ice. Marine terminating (tide-water) glaciers are expected to show higher melting and calving rates, with an increase in the input of fine sediment particles in the coastal marine envir...
Incubation experiments comprising Saharan dust additions were conducted in the tropical North Atlantic Ocean along an east-west transect at 12°N to study the phytoplankton response to nutrient release in oligotrophic seawater conditions. Experiments were performed at three stations (M1, M3, M4), mimicking wet and dry deposition of low and high amou...
Arctic marine ecosystems are currently undergoing rapid changes in temperature and light availability. Picophytoplankton, such as Micromonas polaris, are predicted to benefit from such changes. However, little is known about how these environmental changes affect the viruses that exert a strong mortality pressure on these small but omnipresent alga...
Long chain alkyl diols (LCDs) are widespread in the marine water
column and sediments, but their biological sources are mostly unknown. Here
we combine lipid analyses with 18S rRNA gene amplicon sequencing on suspended
particulate matter (SPM) collected in the photic zone of the western tropical
North Atlantic Ocean at 24 stations to infer relation...
Coastal seas like the North Sea have been subject to major changes in nutrient inputs over the last decades, resulting in shifts of limiting nutrients for phytoplankton communities. Here we investigated the seasonal and spatial distribution and synthesis patterns of individual amino acids and distinct fatty acid groups and show how these were affec...
Cylindrospermopsis (Raphidiopsis) raciborskii is an invasive, filamentous, nitrogen‐fixing cyanobacterium that forms frequent blooms in freshwater habitats. While viruses play key roles in regulating the abundance, production, and diversity of their hosts in aquatic ecosystems, the role(s) of viruses in the ecology of C. raciborskii is almost unexp...
The discovery of giant viruses in unicellular eukaryotic hosts has raised new questions on the nature of viral life. Although many steps in the infection cycle of giant viruses have been identified, the quantitative life history traits associated with giant virus infection remain unknown or poorly constrained. In this study, we provide the first es...
Glacial meltwater discharge in fjords on the west coast of Spitsbergen is increasing due to climate change. The influence of this discharge on phytoplankton nutrient limitation, composition, productiv-ity and photophysiology was investigated in central (M) and inner (G) Kongsfjorden (79°N, 11°40’E). Freshwater influx intensified stratification duri...
In situ mesocosm experiments on the effect of ocean acidification (OA) are an important tool for investigating potential OA-induced changes in natural plankton communities. In this study we combined results from various in-situ mesocosm studies in two different ocean regions (Arctic and temperate waters) to reveal general patterns of plankton commu...
Long chain alkyl diols (LCDs) are widespread in the marine water column and sediments but their biological sources are mostly unknown. Here we combine lipid analyses with 18S rRNA gene amplicon sequencing on suspended particulate matter (SPM) collected in the photic zone of the tropical North Atlantic at 24 stations to infer relationships between L...
The Netherlands Organisation for Scientific Research and the British Antarctic Survey have built a transportable laboratory facility, named the Dirck Gerritsz Laboratory, to accommodate new scientific research on and from the western Antarctic Peninsula. The design provides a flexible, modular, plug-and-play, innovative and sustainable laboratory s...
Diatom–diazotroph associations (DDAs) include marine heterocystous cyanobacteria found as exosymbionts and endosymbionts in multiple diatom
species. Heterocysts are the site of N2 fixation and have thickened cell walls containing unique heterocyst glycolipids
which maintain a low oxygen environment within the heterocyst. The endosymbiotic cyanobact...
Phaeocystis globosa virus 16T is a giant virus that belongs to the so-called nucleo-cytoplasmic large DNA virus (NCLDV) group. Its linear dsDNA genome contains an almost full complement of genes required to participate in viral base excision repair (BER). Among them is a gene coding for a bimodular protein consisting of an N-terminal Polβ-like core...
The original publication of this Article included analysis of virus and microbial cell abundances and virus-to-microbial cell ratios. Data in the Article came from 25 studies intended to be exclusively from marine sites. However, 3 of the studies included in the original unified dataset were erroneously classified as marine sites during compilation...
Viruses were recognized as the causative agents of fish diseases, such as infectious pancreatic necrosis and Oregon sockeye disease, in the early 1960s [1], and have since been shown to be responsible for diseases in all marine life from bacteria to protists, mollusks, crustaceans, fish and mammals [2].[...]
Ocean acidification resulting from the uptake of anthropogenic carbon
dioxide (CO2) by the ocean is considered a major threat to marine
ecosystems. Here we examined the effects of ocean acidification on microbial
community dynamics in the eastern Baltic Sea during the summer of 2012 when
inorganic nitrogen and phosphorus were strongly depleted. Lar...
Diatom-diazotroph associations (DDAs) include marine heterocystous cyanobacteria found as exoand endosymbionts in multiple diatom species. Heterocysts are the site of N2 fixation and have a thickened cell walls containing unique heterocyst glycolipids which maintain a low oxygen environment within the heterocyst. The endosymbiotic cyanobacteria Ric...
Marine viruses are key drivers of host diversity, population dynamics and biogeochemical cycling and contribute to the daily flux of billions of tons of organic matter. Despite recent advancements in metagenomics, much of their biodiversity remains uncharacterized. Here we report a data set of 27,346 marine virome contigs that includes 44 complete...
Global climate change-induced warming of the Artic seas is predicted to shift the phytoplankton community towards dominance of smaller-sized species due to global warming. Yet, little is known about their viral mortality agents despite the ecological importance of viruses regulating phytoplankton host dynamics and diversity. Here we report the isol...