Chu Han

Guangdong provincial people's hospital · Radiology

Ultrasonography plays an essential role in breast cancer diagnosis. Current deep learning based studies train the models on either images or videos in a centralized learning manner, lacking consideration of joint benefits between two different modality models or the privacy issue of data centralization. In this study, we propose the first decentral...

Objectives Although neoadjuvant immunochemotherapy has been widely applied in non-small cell lung cancer (NSCLC), predicting treatment response remains a challenge. We used pretreatment multimodal CT to explore deep learning-based immunochemotherapy response image biomarkers. Methods This study retrospectively obtained non-contrast enhanced and co...

Predicting the gene mutation status in whole slide images (WSI) is crucial for the clinical treatment, cancer management, and research of gliomas. With advancements in CNN and Transformer algorithms, several promising models have been proposed. However, existing studies have paid little attention on fusing multi-magnification information, and the m...

Magnetic resonance imaging (MRI)-based deep neural networks (DNN) have been widely developed to perform prostate cancer (PCa) classification. However, in real-world clinical situations, prostate MRIs can be easily impacted by rectal artifacts, which have been found to lead to incorrect PCa classification. Existing DNN-based methods typically do not...

Histopathological tissue classification is a fundamental task in computational pathology. Deep learning (DL)-based models have achieved superior performance but centralized training suffers from the privacy leakage problem. Federated learning (FL) can safeguard privacy by keeping training samples locally, while existing FL-based frameworks require...

Background: Contrast-enhanced CT scans provide a means to detect unsuspected colorectal cancer. However, colorectal cancers in contrast-enhanced CT without bowel preparation may elude detection by radiologists. We aimed to develop a deep learning (DL) model for accurate detection of colorectal cancer, and evaluate whether it could improve the detec...

Automated colorectal cancer (CRC) segmentation in medical imaging is the key to achieving automation of CRC detection, staging, and treatment response monitoring. Compared with magnetic resonance imaging (MRI) and computed tomography colonography (CTC), conventional computed tomography (CT) has enormous potential because of its broad implementation...

Background Tumor-stroma interactions, as indicated by tumor-stroma ratio (TSR), offer valuable prognostic stratification information. Current histological assessment of TSR is limited by tissue accessibility and spatial heterogeneity. We aimed to develop a multitask deep learning (MDL) model to noninvasively predict TSR and prognosis in colorectal...

Accurate and automated segmentation of breast tumors in dynamic contrast-enhanced magnetic resonance imaging (DCE-MRI) plays a critical role in computer-aided diagnosis and treatment of breast cancer. However, this task is challenging, due to random variation in tumor sizes, shapes, appearances, and blurred boundaries of tumors caused by inherent h...

Accurate segmentation of polyps in endoscopic images is pivotal for the early detection and diagnosis of colorectal cancer (CRC). Nonetheless, the varied appearance of polyp foregrounds and the intricate background interference significantly diminish the efficacy of pixel-level predictions. To address this issue, we propose a multi-scale perception...

Accurate segmentation of epithelium in Hematoxylin-Eosin (HE)-stained oropharyngeal cancer (OPC) pathological images is the premise for quantitative diagnosis. However, the pathological features of OPC are highly heterogeneous in morphology, while the appearance may be similar between epithelium and other tissues (such as stroma), which increases t...

Medical imaging artificial intelligence is a revolutionary product resulting from the combined effects of new-generation artificial intelligence technologies such as machine learning and deep learning, high-performance computing capabilities, and medical imaging big data [1]. It is also an important development direction in the medical field today....

Automatic and accurate 3D segmentation of teeth in dental cone beam computed tomography (CBCT) images is a prerequisite for computer-aided dental analysis. However, due to variations in dental anatomy, different imaging protocols, and limitations in accessing public datasets, developing an automated algorithm for dental analysis is challenging. Thi...

Intracerebral hemorrhage (ICH) is the second most common and deadliest form of stroke. Despite medical advances, predicting treatment outcomes for ICH remains a challenge. This paper proposes a novel prognostic model that utilizes both imaging and tabular data to predict treatment outcome for ICH. Our model is trained on observational data collecte...

Background Background parenchymal enhancement (BPE) shows high association with cancer risk and treatment response to neo-adjuvant chemotherapy (NAC) in breast cancer. However, it still lacks automated method for BPE characterization. Methods In this retrospective study, we ultimately included 894 patients from three cohorts (GDPH, CUM1 and I-SPY2)...

Class activation mapping~(CAM), a visualization technique for interpreting deep learning models, is now commonly used for weakly supervised semantic segmentation~(WSSS) and object localization~(WSOL). It is the weighted aggregation of the feature maps by activating the high class-relevance ones. Current CAM methods achieve it relying on the trainin...

Dynamic contrast-enhanced magnetic resonance imaging (DCE-MRI) allows screening, follow up, and diagnosis for breast tumor with high sensitivity. Accurate tumor segmentation from DCE-MRI can provide crucial information of tumor location and shape, which significantly influences the downstream clinical decisions. In this paper, we aim to develop an...

The increased amount of tertiary lymphoid structures (TLSs) is associated with a favorable prognosis in patients with lung adenocarcinoma (LUAD). However, evaluating TLSs manually is an experience-dependent and time-consuming process, which limits its clinical application. In this multi-center study, we developed an automated computational workflow...

Neo-adjuvant chemotherapy (NAC) is one of the main treatments in breast cancer, given before surgery to reduce the tumor's size and increase the surgical outcome's success rate. Predicting the response of breast cancer patients to NAC can be challenging, and inaccurate prediction may lead to suboptimal treatment outcomes. Previous studies have show...

Breast tumor segmentation is an important task in medical image analysis, especially in the diagnosis and treatment of breast cancer. Magnetic resonance imaging (MRI) is a widely used imaging modality for breast tumor segmentation due to its high spatial and temporal resolution. However, there are several challenges associated with breast tumor seg...

Intracerebral hemorrhage (ICH) is the second most common and deadliest form of stroke. Despite medical advances, predicting treat ment outcomes for ICH remains a challenge. This paper proposes a novel prognostic model that utilizes both imaging and tabular data to predict treatment outcome for ICH. Our model is trained on observational data collect...

Computational histopathology is focused on the automatic analysis of rich phenotypic information contained in gigabyte whole slide images, aiming at providing cancer patients with more accurate diagnosis, prognosis, and treatment recommendations. Nowadays deep learning is the mainstream methodological choice in computational histopathology. Transfo...

Mitosis detection is one of the fundamental tasks in computational pathology, which is extremely challenging due to the heterogeneity of mitotic cell. Most of the current studies solve the heterogeneity in the technical aspect by increasing the model complexity. However, lacking consideration of the biological knowledge and the complex model design...

Background Breast cancer is highly heterogeneous, resulting in different treatment responses to neoadjuvant chemotherapy (NAC) among patients. A noninvasive quantitative measure of intratumoral heterogeneity (ITH) may be valuable for predicting treatment response. Purpose To develop a quantitative measure of ITH on pretreatment MRI scans and test i...

High throughput nuclear segmentation and classification of whole slide images (WSIs) is crucial to biological analysis, clinical diagnosis and precision medicine. With the advances of CNN algorithms and the continuously growing datasets, considerable progress has been made in nuclear segmentation and classification. However, few works consider how...

Background and objective: A high degree of lymphocyte infiltration is related to superior outcomes amongst patients with lung adenocarcinoma. Recent evidence indicates that the spatial interactions between tumours and lymphocytes also influence the anti-tumour immune responses, but the spatial analysis at the cellular level remains insufficient....

Nuclear detection, segmentation and morphometric profiling are essential in helping us further understand the relationship between histology and patient outcome. To drive innovation in this area, we setup a community-wide challenge using the largest available dataset of its kind to assess nuclear segmentation and cellular composition. Our challenge...

Brain tumor segmentation (BTS) in magnetic resonance image (MRI) is crucial for brain tumor diagnosis, cancer management and research purposes. With the great success of the ten-year BraTS challenges as well as the advances of CNN and Transformer algorithms, a lot of outstanding BTS models have been proposed to tackle the difficulties of BTS in dif...

Histopathological tissue classification is a fundamental task in computational pathology. Deep learning-based models have achieved superior performance but centralized training with data centralization suffers from the privacy leakage problem. Federated learning (FL) can safeguard privacy by keeping training samples locally, but existing FL-based f...

Background: Preoperative assessment of lymphovascular invasion (LVI) in invasive breast cancer (IBC) is of high clinical relevance for treatment decision-making and prognosis. Purpose: To investigate the associations of preoperative clinical and magnetic resonance imaging (MRI) characteristics with LVI and disease-free survival (DFS) by using ma...

Ultrasonography is an important routine examination for breast cancer diagnosis, due to its non-invasive, radiation-free and low-cost properties. However, the diagnostic accuracy of breast cancer is still limited due to its inherent limitations. Then, a precise diagnose using breast ultrasound (BUS) image would be significant useful. Many learning-...

Background Tumor histomorphology analysis plays a crucial role in predicting the prognosis of resectable lung adenocarcinoma (LUAD). Computer-extracted image texture features have been previously shown to be correlated with outcome. However, a comprehensive, quantitative, and interpretable predictor remains to be developed. Methods In this multi-c...

A high abundance of tumor-infiltrating lymphocytes (TILs) has a positive impact on the prognosis of patients with lung adenocarcinoma (LUAD). We aimed to develop and validate an artificial intelligence-driven pathological scoring system for assessing TILs on H&E-stained whole-slide images of LUAD. Deep learning-based methods were applied to calcula...

Color inconsistency is an inevitable challenge in computational pathology, which harms the pathological image analysis methods, especially the learning-based models. A series of approaches have been proposed for stain normalization. However, most of them are lack of flexibility in practice. In this paper, we formulated stain normalization as a digi...

Rationale and Objectives To develop and validate a simplified scoring system by integrating MRI and clinicopathologic features for preoperative prediction of axillary pathologic complete response (pCR) to neoadjuvant chemotherapy (NAC) in clinically node-positive breast cancer. Materials and Methods A total of 389 patients from three hospitals wer...

Tissue-level semantic segmentation is a vital step in computational pathology. Fully-supervised models have already achieved outstanding performance with dense pixel-level annotations. However, drawing such labels on the giga-pixel whole slide images is extremely expensive and time-consuming. In this paper, we use only patch-level classification la...

Purpose: To evaluate the ability of fine-grained annotations to overcome shortcut learning in deep learning (DL)-based diagnosis using chest radiographs. Materials and methods: Two DL models were developed using radiograph-level annotations (disease present: yes or no) and fine-grained lesion-level annotations (lesion bounding boxes), respective...

Brain tumor segmentation (BTS) in magnetic resonance image (MRI) is crucial for brain tumor diagnosis, cancer management and research purposes. With the great success of the ten-year BraTS challenges as well as the advances of CNN and Transformer algorithms, a lot of outstanding BTS models have been proposed to tackle the difficulties of BTS in dif...

Automatic tissue segmentation in whole-slide images (WSIs) is a critical task in hematoxylin and eosin- (H&E-) stained histopathological images for accurate diagnosis and risk stratification of lung cancer. Patch classification and stitching the classification results can fast conduct tissue segmentation of WSIs. However, due to the tumour heteroge...

Objectives: To investigate whether breast edema characteristics at preoperative T2-weighted imaging (T2WI) could help evaluate axillary lymph node (ALN) burden in patients with early-stage breast cancer. Methods: This retrospective study included women with clinical T1 and T2 stage breast cancer and preoperative MRI examination in two independen...

Background High immune infiltration is associated with favourable prognosis in patients with non-small-cell lung cancer (NSCLC), but an automated workflow for characterizing immune infiltration, with high validity and reliability, remains to be developed. Methods We performed a multicentre retrospective study of patients with completely resected N...

Ultrasonography is an important routine examination for breast cancer diagnosis, due to its non-invasive, radiation-free and low-cost properties. However, it is still not the first-line screening test for breast cancer due to its inherent limitations. It would be a tremendous success if we can precisely diagnose breast cancer by breast ultrasound i...

Cells/nuclei deliver massive information of microenvironment. An automatic nuclei segmentation approach can reduce pathologists’ workload and allow precise quantization of the microenvironment for biological and clinical researches. Existing deep learning models have achieved outstanding performance under the supervision of large amount of labeled...

Lung cancer is the leading cause of cancer death worldwide, and adenocarcinoma (LUAD) is the most common subtype. Exploiting the potential value of the histopathology images can promote precision medicine in oncology. Tissue segmentation is the basic upstream task of histopathology image analysis. Existing deep learning models have achieved superio...

Purpose Intra-tumoral tertiary lymphoid structures (TLSs) are associated with a favorable prognosis for patients with hepatocellular carcinoma (HCC). We aimed to identify image features related to TLSs and develop a nomogram for preoperative noninvasive prediction of intra-tumoral TLSs. Methods This retrospective study enrolled patients with HCC w...

Histopathological tissue classification is a simpler way to achieve semantic segmentation for the whole slide images, which can alleviate the requirement of pixel-level dense annotations. Existing works mostly leverage the popular CNN classification backbones in computer vision to achieve histopathological tissue classification. In this paper, we p...

Color inconsistency is an inevitable challenge in computational pathology, which generally happens because of stain intensity variations or sections scanned by different scanners. It harms the pathological image analysis methods, especially the learning-based models. A series of approaches have been proposed for stain normalization. However, most o...

Nuclear segmentation and classification is an essential step for computational pathology. TIA lab from Warwick University organized a nuclear segmentation and classification challenge (CoNiC) for H&E stained histopathology images in colorectal cancer based on the Lizard dataset. In this challenge, computer algorithms should be able to segment and r...

Objective: This study aimed to establish a method to predict the overall survival (OS) of patients with stage I-III colorectal cancer (CRC) through coupling radiomics analysis of CT images with the measurement of tumor ecosystem diversification. Methods: We retrospectively identified 161 consecutive patients with stage I-III CRC who had underwen...

Reliable nasopharyngeal carcinoma (NPC) segmentation plays an important role in radiotherapy planning. However, recent deep learning methods fail to achieve satisfactory NPC segmentation in magnetic resonance (MR) images, since NPC is infiltrative and typically has a small or even tiny volume with indistinguishable border, making it indiscernible f...

Histopathological tissue classification is a fundamental task in pathomics cancer research. Precisely differentiating different tissue types is a benefit for the downstream researches, like cancer diagnosis, prognosis and etc. Existing works mostly leverage the popular classification backbones in computer vision to achieve histopathological tissue...

Background Profound heterogeneity in prognosis has been observed in colorectal cancer (CRC) patients with intermediate levels of disease (stage II–III), advocating the identification of valuable biomarkers that could improve the prognostic stratification. This study aims to develop a deep learning-based pipeline for fully automatic quantification o...

Tissue-level semantic segmentation is a vital step in computational pathology. Fully-supervised models have already achieved outstanding performance with dense pixel-level annotations. However, drawing such labels on the giga-pixel whole slide images is extremely expensive and time-consuming. In this paper, we use only patch-level classification la...

Semi-supervised learning has been recently employed to solve problems from medical image segmentation due to challenges in acquiring sufficient manual annotations, which is an important prerequisite for building high-performance deep learning methods. Since unlabeled data is generally abundant, most existing semi-supervised approaches focus on how...

Background Distinguishing anorectal malignant melanoma from low rectal cancer remains challenging due to the overlap of clinical symptoms and imaging findings. We aim to investigate whether combining quantitative and qualitative magnetic resonance imaging (MRI) features could differentiate anorectal malignant melanoma from low rectal cancer. Method...

To address the color cast and low contrast of underwater images, we propose a color correction and adaptive contrast enhancement algorithm for underwater image enhancement. In our work, we first design the dedicated fractions to compensate the lower color channels, which are calculated by considering the ratio of the differences between the upper a...

Diabetic retinopathy, age-related macular degeneration and glaucoma, are the leading cauor head movements. The problem turns out to be more severe if the images were corrupted by ill conditions on eyes, such as micro-bleeding and plaques. To tackle this problem, we propose a multi-source registration model for retinal fundus images. Our proposed me...

The accurate classification of gliomas is essential in clinical practice. It is valuable for clinical practitioners and patients to choose the appropriate management accordingly, promoting the development of personalized medicine. In the MICCAI 2020 Combined Radiology and Pathology Classification Challenge, 4 MRI sequences and a WSI image are provi...

Scene labeling or parsing aims to assign pixelwise semantic labels for an input image. Existing CNN-based models cannot leverage the label dependencies, while RNN-based models predict labels within the local context. In this paper, we propose a fast LSTM scene labeling network via structural inference. A minimum spanning tree is used to build the i...

Objectives: To develop and validate a radiomics nomogram for preoperative prediction of tumor histologic grade in gastric adenocarcinoma (GA). Methods: This retrospective study enrolled 592 patients with clinicopathologically confirmed GA (low-grade: n=154; high-grade: n=438) from January 2008 to March 2018 who were divided into training (n=450)...

Multi-view clustering seeks an underlying partition of the data from multiple views. Organizing the data into a tensor and then learning a self-expressive latent one to exploit cross-view information has attracted much attention. Most of the recent works mainly focus on the tensor representation, but they fail to directly extract the task-driving a...

In this paper, we propose a simple yet effective approach, named Triple Excitation Network, to reinforce the training of video salient object detection (VSOD) from three aspects, spatial, temporal, and online excitations. These excitation mechanisms are designed following the spirit of curriculum learning and aim to reduce learning ambiguities at t...

With the explosive growth of action categories, zero-shot action recognition aims to extend a well-trained model to novel/unseen classes. To bridge the large knowledge gap between seen and unseen classes, in this brief, we visually associate unseen actions with seen categories in a visually connected graph, and the knowledge is then transferred fro...