Christoph Bleidorn

Christoph Bleidorn
Georg-August-Universität Göttingen | GAUG · Animal Evolution and Biodiversity

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222
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Publications (222)
Article
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Wolbachia (Alphaproteobacteria, Rickettsiales) is the most common, and arguably one of the most important inherited symbionts. Molecular differentiation of Wolbachia strains is routinely performed with a set of five multilocus sequence typing (MLST) markers. However, since its inception in 2006, the performance of MLST in Wolbachia strain typing ha...
Article
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The genus Wolbachia (Alphaproteobacteria) comprises the most abundant inherited intracellular bacteria(1). Despite their relevance as manipulators of human pathogen transmission(2) and arthropod reproduction(3), many aspects of their evolutionary history are not well understood(4). In arthropods, Wolbachia infections are typically transient on evol...
Article
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Next generation sequencing transformed the field of evolutionary biology and high throughput sequencing platforms are routinely used in phylogenomic, population genomic or metagenomic studies. Here I review the recent technical advancements of third generation sequencing instruments, thereby covering nanopore sequencing and single molecule real-tim...
Article
Annelida is an ecologically and morphologically diverse phylum within the Lophotrochozoa whose members occupy a wide range of environments and show diverse life styles. The phylogeny of this group comprising more than 17,000 species remained controversial for a long time. By using next-generation sequencing and phylogenomic analyses of huge data ma...
Article
Annelida, the ringed worms, is a highly diverse animal phylum that includes more than 15,000 described species and constitutes the dominant benthic macrofauna from the intertidal zone down to the deep sea. A robust annelid phylogeny would shape our understanding of animal body-plan evolution and shed light on the bilaterian ground pattern. Traditio...
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Soft-bodied fossils of annelids from the Cambrian are relatively rare but provide vital insights into the early evolution and diversification of annelids. Here we describe a new annelid, Xiaoshibachaeta biodiversa gen. et sp. nov., from the early Cambrian (Stage 3) Xiaoshiba biota of Kunming, Yunnan Provence, China. This worm is obliquely oriented...
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Molecular clock estimates suggest the origin of Annelida dates back to the Ediacaran period, which is in discordance with the first appearance of this taxon in the early Cambrian, as evidenced by the fossil records of stem-group and basally branching crown-group annelids. Using new material from the early Cambrian Guanshan biota (Cambrian Series 2,...
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Low-coverage whole-genome sequencing (also known as “genome skimming”) is becoming an increasingly affordable approach to large-scale phylogenetic analyses. While already routinely used to recover organellar genomes, genome skimming is rather rarely utilized for recovering single-copy nuclear markers. One reason might be that only few tools exist t...
Article
Spider orb webs have evolved to stop flying prey, fast and slow alike. One of the main web elements dissipating impact energy is the radial fibers, or major ampullate silks, which possess a toughness surpassing most man-made materials. Orb webs are extended phenotypes, and as such their architectural elements, including major ampullate silks, have...
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Im Rahmen von Projekten und Gutachten gelangen in den letzten Jahren im Mittelgebirgsraum Niedersachsens im Landkreis Göttingen (Südost-Niedersachsen) bemerkenswerte Stechimmenfunde (Hymenoptera: Aculeata). Erstnachweise für Niedersachsen konnten von der Wildbiene Nomada pleurosticta (Herrich-Schäffer, 1839), der Goldwespe Chrysis leachii Shuckard,...
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Regenerative abilities vary dramatically across animals. Even amongst planarian flatworms, well-known for complete regeneration from tiny body fragments, some species have restricted regeneration abilities while others are almost entirely regeneration incompetent. Here, we assemble a diverse live collection of 40 planarian species to probe the evol...
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The availability of public genomic resources can greatly assist biodiversity assessment, conservation, and restoration efforts by providing evidence for scientifically informed management decisions. Here we survey the main approaches and applications in biodiversity and conservation genomics, considering practical factors, such as cost, time, prere...
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The availability of public genomic resources can greatly assist biodiversity assessment, conservation, and restoration efforts by providing evidence for scientifically informed management decisions. Here we survey the main approaches and applications in biodiversity and conservation genomics, considering practical factors, such as cost, time, prere...
Preprint
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Why some animals can regenerate while many others cannot remains a fascinating question. Even amongst planarian flatworms, well-known for their ability to regenerate complete animals from small body fragments, species exist that have restricted regeneration abilities or are entirely regeneration incompetent. Towards the goal of probing the evolutio...
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Objectives Environmental constraints, especially temperature, have been identified as a key in understanding host-symbiont relationships, as they can directly impact the fitness of the symbiont population and the host development. Here we investigated the effect of temperature during the host development on the density of intracellular bacteria of...
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Das südniedersächsische FFH-Gebiet 141 „Ballertasche“ ist als extensiv genutzte Kiesgrube ein vielversprechendes Habitat für viele Tiergruppen. Die Wildbienenfauna der Ballertasche war bisher unerforscht, unsere im Jahr 2020 durchgeführte Untersuchung stellt eine Ersterfassung dar. Dabei konnten 136 Wildbienenarten aus 26 Gattungen nachgewiesen wer...
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Antagonistic interactions can affect population growth and dispersal of an invasive species. Wolbachia are intracellular endosymbiont bacteria that infect arthropod and nematode hosts and are able to manipulate reproduction, which in some cases leads to cocladogenesis. Moreover, the presence of the strictly maternally transferred Wolbachia in a pop...
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Up to 60% of insects are infected with symbiont intracellular alphaproteobacteria of the genus Wolbachia , which are often able to manipulate their host’s reproduction. Here, we report the annotated draft genome sequence of strain w Tcon from the confused flour beetle, Tribolium confusum , based on long- and short-read sequence data. The assembled...
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Progress in genome sequencing now enables the large-scale generation of reference genomes. Various international initiatives aim to generate reference genomes representing global biodiversity. These genomes provide unique insights into genomic diversity and architecture, thereby enabling comprehensive analyses of population and functional genomics,...
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Auteurs : European Reference Genome Atlas (ERGA) Consortium 3
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Progress in genome sequencing now enables the large-scale generation of reference genomes. Various international initiatives aim to generate reference genomes representing global biodiversity. These genomes provide unique insights into genomic diversity and architecture, thereby enabling comprehensive analyses of population and functional genomics,...
Article
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Objectives DNA barcoding became an effective method for the identification and monitoring of bees. However, standard primer pairs used for barcoding often result in (co-) amplification of bacterial endosymbionts of the genus Wolbachia , which are widespread among bee species. Here we designed a new primer pair and compared it with the performance o...
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Endosymbionts are widely distributed in insects and can strongly affect their host ecology. The common green lacewing (Chrysoperla carnea) is a neuropteran insect which is widely used in biological pest control. However, their endosymbionts and their interactions with their hosts have not been very well studied. Therefore, we screened for endosymbi...
Chapter
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The predominance of sex in eukaryotes is still enigmatic. Sex, a composed process of meiosis and mixis cycles, confers high costs but the selective advantages remain unclear. In this review, we focus on potentially detrimental effects of asexuality on genome evolution. Theory predicts that asexual lineages should suffer from lack of meiotic DNA rep...
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Syllidae is an annelid family characterized by its complex life cycles involving some of the most outstanding annelid reproductive strategies. Syllid reproductive modes sometimes imply the modification of the posterior body to form independent reproductive units (schizogamy) or the development of swimming adults (epigamy). These modes of sexual rep...
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Word-based or ‘alignment-free’ methods for phylogeny inference have become popular in recent years. These methods are much faster than traditional, alignment-based approaches, but they are generally less accurate. Most alignment-free methods calculate ‘pairwise’ distances between nucleic-acid or protein sequences; these distance values can then be...
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Urbanisation is an important global driver of biodiversity change, negatively impacting some species groups whilst providing opportunities for others. Yet its impact on ecosystem services is poorly investigated. Here, using a replicated experimental design, we test how Central European cities impact flying insects and the ecosystem service of polli...
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Background: In many fields of biomedical research, it is important to estimate phylogenetic distances between taxa based on low-coverage sequencing reads. Major applications are, for example, phylogeny reconstruction, species identification from small sequencing samples, or bacterial strain typing in medical diagnostics. Results: We adapted our...
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Background: Annelids exhibit remarkable postembryonic developmental abilities. Most annelids grow during their whole life by adding segments through the action of a segment addition zone (SAZ) located in front of the pygidium. In addition, they show an outstanding ability to regenerate their bodies. Experimental evidence and field observations sho...
Article
Lophotrochozoa (also called Spiralia), the sister taxon of Ecdysozoa, includes animal taxa with disparate body plans such as the segmented annelids, the shell bearing molluscs and brachiopods, the colonial bryozoans, the endoparasitic acanthocephalans and the acoelomate platyhelminths. Phylogenetic relationships within Lophotrochozoa have been noto...
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Background Lacerta viridis and L. bilineata are sister species of European green lizards (eastern and western clades respectively), which until recently were grouped together as the L. viridis complex. Genetic incompatibilities were observed between lacertid populations through crossing experiments, which led to the delineation of two separate spec...
Article
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Word-based or ‘alignment-free’ sequence comparison has become an active research area in bioinformatics. While previous word-frequency approaches calculated rough measures of sequence similarity or dissimilarity, some new alignment-free methods are able to accurately estimate phylogenetic distances between genomic sequences. One of these approaches...
Article
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Research in evolutionary biology has been progressively influenced by big data such as massive genome and transcriptome sequencing data, scalar measurements of several phenotypes on tens to thousands of individuals, as well as from collecting worldwide environmental data at an increasingly detailed scale. The handling and analysis of such data requ...
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Background A median, segmented, annelid nerve cord has repeatedly been compared to the arthropod and vertebrate nerve cords and became the most used textbook representation of the annelid nervous system. Recent phylogenomic analyses, however, challenge the hypothesis that a subepidermal rope-ladder-like ventral nerve cord (VNC) composed of a paired...
Chapter
Word-based or ‘alignment-free’ methods for phylogeny reconstruction are much faster than traditional, alignment-based approaches, but they are generally less accurate. Most alignment-free methods calculate pairwise distances for a set of input sequences, for example from word frequencies, from so-called spaced-word matches or from the average lengt...
Article
Full-text available
Although model species have proven to be crucial for developmental biology, the evo‐devo approach requires a broader picture across phylogeny. Herein, we try to expand the range of studied annelids by presenting a transcriptome of Typosyllis antoni as a tool for the study of developmental and evolutionary processes in Syllidae. Moreover, we provide...
Preprint
Full-text available
A median, segmented, annelid nerve cord has repeatedly been compared to the arthropod and vertebrate nerve cords and became the most used textbook representation of the annelid nervous system. Recent phylogenomic analyses, however, challenge the hypothesis that a subepidermal rope-ladder-like ventral nerve cord (VNC) composed of a paired serial cha...
Preprint
Full-text available
Endosymbionts are widespread among insects and can play an essential role in host ecology. The common green lacewing (Chrysoperla carnea s. str.) is a neuropteran insect species which is widely used as a biological pest control. We screened for endosymbionts in natural and laboratory populations of the green lacewing using diagnostic PCR amplicons....
Article
Full-text available
Background: Apoid wasps and bees (Apoidea) are an ecologically and morphologically diverse group of Hymenoptera, with some species of bees having evolved eusocial societies. Major problems for our understanding of the evolutionary history of Apoidea have been the difficulty to trace the phylogenetic origin and to reliably estimate the geological a...
Preprint
Full-text available
Word-based or ‘alignment-free’ sequence comparison has become an active area of research in bioinformatics. While previous word-frequency approaches calculated rough measures of sequence similarity or dissimilarity, some new alignment-free methods are able to accurately estimate phylogenetic distances between genomic sequences. One of these approac...
Article
Full-text available
Syllidae is one of the most species rich groups within Annelida, with a wide variety of reproductive modes and different regenerative processes. Syllids have striking ability to regenerate their body anteriorly and posteriorly, which in many species is redeployed during sexual (schizogamy) and asexual (fission) reproduction. This review summarizes...