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March 1990 - May 2018
Publications
Publications (158)
Measurements of dissolved organic carbon (DOC), nitrogen (DON), and phosphorus (DOP) concentrations are used to characterize the dissolved organic matter (DOM) pool and are important components of biogeochemical cycling in the coastal ocean. Here, we present the first edition of a global database (CoastDOM v1; available at 10.1594/PANGAEA.964012, L...
Biogenic volatile organic compounds (VOCs) play key roles in coral reef ecosystems, where, together with dimethylated sulfur compounds, they are indicators of ecosystem health and are used as defense strategies and infochemicals. Assessment and prediction of the exchange rates of VOCs between the oceans and atmosphere, with implications for atmosph...
In this work, we present, for the first time, the seawater carbonate system measurements of two coastal time-series in the NW Mediterranean Sea, L’Estartit Oceanographic Station (EOS; 42.05°N 3.2542°E) and the Blanes Bay Microbial Observatory (BBMO; 41.665°N 2.805°E). At these two time-series, measurements of total alkalinity (TA), pH, and associat...
The dynamics of phytoplankton biomass and community composition is important for the functioning of marine ecosystems and ocean biogeochemical cycles. However, there is a shortage of studies addressing the interannual seasonal patterns of phytoplankton community assembly due to sampling limitations. Here we study the seasonal dynamics of eight majo...
The measurements of dissolved organic carbon (DOC), nitrogen (DON), and phosphorus (DOP) are used to characterize the dissolved organic matter (DOM) pool and are important components of biogeochemical cycling in the coastal ocean. Here, we present the first edition of a global database (CoastDOM v1; available at https://figshare.com/s/512289eb43c4f...
Background:
Microbial interactions are fundamental for Earth's ecosystem functioning and biogeochemical cycling. Nevertheless, they are challenging to identify and remain barely known. Omics-based censuses are helpful in predicting microbial interactions through the statistical inference of single (static) association networks. Yet, microbial inte...
Algal blooms are hotspots of marine primary production and play central roles in microbial ecology and global elemental cycling. Upon demise of the bloom, organic carbon is partly respired and partly transferred to either higher trophic levels, bacterial biomass production or sinking. Viral infection can lead to bloom termination, but its impact on...
Shallow-water coral reefs hold large quantities of acrylate and its precursor dimethylsulfoniopropionate (DMSP), but production and removal processes for these compounds are poorly characterized. Here we determined the concentrations and cycling of acrylate and DMSP in a transect from a coral reef ecosystem to the open ocean, 2 km beyond the reef i...
Supplementary Tables and Figures from:
Particulate and dissolved fluorescent organic matter fractionation and composition: abiotic and ecological controls in the Southern Ocean (2022)
Phytoplankton-derived organic matter sustains heterotrophic marine life in regions away from terrestrial inputs such as the Southern Ocean. Fluorescence spectroscopy has long been used to characterize the fluorescent organic matter (FOM) pool. However, most studies focus only in the dissolved FOM fraction (FDOM) disregarding the contribution of par...
Transparent exopolymer particles (TEP) and Coomassie stainable particles (CSP) are gel-like particles, ubiquitous in the ocean, that affect important biogeochemical processes including organic carbon cycling by planktonic food webs. Despite much research on both groups of particles (especially TEP) over many years, whether they exist as distinctly...
Algal blooms are hotspots of marine primary production and play central roles in microbial ecology and global nutrient cycling. When blooms collapse, organic carbon is transferred to higher trophic levels, microbial respiration or sinking in proportions that depend on the dominant mortality agent. Viral infection can lead to bloom termination, but...
COVID-19 has led to global population lockdowns that have had indirect effects on terrestrial and marine fauna, yet little is known on their effects on marine planktonic communities. We analysed the effect of the spring 2020 lockdown in a marine coastal area in Blanes Bay, NW Mediterranean. We compared a set of 23 oceanographic, microbial and bioge...
Algal blooms are hotspots of marine primary production and play central roles in microbial ecology and global nutrient cycling. When blooms collapse, organic carbon is transferred to higher trophic levels, microbial respiration or sinking in proportions that depend on the dominant mortality agent. Viral infection can lead to bloom termination, but...
Background
Microbial interactions are fundamental for Earth’s ecosystem functioning and biogeochemical cycling. Nevertheless, they are challenging to identify and remain barely known. Omics-based censuses are helpful in predicting microbial interactions through the statistical inference of single (static) association networks. Yet, microbial intera...
Particulate organic matter (POM) lability is one of the key factors determining the residence time of organic carbon (OC) in the marine system. Phytoplankton community composition can influence the rate at which heterotrophic microorganisms decompose phytoplankton detrital particles and thus, it controls the fraction of OC that reaches the ocean de...
Anthropogenic carbon emissions are causing changes in seawater carbonate chemistry including a decline in the pH of the oceans. While its aftermath for calcifying microbes has been widely studied, the effect of ocean acidification (OA) on marine viruses and their microbial hosts is controversial, and even more in combination with another anthropoge...
Microbial interactions are fundamental for Earth’s ecosystem functioning and biogeochemical cycling. Nevertheless, they are challenging to identify and remain barely known. The omics-based censuses are helpful to predict microbial interactions through the inference of static association networks. However, since microbial interactions are highly dyn...
The Variability of chlorophyll-specific phytoplankton light absorption [a*ph (λ)] was examined over depth and time in stratified offshore waters of the North-Western Mediterranean Sea. Coherent water patches were tracked with Lagrangian drifters during two oceanographic cruises in September (late summer) and May (post-spring bloom phase). By simult...
Estimation of prokaryotic growth rates is critical to understand the ecological role and contribution of different microbes to marine biogeochemical cycles. However, there is a general lack of knowledge on what factors control the growth rates of different prokaryotic groups and how these vary between sites and along seasons at a given site. We car...
Different factors affect the way dissolved organic matter (DOM) is processed in the ocean water column, including environmental conditions and the functional capabilities of the communities. Recent studies have shown that bathypelagic prokaryotes are metabolically flexible, but whether this versatility translates into a higher ability to process DO...
We explored how changes of viral abundance and community composition among four contrasting regions in the Southern Ocean relied on physicochemical and microbiological traits. During January–February 2015, we visited areas north and south of the South Orkney Islands (NSO and SSO) characterized by low temperature and salinity and high inorganic nutr...
Coastal marine ecosystems are strongly influenced by different occasional events, such as intense winds, mixing, rain and river discharges. These events can directly or indirectly cause changes in dissolved organic matter (DOM) quality through a cascade of different biotic and abiotic processes. The changes in DOM quality are often associated with...
This dataset, gathered during the RETRO-BMC cruise, reports multiple-scale measurements at the Confluence of the Brazil and Malvinas Currents. The cruise was carried out between 8 and 28 April 2017 onboard R/V Hespérides, departing from Ushuaia and arriving to Santos. Along its track, the vessel recorded near-surface temperature and salinity, as we...
The relationships between the structure of the phytoplankton community and the bio-optical properties of surface waters were studied during the TransPEGASO cruise along a transect across the Atlantic Ocean that covered seven biogeographical provinces, from the Alborán Sea (SW Mediterranean) to the Patagonian Shelf. We characterized the composition...
Biogenic Volatile Organic Compounds (VOCs) are essential constituents of marine ecosystems, where they are sources of atmospheric reactivity, indicators of the ecosystem state, and chemical cues for organism-organism communication. Most of VOCs result from photobiological and photochemical processes; however, their light-driven dynamics and short-t...
Biogenic Volatile Organic Compounds (VOCs) other than DMS are largely overlooked constituents of coral reef ecosystems. Even though they are sources of atmospheric reactivity and potential chemical cues for organism-organism communication, their production and cycling processes by the reef components are poorly constrained.
We measured VOCs in sea...
Experiments with bacteria in culture have shown that they often display “feast and famine” strategies that allow them to respond with fast growth upon pulses in resource availability, and enter a growth-arrest state when resources are limiting. Although feast responses have been observed in natural communities upon enrichment, it is unknown whether...
Organic pollutants are continuously being introduced in seawater with uncharacterized impacts on the engines of the marine biogeochemical cycles, the microorganisms. The effects on marine microbial communities were assessed for perfluoroalkyl substances, organophosphate esters flame retardants and plasticizers, polycyclic aromatic hydrocarbons, and...
Transparent Exopolymer Particles (TEPs) are a subclass of organic particles with high impact in biogeochemical and ecological processes, such as the biological carbon pump, air-sea interactions, or the microbial loop. However, the complexity in production and consumption makes TEP dynamics hardly predictable, calling for the need of descriptive stu...
Climate warming affects the development and distribution of sea ice, but at present the evidence of polar ecosystem feedbacks on climate through changes in the atmosphere is sparse. By means of synergistic atmospheric and oceanic measurements in the Southern Ocean near Antarctica, we present evidence that the microbiota of sea ice and sea ice-influ...
Marine biogeochemistry dynamics in coastal marine areas is strongly influenced by episodic events such as rain, intense winds, river discharges and anthropogenic activities. We evaluated in this study the importance of these forcing events on modulating seasonal changes in the marine biogeochemistry of the northwestern coast of the Mediterranean Se...
The bathypelagic ocean is one of the largest ecosystems on Earth, and sustains half of the ocean's microbial activity. This microbial activity strongly relies on surface-derived particles, but there is growing evidence that the carbon released through solubilisation of these particles may not be sufficient to meet the energy demands of deep ocean p...
In oligotrophic regions, such as the Mediterranean Sea, atmospheric deposition has the potential to stimulate heterotrophic prokaryote growth and production in surface waters, especially during the summer stratification period. Previous studies focused on the role of leaching nutrients from mineral particles of Saharan (S) origin, and were restrict...
Changes in the excitation (Ex)–emission (Em) matrixes of FDOM after the aerosol addition in the six experiments. The value of florescence before the addition in all the microcosm – expressed in quinine sulfate units (QSU) – is the same than in the C, whereas A and S matrixes show the values after the additions. The different peaks are indicated: Pe...
Aerosol-induced ratios (AIR) of the biogeochemical variables studied (abbreviations as in the main text). TREAT, TREATMENT (A = anthropogenic, S = Saharan); FILT, filtration (F = samples filtered by 0.8 μm; NF = not filtered); WI, winter; SP, spring; SU, summer; BCN, Barcelona; BLA, Blanes; OFF, offshore. A dash indicates that the ratio could not b...
The variability of a biogeochemical property in the ocean is the outcome of both nonconservative (such as respiration and photosynthesis) and conservative (mixing of water masses with distinct concentrations at origin) processes. One method to separate both contributions is based on a multiple regression of the biogeochemical property in terms of t...
Transparent Exopolymer Particles (TEP) are relevant in particle and carbon fluxes in the ocean, and have economic impact in the desalination industry affecting reverse osmosis membrane fouling. However, general models of their occurrence and dynamics are not yet possible because of the poorly known co-variations with other physical and biological v...
Bivariate plot between depth-averaged (upper mixed layer) temperature (abscises) and salinity (ordinates) in the 13 sampling stations along the diel cycle.
Variations of dissolved inorganic nitrogen (DIN, orange circles), dissolved inorganic phosphorus (DIP, green-yellow triangles), and estimated bacterial production with factor 1.55 kgC mol leucine (BP, purple triangles) in the coastal transects in May (A) and June (B).
The atmosphere of the northwestern (NW) Mediterranean Sea is affected by continuous inputs of anthropogenic aerosols and episodic Saharan dust events. These atmospheric inputs deliver to the surface waters high amounts of macronutrients and trace metals that can constitute their main source at certain times of the year. The effect of both anthropog...
Aeolian inputs of organic and inorganic nutrients to the ocean are important as they can enhance biological production in surface waters, especially in oligotrophic areas like the Mediterranean. The Mediterranean littoral is particularly exposed to both anthropogenic and Saharan aerosol depositions on a more or less regular basis. During the last f...
Photolysis is a major removal pathway for the biogenic gas dimethylsulfide (DMS) in the oceans’ surface. Here we tested the hypothesis that apparent quantum yields (AQY) for DMS photolysis varied according to the quantity and quality of its photosensitizers, chiefly chromophoric dissolved organic matter (CDOM) and nitrate. AQY compiled from the lit...
The Mediterranean Sea is a low-nutrient, low-chlorophyll region, characterized by a marine planktonic community limited predominantly by phosphorus (P), or P along with nitrogen (N) in the northwestern basin (NW). In this context, the deposition of nutrients from the atmosphere may play an important role, especially during the stratification period...
Samples from the MALASPINA circumnavigation expedition (2010-2011) were collected to study the influence of microbial abundances in the distribution of the fluorescent dissolved organic matter (FDOM). The FDOM excitation-emission matrix (EEM) data, obtained using a Fluoromax-4 spectrofluorimeter, were examined with Parallel Factor Analysis (PARAFAC...
Summary: We carried out monthly photosynthesis-irradiance (P-E) experiments with the 14C-method for 12 years (2003–2014) to determine the photosynthetic parameters and primary production of surface phytoplankton in the Blanes Bay Microbial Observatory, a coastal sampling station in the NW Mediterranean Sea. Our goal was to obtain seasonal trends an...
Plankton ecology has been the object of intense research and progress in the last few decades. This has been partly due to technological advances that have facilitated the multidisciplinary and high-resolution sampling of ecosystems and improved experimentation and analytical methodologies, and to sophisticated modelling. In addition, exceptional r...
The number of species of autotrophic communities can increase ecosystem productivity through species complementarity or through a selection effect which occurs when the biomass of the community approaches the monoculture biomass of the most productive species. Here we explore the effect of resource supply on marine primary productivity under the pr...
Two mesocosms experiments were conducted in winter 2010 and summer 2011 to examine how increased pCO2 and/or nutrient concentrations potentially perturbate dissolved organic matter dynamics in natural microbial assemblages. The fluorescence signals of protein- and humic-like compounds were used as a proxy for labile and non-labile material, respect...
Nature Communications 6:5986 doi: 10.1038/ncomms6986 (2015); Published January292015; Updated June152016 The original version of this Article failed to fully credit the use of the Ocean Data View software in figures 1, 2 and 3, which appears below: Schlitzer, R., Ocean Data View, http://odv.awi.de, 2016.
Fluorescent dissolved organic matter (FDOM) in open surface waters (< 200 m) of the Atlantic, Pacific, and Indian oceans was analysed by excitation-emission matrix (EEM) spectroscopy and parallel factor analysis (PARAFAC). A four-component PARAFAC model was fit to the EEMs, which included two humic- (C1 and C2) and two amino acid-like (C3 and C4) c...
Heterotrophic bacterial communities in marine environments are exposed to a heterogeneous mixture of dissolved organic compounds with different bioreactivity that may control both their activity and composition. The coastal environment is an example of a mixing area where recalcitrant allochthonous organic matter from rivers can encounter labile or...
We investigated the effects of an increase in dissolved CO2 on the microbial communities of the Mediterranean Sea during two mesocosm experiments in two contrasting seasons: winter, at the peak of the annual phytoplankton bloom, and summer, under lownutrient conditions. The experiments included treatments with acidification and nutrient addition, a...
Human-induced ocean acidification impacts marine life. Marine bacteria are major drivers of biogeochemical nutrient cycles and energy fluxes1; hence, understanding their performance under projected climate change scenarios is crucial for assessing ecosystem functioning. Whereas genetic and physiological responses of phytoplankton to ocean acidifica...
The refractory nature of marine dissolved organic matter (DOM) increases while it travels from surface waters to the deep ocean. This resistant fraction is in part composed of fluorescent humic-like material, which is relatively difficult to metabolize by deep water prokaryotes, and it can also be generated by microbial activity. It has been recent...