Carmen Bouza

Carmen Bouza
University of Santiago de Compostela | USC · Zoology, Genetics and Physic Anthropology

PhD

About

174
Publications
25,723
Reads
How we measure 'reads'
A 'read' is counted each time someone views a publication summary (such as the title, abstract, and list of authors), clicks on a figure, or views or downloads the full-text. Learn more
3,321
Citations

Publications

Publications (174)
Preprint
Full-text available
Embryogenesis is the crucial first step of ontogeny, where an organism with a complex body plan arises from a single undifferentiated totipotent cell. This process is orchestrated by dynamic changes in transcriptional regulation, influenced by chromatin accessibility and nucleotide and histone modifications constituting epigenetic signals enabling...
Article
Knowledge of genetic structure at the finest level is essential for the conservation of genetic resources. Despite no visible barriers limiting gene flow, significant genetic structure has been shown in marine species. The common cockle (Cerastoderma edule) is a bivalve of great commercial and ecological value inhabiting the Northeast Atlantic Ocea...
Article
Full-text available
Non-synonymous variation (NSV) of protein coding genes represents raw material for selection to improve adaptation to the diverse environmental scenarios in wild and livestock populations. Many aquatic species face variations in temperature, salinity and biological factors throughout their distribution range that is reflected by the presence of all...
Article
Full-text available
Iberian populations of Arnica montana L. (Asteraceae) represent a valuable resource both for conservation and pharmaceutical industry. Previous genetic analyses pointed out the presence of different genetic groups, but a wide region is still genetically unexplored. In order to fill this scientific gap, the present study analysed a wider sampling ar...
Article
Disease resilience is of utmost relevance for turbot aquaculture. Several infective diseases, covering a broad spectrum from viruses, bacteria to different parasites, have been identified by industry. Since they increase mortality rates, reduce feed conversion ratios and slow down growth rate, genetic breeding programs for increasing disease resili...
Article
Full-text available
Brown trout (Salmo trutta L.) populations have been restocked during recent decades to satisfy angling demand and counterbalance the decline of wild populations. Millions of fertile brown trout individuals were released into Mediterranean and Atlantic rivers from hatcheries with homogeneous central European stocks. Consequently, many native gene po...
Article
Full-text available
Abstract Knowledge on correlations between environmental factors and genome divergence between populations of marine species is crucial for sustainable management of fisheries and wild populations. The edible cockle (Cerastoderma edule) is a marine bivalve distributed along the Northeast Atlantic coast of Europe and is an important resource from bo...
Article
Full-text available
Background Understanding sex determination (SD) across taxa is a major challenge for evolutionary biology. The new genomic tools are paving the way to identify genomic features underlying SD in fish, a group frequently showing limited sex chromosome differentiation and high SD evolutionary turnover. Turbot (Scophthalmus maximus) is a commercially i...
Article
Full-text available
Background The irruption of Next-generation sequencing (NGS) and restriction site-associated DNA sequencing (RAD-seq) in the last decade has led to the identification of thousands of molecular markers and their genotyping for refined genomic screening. This approach has been especially useful for non-model organisms with limited genomic resources....
Article
The maintenance of biological diversity at ecosystem, species and intraspecific levels is essential to ensure the survival of forests. The palaeartic yew Taxus baccata is part of a number of threatened forest types with prioritized conservation value in Europe. We investigated the spatial distribution of microsatellite genetic diversity in forty-si...
Article
Full-text available
Background: Syngnathid fishes (Actinopterygii, Syngnathidae) are flagship species strongly associated with seaweed and seagrass habitats. Seahorses and pipefishes are highly vulnerable to anthropogenic and environmental disturbances, but most species are currently Data Deficient according to the IUCN (2019), requiring more biological and ecological...
Preprint
Full-text available
Knowledge on how environmental factors shape the genome of marine species is crucial for sustainable management of fisheries and wild populations. The edible cockle (Cerastoderma edule) is a marine bivalve distributed along the Northeast Atlantic coast of Europe and is an important resource from both commercial and ecological perspectives. We perfo...
Article
Full-text available
Background Syngnathid fishes (Actinopterygii, Syngnathidae) are flagship species strongly associated with seaweed and seagrass habitats. Seahorses and pipefishes are highly vulnerable to anthropogenic and environmental disturbances, but most species are currently Data Deficient according to the IUCN (2019), requiring more biological and ecological...
Preprint
Full-text available
Background: Syngnathid fishes (Actinopterygii, Syngnathidae) are flagship species strongly associated with seaweed and seagrass habitats. Seahorses and pipefishes are highly vulnerable to anthropogenic and environmental disturbances, but most species are currently Data Deficient according to the IUCN (IUCN, 2019), requiring more biological and ecol...
Preprint
Full-text available
Background The irruption of Next-generation sequencing (NGS) and restriction site-associated DNA sequencing (RAD-seq) in the last decade has led to the identification of thousands of molecular markers and their genotyping for refined genomic screening. This approach has been especially useful for non-model organisms with limited genomic resources....
Preprint
Full-text available
Background: The irruption of Next-generation sequencing (NGS) and restriction site-associated DNA sequencing (RAD-seq) in the last decade has led to the identification of thousands of molecular markers and their genotyping for refined genomic screening. This approach has been especially useful for non-model organisms with limited genomic resources....
Preprint
Full-text available
Background: Syngnathid fishes (Actinopterygii, Syngnathidae) are flagship species highly associated to seaweed and seagrass habitats of marine ecosystems biodiversity. Seahorses and pipefish are highly vulnerable to anthropogenic and environmental disturbances, but most species are currently Data Defficient by IUCN (IUCN, 2019), requiring more biol...
Preprint
Full-text available
Background: Syngnathid fishes (Actinopterygii, Syngnathidae) are flagship species strongly associated with seaweed and seagrass habitats. Seahorses and pipefishes are highly vulnerable to anthropogenic and environmental disturbances, but most species are currently Data Deficient according to the IUCN (IUCN, 2019), requiring more biological and ecol...
Article
Full-text available
Massive genotyping of single nucleotide polymorphisms (SNP) has opened opportunities for analyzing the way in which selection shapes genomes. Artificial or natural selection usually leaves genomic signatures associated with selective sweeps around the responsible locus. Strong selective sweeps are most often identified either by lower genetic diver...
Article
Full-text available
Arnica montana (Asteraceae) is a herbaceous species with high interest for pharmaceutical industry due its anti-inflammatory properties. However, commercial collection in wild, habitat loss, abandonment of land, reforestation and the ongoing climate change threaten the conservation of the species throughout its natural distribution. Galicia (north-...
Article
Full-text available
Rhamdia quelen, a Neotropical fish with hybridization between highly divergent mitochondrial DNA (mtDNA) lineages, represents an interesting evolutionary model. Previous studies suggested that there might be demographic differences between coastal lagoons and riverine environments, as well as divergent populations that could be reproductively isola...
Preprint
Full-text available
A major challenge in evolutionary biology is to find an explanation for the variation in sex-determining (SD) systems across taxa and to understand the mechanisms driving sex chromosome differentiation. We studied the turbot, holding a ZW/ZZ SD system and no sex chromosome heteromorphism, by combining classical genetics and genomics approaches to d...
Article
Full-text available
The Neotropical species complex Rhamdia quelen is composed of at least six mitochondrial lineages. Three of these occur in sympatry in several regional basins, which encompass La Plata basin, Patos-Merin basin system and the coastal lagoons draining to SW Atlantic Ocean. Based on both mitochondrial cytochrome b gene and 10 nuclear microsatellite lo...
Article
Full-text available
Diverging semi‐isolated lineages either meet in narrow clinal hybrid zones, or have a mosaic distribution associated with environmental variation. Intrinsic reproductive isolation is often emphasized in the former and local adaptation in the latter, although both reduce gene flow between groups. Rarely are these two patterns of spatial distribution...
Article
Full-text available
Brown trout (Salmo trutta L.) is an important resource both for conservation and recreational fisheries in Iberian Peninsula, but the species is threatened in Llobregat River, an important river drainage in Catalonia (NE Spain), due to the high anthropological influence. In order to ascertain the native genetic diversity, phylogenetic relationships...
Chapter
Turbot (Scophthalmus maximus) is a flatfish with increasing aquaculture value in Europe and China. This species shows extreme sexual growth dimorphism, with females growing faster and achieving sexual maturity later than males – hence the interest of industry in producing all‐female populations. Sex determination (SD) of turbot shows a major geneti...
Article
Full-text available
The impact of escapees from aquaculture is of general concern for the sustainability of natural resources. Turbot Scophthalmus maximus is a marine flatfish of great commercial value whose land-based aquaculture started approx. 40 yr ago; hence, a low impact of escapees is expected on wild populations. However, enhancement of wild stocks using farme...
Article
• Application of genomics tools for conservation purposes (i.e. conservation genomics) allows looking deep into the genetic structure and adaptations of populations and species in order to define management units, trace exploited stocks, and identification of species. • In this work, a double‐digestion restriction‐site‐associated DNA sequencing (dd...
Presentation
Full-text available
Ten sites (2- 20 m depth), along the West coast of Cíes Archipelago (Atlantic Islands National Park, NW Spain), were surveyed twice in spring and summer 2016 to study distribution, habitat, genetic diversity and stable isotope signatures of Syngnathids (seahorses and pipefishes), a Family of vulnerable fish species. Most bottoms were characterized...
Poster
Full-text available
Spanish National Parks (PNs), due to their ecological, educative and research value are areas of special interest for conservation issues. Currently, there are two different Marine National Parks in Spain (Islas Atlánticas, PNIA; Archipiélago de Cabrera, PNAC). The aim of the present study was the analysis of distribution, phylogenetic relationship...
Article
Full-text available
Highly dense linkage maps enable positioning thousands of landmarks useful for anchoring the whole genome and for analysing genome properties. Turbot is the most important cultured flatfish worldwide and breeding programs in the fifth generation of selection are targeted to improve growth rate, obtain disease resistant broodstock and understand sex...
Article
Turbot (Scophthalmus maximus) is a valuable flatfish with current selection programs to increase growth rate in the fifth generation. Disentangling the genetic architecture of growth traits has biological and productive relevance. Growth-related quantitative trait loci (QTL) and associated markers have been previously reported in turbot. Here, we t...
Article
Productivity traits, such as prolificacy, are of high importance in livestock species. These traits depend basically on many environmental and genetic factors. In sheep, some genes (mainly belonging to the transforming growth factor β genes superfamily) have an important effect on prolificacy, where the bone morphogenetic factor 15 (BMP15, also nam...
Preprint
Full-text available
Diverging semi-isolated lineages either meet in narrow clinal hybrid zones, or have a mosaic distribution associated with environmental variation. Intrinsic reproductive isolation is often emphasized in the former and local adaptation in the latter, although both can contribute to isolation. Rarely these two patterns of spatial distribution are rep...
Article
Full-text available
Unraveling adaptive genetic variation represents, in addition to the estimate of population demographic parameters, a cornerstone for the management of aquatic natural living resources, which in turn, represent the raw material for breeding programs. The turbot (Scophthalmus maximus) is a marine flatfish of high commercial value living on the Europ...
Article
1. Brown trout (Salmo trutta) is an important conservation resource in the Iberian Peninsula. The Atlantic is considered the most hydrologically stable region for the species, although inner Galicia (NW Spain) shows Mediterranean (unstable) climatic conditions. The Galician region, threatened by past releases of brown trout individuals from central...
Article
Repetitive DNA plays a fundamental role in the organization, size and evolution of eukaryotic genomes. The sequencing of the turbot revealed a small and compact genome, as in all flatfish studied to date. The assembly of repetitive regions is still incomplete because it is difficult to correctly identify their position, number and array. The combin...
Article
Full-text available
Growth is among the most important traits for animal breeding. Understanding the mechanisms underlying growth differences between individuals can contribute to improving growth rates through more efficient breeding schemes. Here, we report a transcriptomic study in muscle and brain of fast- and slow-growing turbot (Scophthalmus maximus), a relevant...
Article
Full-text available
The Neotropical catfish genus Rhamdia inhabits rivers and lakes from Mexico to Argentina. Previous studies have found that the taxonomy of this genus, as well as that of R. quelen, remains controversial. The present study aims to contribute to the understanding of Rhamdia systematics by delimiting putative species, and to elucidate the pattern of g...
Chapter
The turbot (Scophthalmus maximus) is a flatfish with an increasing aquaculture value. It shows one of the highest growth rates and sexual growth dimorphism among the cultured marine species. An important investment has been done on genomic research in this species for boosting breeding programs, currently in their fifth generation of selection. Rec...
Article
Flatfish have a high market acceptance thus representing a profitable aquaculture production. The main farmed species is the turbot (Scophthalmus maximus) followed by Japanese flounder (Paralichthys olivaceous) and tongue sole (Cynoglossus semilaevis), but other species like Atlantic halibut (Hippoglossus hippoglossus), Senegalese sole (Solea seneg...
Article
Full-text available
Doubly uniparental inheritance (DUI) of mitochondrial DNA (mtDNA) implies the coexistence of two highly divergent gender-associated mitogenomes, which are transmitted independently. This exception to the strictly maternal inheritance of mtDNA is characteristic of some bivalves and occurs in the endangered freshwater mussel Margaritifera margaritife...
Article
Full-text available
The turbot is a flatfish (Pleuronectiformes) with increasing commercial value, which has prompted active genomic research aimed at more efficient selection. Here we present the sequence and annotation of the turbot genome, which represents a milestone for both boosting breeding programmes and ascertaining the origin and diversification of flatfish....
Article
Full-text available
Growth traits represent a main goal in aquaculture breeding programs and may be related to adaptive variation in wild fisheries. Integrating quantitative trait loci (QTL) mapping and next generation sequencing can greatly help to identify variation in candidate genes, which can result in marker-assisted selection and better genetic structure inform...
Article
Full-text available
Morphometric and genetic analyses confirmed the first records of the West African seahorse Hippocampus algiricus at Gran Canaria Island (north-east Atlantic Ocean), and also the first evidence of interspecific hybridization in seahorses. These results provide additional data on the distribution of H. algiricus that may help to establish future cons...
Article
Full-text available
The threatened European species Arnica montana L. is a plant much appreciated in the pharmaceutical industry, Galicia (North-Western Spain) being one of the main supply regions. Two chemotypes based on the content of sesquiterpene lactones have been found in this area: a chemotype dominated by helenalins, common in Central Europe, and another domin...
Article
Full-text available
This study was focused on conservation genetics of threatened Hippocampus guttulatus on the Atlantic coast of NW Iberian Peninsula. Information about spatial structure and temporal stability of wild populations was obtained based on microsatellite markers, and used for monitoring a captive breeding program firstly initiated in this zone at the faci...