Carlos J. Melian

Eawag: Das Wasserforschungs-Institut des ETH-Bereichs | Eawag · Department of Fish Ecology and Evolution

The past decade has seen the rise of high resolution datasets. One of the main surprises of analysing such data has been the discovery of a large genetic, phenotypic and behavioural variation and heterogeneous metabolic rates among individuals within natural populations. A parallel discovery from theory and experiments has shown a strong temporal c...

Most empirical and theoretical studies have shown that sex increases the rate of evolution, although evidence of sex constraining genomic and epigenetic variation and slowing down evolution also exists. Faster rates with sex have been attributed to new gene combinations, removal of deleterious mutations, and adaptation to heterogeneous environments...

Numerous evolutionary studies have sought to explain the distribution of diversity across the limbs of the tree of life. At the same time, ecological studies have sought to explain differences in diversity and relative abundance within and among ecological communities. Traditionally, these patterns have been considered separately, but models that c...

The presence or absence of sex can have a strong influence on the processes whereby species arise. Yet, the mechanistic underpinnings of this influence are poorly understood. To gain insights into the mechanisms whereby the reproductive mode may influence ecological diversification, we investigate how natural selection, genetic mixing, and the repr...

Human societies depend on services provided by ecosystems, from local needs such as clean water and pest control to global services like the ozone layer and the ocean biological pump. Ecosystem services are linked to the states of the ecosystem, which are, in turn, governed by a web of ecological interactions. These interactions, along with the ser...

Understanding how biotic interactions shape ecosystems and impact their functioning, resilience and biodiversity has been a sustained research priority in ecology. Yet, traditional assessments of ecological complexity typically focus on species-species interactions that mediate a particular function (e.g., pollination), overlooking both the synergi...

Human societies depend on services provided by ecosystems, from local needs as clean water and pest control to global services like ozone layer and the ocean biological pump. Ecosystem services are intrinsically linked to the states of the ecosystem, which are, in turn, governed by a complex web of ecological interactions. These interactions and, c...

The presence or absence of sex can have a strong influence on the processes whereby species arise. Yet, the mechanistic underpinnings of this influence are poorly understood. To gain insights into the mechanisms whereby the reproductive mode may influence diversification, we investigate how natural selection, genetic mixing and the reproductive mod...

Understanding how biotic interactions affect ecosystem functioning has been a research priority in natural sciences due to their critical role in bolstering ecological resilience. Yet, traditional assessment of ecological complexity typically focus on species-species effective interactions that mediate a particular function (e.g. pollination or see...

Our understanding of food webs has greatly advanced during the last decade mostly fueled by a better integration and accuracy of the data. Connecting evolutionary to ecological processes in food webs remains challenging and requires the accommodation of different levels of biological organization, accounting for information processing traits, spati...

Biodiversity can increase in both high‐ and low‐connected landscapes. However, we lack predictions related to biodiversity dynamics when accounting for the temporal heterogeneity in the connections among the habitats of a landscape. Here, we study the relationship between fluctuations in landscape connectivity and biodiversity dynamics at local and...

Genotype-phenotype maps are usually complex. Studies connecting the mechanisms driving genome and phenome evolution have been done mostly in isolation. Because of the rarity of studies considering the mapping between the genotypes to phenotypes, simulations explicitly taking into account the complex genotype-phenotype architecture are incipient (Me...

Cross‐species communication, where signals are sent by one species and perceived by others, is one of the most intriguing types of communication that functionally links different species to form complex ecological networks. Global change and human activity can affect communication by increasing fluctuations in species composition and phenology, alt...

Cross-species communication, where signals are sent by one species and perceived by others, is one of the most intriguing types of communication that functionally links different species to form complex ecological networks. Yet, global changes and human activities can affect communication by increasing the fluctuations of species composition and ph...

Marine Protected Areas (MPAs) are an important tool for management and conservation and play an increasingly recognised role in societal and human well-being. However, the assessment of MPAs often lacks a simultaneous consideration of ecological and socio-economic outcomes, and this can lead to misconceptions on the effectiveness of MPAs. In this p...

The Spanish government declared the lockdown on March 14th, 2020 to tackle the fast-spreading of COVID-19. As a consequence, the Balearic Islands remained almost fully isolated due to the closing of airports and ports, these isolation measures and the home-based confinement have led to a low prevalence of COVID-19 in this region. We propose a compa...

Significance This research deals with the development of capacity-building through marine bioresearch from a scientific standpoint, particularly through a new approach based on publication and authorship metrics. By using a 50-y dataset on the discovery of marine natural products, this study draws verifiable conclusions on capacity-building, a proc...

The Spanish government declared the lockdown on March 14th, 2020 to tackle the fast-spreading of COVID-19. As a consequence the Balearic Islands remained almost fully isolated due to the closing of airports and ports, These isolation measures and the home-based confinement have led to a low incidence of COVID-19 in this region. We propose a compart...

According to the competitive exclusion principle, species with low competitive abilities should be excluded by more efficient competitors; yet, they generally remain as rare species. Here, we describe the positive and negative spatial association networks of 326 disparate assemblages, showing a general organization pattern that simultaneously suppo...

Background: Seasonal spatio-temporal variation in habitat quality and abiotic conditions leads to animals migrating between different environments around the world. Whereas mean population timing of migration is often fairly well understood, explanations for variation in migratory timing within populations are often lacking. Condition-dependent tr...

Explaining the mechanisms driving niche partitioning among species is of great importance in ecology. Unlike the fundamental niche, a species’ realised niche can only be measured in situ, as a result of biotic and abiotic interactions defining its size. Following current methodology, the realised niche of a species is often influenced by the rare a...

The persistence of ecological systems in changing environments requires energy, materials, and information. Although the importance of information to ecological function has been widely recognized, the fundamental principles of ecological science as commonly expressed do not reflect this central role of information processing. We articulate five fu...

Parasites can shape the structure and function of ecosystems by influencing both the density and traits of their hosts. Such changes in ecosystems are particularly likely when the host is a predator that mediates the dynamics of trophic cascades. Here, we experimentally tested how parasite load of a small predatory fish, the threespine stickleback,...

Species interactions lie at the heart of many theories of macroevolution, from adaptive radiation to the Red Queen. Although some theories describe the imprint that interactions will have over long time scales, we are still missing a comprehensive understanding of the effects of interactions on macroevolution. Current research shows strong evidence...

Theoretical models pertaining to feedbacks between ecological and evolutionary processes are prevalent in multiple biological fields. An integrative overview is currently lacking, due to little crosstalk between the fields and the use of different methodological approaches. Here, we review a wide range of models of eco‐evolutionary feedbacks and hi...

1. Theoretical models pertaining to feedbacks between ecological and evolutionary processes are prevalent in multiple biological fields. An integrative overview is currently lacking, due to little crosstalk between the fields and the use of different methodological approaches. 2. Here we review a wide range of models of eco-evolutionary feedbacks a...

Biological systems consist of elements that interact within and across hierarchical levels. For example, interactions among genes determine traits of individuals, competitive and cooperative interactions among individuals influence population dynamics, and interactions among species affect the dynamics of communities and ecosystem processes. Such s...

Studies have shown the potential for rapid adaptation in coevolving populations and that the structure of species interaction networks can modulate the vulnerability of ecological systems to perturbations. Although the feedback loop between population dynamics and coevolution of traits is crucial for understanding long-term stability in ecological...

Knowledge of species composition and their interactions, in the form of interaction networks, is required to understand processes shaping their distribution over time and space. As such, comparing ecological networks along environmental gradients represents a promising new research avenue to understand the organization of life. Variation in the pos...

For the past 20 years, research on biodiversity and ecosystem functioning (B-EF) has only implicitly considered the underlying role of environmental change. We illustrate that explicitly reintroducing environmental change drivers in B-EF research is needed to predict the functioning of ecosystems facing changes in biodiversity. Next we show how thi...

The Cretaceous breakup of Gondwana strongly modified the global distribution of shallow tropical seas reshaping the geographic configuration of marine basins. However, the links between tropical reef availability, plate tectonic processes and marine biodiversity distribution patterns are still unknown. Here, we show that a spatial diversification m...

Ecosystem responses to changes in species diversity are often studied individually. However, changes in species diversity can simultaneously influence multiple interdependent ecosystem functions. Therefore, an important challenge is to determine when and how changes in species diversity that influence one function will also drive changes in other f...

Dispersal and the underlying movement behaviour are processes of pivotal importance for understanding and predicting metapopulation and metacommunity dynamics. Generally, dispersal decisions are condition-dependent and rely on information in the broad sense, like the presence of conspecifics. However, studies on metacommunities that include intersp...

Predictions from theory, field data, and experiments have shown that high landscape connectivity promotes higher species richness than low connectivity. However, examples demonstrating high diversity in low connected landscapes also exist. Here we describe the many factors that drive landscape connectivity at different spatiotemporal scales by vary...

Populations of species typically considered trophic generalists may include specialised individuals consistently feeding on certain resources. Optimal foraging theory states that individuals should feed on those resources most valuable to them. This, however, may vary according to individual differences in detecting or processing resources, differe...

Dispersal, and the underlying movement behaviour, are processes of pivotal importance for understanding and predicting metapopulation and metacommunity dynamics. Generally, dispersal decisions are non-random and rely on information, such as the presence of conspecifics. However, studies on metacommunities that include interspecific interactions gen...

The determinants that shape the distribution of diversity of life on Earth have been long discussed and many mechanisms underlying its formation have been proposed. Yet connecting the biogeography of hot and cold spots of diversification and current biodiversity patterns to the microevolutionary processes remains largely unexplored. Here, we combine...

Abstract Studies of food webs suggest that limited nonrandom dispersal can play an important role in structuring food webs. It is not clear, however, whether density-dependent dispersal fits empirical patterns of food webs better than density-independent dispersal. Here, we study a spatially distributed food web, using a series of population-disper...

One of the current challenges in evolutionary ecology is understanding the long-term persistence of contemporary-evolving predator–prey interactions across space and time. To address this, we developed an extension of a multi-locus, multi-trait ecoevolutionary individual-based model that incorporates several interacting species in explicit landscap...

In recent years, there has been a renewed interest in the ecological consequences of individual trait variation within populations. Given that individual variability arises from evolutionary dynamics, to fully understand eco-evolutionary feedback loops, we need to pay special attention to how standing trait variability affects ecological dynamics....

Background/Question/Methods Fast worldwide biodiversity decline has propelled research on its potential environmental and biotic causes. However, most biodiversity studies focus on the influence of one single driver, while ecosystems are exposed to a multitude of potential biodiversity drivers. We define two types of potential biodiversity driv...

Plant-animal mutualistic networks are highly diverse and structured. This has been explained by coevolution through niche based processes. However, this explanation is only warranted if neutral processes (e.g. limited dispersal, genetic and ecological drift) cannot explain these patterns. Here we present a spatially explicit model based on explicit...

The worldwide distribution of toxicants is an important yet understudied driver of biodiversity, and the mechanisms relating toxicity to diversity have not been adequately explored. Here, we present a community model integrating demography, dispersal and toxicant-induced effects on reproduction driven by intraspecific and interspecific variability...

The worldwide distribution of toxicants is an important yet understudied driver of biodiversity, and the mechanisms relating toxicity to diversity have not been adequately explored. Here, we present a community model integrating demography, dispersal and toxicant-induced effects on reproduction driven by intraspecific and interspecific variability...

Over-extraction of marine resources, habitat destruction, water quality, climate change and invasive species are now threatening the marine biota and marine ecosystems worldwide. This chapter reviews the risk and extent of biological extinctions in the sea - a subject fraught with challenges. As a start, species long thought extinct are re-discover...

Biodiversity theories neglect individual-level variability in ecological interactions even though empirical work has revealed considerable genetic and phenotypic variation among individuals in natural populations. This impedes assessing the impact of individual-level variability on biodiversity in multi-trophic ecosystems. Here we use a density-dep...

Background/Question/Methods Empirical and theoretical studies on the origins of radiations have shown the role of genetic, sexual, ecological and geographical processes. Most empirical data suggest ecological speciation driven by adaptations to niches as the dominant force triggering radiations. There is, however, still a lack of theory (1) infer...

Frequency-dependent selection predicts patterns of radiations and biodiversity. (0.22 MB PDF)

Most empirical studies support a decline in speciation rates through time, although evidence for constant speciation rates also exists. Declining rates have been explained by invoking pre-existing niches, whereas constant rates have been attributed to non-adaptive processes such as sexual selection and mutation. Trends in speciation rate and the pr...

Ecological networks are typically complex constructions of species and their interactions. During the last decade, the study of networks has moved from static to dynamic analyses, and has attained a deeper insight into their internal structure, heterogeneity, and temporal and spatial resolution. Here, we review, discuss and suggest research lines i...

Most empirical studies support a decline in speciation rates through time, although evidence for constant speciation rates also exists. Declining rates have been explained by invoking niche-filling processes, whereas constant rates have been attributed to non-adaptive processes such as sexual selection, mutation, and dispersal. Trends in speciation...

Ecological network patterns are influenced by diverse processes that operate at different temporal rates. Here we analyzed whether the coupled effect of local abundance variation, seasonally phenotypic plastic responses, and species evolutionary adaptations might act in concert to shape network patterns. We studied the temporal variation in three i...

Most studies on ecological networks consider only a single interaction type (e.g. competitive, predatory or mutualistic), and try to developrules for system stability based exclusively on properties of this interaction type. However, the stability of ecological networks may be more dependent on the way different interaction types are combined in re...

The origin of diversification and coexistence of genes and species have been traditionally studied in isolated biological levels. Ecological and evolutionary views have focused on the mechanisms that enable or constrain species coexistence, genetic variation and the genetics of speciation, but a unified theory linking those approaches is still miss...

The strength of interactions among species in a network tends to be highly asymmetric. We evaluate the hypothesis that this asymmetry results from the distribution of abundance among species, so that species interactions occur randomly among individuals. We used a database on mutualistic and antagonistic bipartite quantitative interaction networks....

In this paper, we compile the network of software packages with regulatory interactions (dependences and conflicts) from Debian GNU/Linux operating system and use it as an analogy for a gene regulatory network. Using a trace-back algorithm we assemble networks from the pool of packages with both scale-free (real data) and exponential (null model) t...

Spatio-temporal patterns of predator aggregations within their settlement areas (i.e. temporary settling zones used during dispersal or, more generally, foraging patches) were studied. By integrating the main behavioural rules of juveniles of Spanish imperial eagles Aquila adalberti during dispersal with the temporal availability of the eagles’ mai...

This chapter argues that two major deficiencies of food web theory to date are the almost mutually exclusive treatment of detail and resolution in food web models and the lack of tangible timescales in mapping theory to empirical research on food webs. It highlights some recent advances in food web theory that represent the first steps towards inte...

There are two common approaches to food webs. On the one hand, empirical studies have described aggregate statistical measures of many-species food webs. On the other hand, theoretical studies have explored the dynamic properties of simple tri-trophic food chains (i.e., trophic modules). The question remains to what extent results based on simple m...

The stability of ecological communities largely depends on the strength of interactions between predators and their prey. Here we show that these interaction strengths are structured nonrandomly in a large Caribbean marine food web. Specifically, the cooccurrence of strong interactions on two consecutive levels of food chains occurs less frequently...

Trophic interactions, as many other relevant ecological processes, are spatially extended. Previous work has pointed out the importance of the spatial domain for understanding food webs. This chapter builds on this body of work by considering how space shapes food web structure. It considers two case studies. First, it studies whether the global st...

Network of packages with regulatory interactions (dependences and conflicts) from Debian GNU/Linux operating system is compiled and used as analogy of a gene regulatory network. Using a trace-back algorithm we assembly networks from the potential pool of packages for both scale-free and exponential topology from real and a null model data, respecti...

MAGINEMOS UNA ISLA vacía. Por ejemplo, una de las islas Canarias una vez emergida desde el fondo oceánico por sucesivas erupciones volcánicas. En este instante, la isla sería una roca humeante donde la vida aún no ha llegado. Dicho estado es imposible de mantener por mucho tiempo. En algún momento de su historia geológica, individuos de cualquier e...

Both dynamic and topologic approaches in food webs have shown how structure alters conditions for stability. However, while most studies concerning the structure of food webs have shown a nonrandom pattern, it still remains unclear how this structure is related to compartmentalization and to responses to perturbations. Here we build a bridge betwee...

Most studies of plant-animal mutualisms involve a small number of species. There is almost no information on the structural organization of species-rich mutualistic networks despite its potential importance for the maintenance of diversity. Here we analyze 52 mutualistic networks and show that they are highly nested; that is, the more specialist sp...

Recent studies of biological networks have focused on the distribution of the number of links per node. However, the connectivity distribution does not uncover all the complexity of their topology. Here, we analyse the relation between the connectivity of a species and the average connectivity of its nearest neighbours in three of the most resolved...

In this paper we explore simple food web models to study how metacommunity structure affects species response to habitat loss. We find that patch abundances and extinction thresholds vary according to the kind of food web. Second, for intermediate species, a slight decrease in the exploration cost of the better competitor has a strong effect on the...