Carlos Carreras

• PhD
• Lecturer at University of Barcelona

In response to global climate change, numerous taxa are expanding their living ranges. In highly migratory species such as sea turtles, this expansion may be driven by individuals from nearby or distant areas. Recent nests outside the species' typical nesting range and reports of adult‐sized individuals in the western Mediterranean suggest a green...

Assessing conservation status and pursuing applicable management priorities for marine megafauna across multiple scales pose significant challenges. Because marine turtles exemplify these challenges, the IUCN Marine Turtle Specialist Group (MTSG) developed the ‘conservation priorities portfolio’ (CPP) framework in 2011 to evaluate population risk a...

Diplodus puntazzo is a demersal fish inhabiting the Mediterranean Sea and the eastern Atlantic and plays an important ecological role in coastal areas. Here, we present the first nuclear genome assembly and annotation of this species and genus. We used a combination of PacBio CLR long reads, Illumina short reads and chromatin capture reads (Omni-C)...

Allochrony is a form of reproductive isolation characterized by differences in the timing of spawning and may play a crucial role in the genetic and phenotypic divergence within species. The Atlantic lumpfish (Cyclopterus lumpus) is known to spawn in spring and autumn. However, the role of allochrony on the genomic structure of this species has not...

It is widely recognized that the examination of haplotypes among sea turtles inhabiting nesting beaches holds significant importance. Yet, an effective conservation effort of a population also requires an investigation of the origin of sea turtles that strand on the shore, especially as many of these result from interactions with fisheries. In cons...

Invasive species are one of the main threats to global biodiversity and, within marine ecosystems, tunicates feature some prominent examples. Styela plicata is an ascidian species inhabiting harbours in all temperate oceans and seas, thus being considered a thriving invasive species. However, this species' adaptive mechanisms, introduction history,...

The Catalan Initiative for the Earth BioGenome Project (CBP) is an EBP-affiliated project network aimed at sequencing the genome of the >40 000 eukaryotic species estimated to live in the Catalan-speaking territories (Catalan Linguistic Area, CLA). These territories represent a biodiversity hotspot. While covering less than 1% of Europe, they are h...

The black sea urchin (Arbacia lixula) is a keystone species inhabiting the coastal shallow waters of the Mediterranean Sea, which is a key driver of littoral communities' structure. Here, we present the first genome assembly and annotation of this species, standing as the first Arbacioida genome, including both nuclear and mitochondrial genomes. To...

Background Genomic architecture is a key evolutionary trait for living organisms. Due to multiple complex adaptive and neutral forces which impose evolutionary pressures on genomes, there is a huge variability of genomic features. However, their variability and the extent to which genomic content determines the distribution of recovered loci in red...

Biological invasions are a major threat to biodiversity. Therefore, monitoring genomic features of invasive species is crucial to understand their population structure and adaptive processes. However, genomic resources of invasive species are scarce, compromising the study of their invasive success. Here, we present the reference genome of Styela p...

The loggerhead sea turtle (Caretta caretta) is sensitive to climate change and is responding by colonising the Western Mediterranean. To understand the rapid nesting increase in recent years in Spain, we sampled 45 hatchlings from 8 nests between 2016 and 2019. We sequenced a mtDNA D‐loop region, genotyped 2291 SNPs using 2bRAD and collected data o...

Conservation genomic studies in non‐model organisms generally rely on reduced representation sequencing techniques based on restriction enzymes to identify population structure as well as candidate loci for local adaptation. While the expectation is that the reduced representation of the genome is randomly distributed, the proportion of the genome...

Animals, including invasive species, are complex entities consisting of a host and its associated symbionts (holobiont). The interaction between the holobiont components is crucial for the host’s survival. However, our understanding of how microbiomes of invasive species change across different tissues, localities, and ontogenetic stages, is limite...

Genomic architecture is a key evolutionary trait for living organisms. Due to multiple complex adaptive and neutral forces which impose evolutionary pressures on genomes, there is a huge disparity of genomic features. However, existing genome architecture studies are taxon biased, and thus a wider picture should be obtained by expanding the taxonom...

Background Animals should be viewed as holobionts, complex entities composed of an animal host and their associated symbionts. This integrated perspective recognizes that the interaction between these two components is vital for the survival of the host. This synergy can be particularly relevant in the case of invasive species, as they constantly f...

Population genomic studies have increased in the last decade, showing great potential to understand the evolutionary patterns in a great variety of organisms, mostly relying on RAD sequencing techniques to obtain reduced representations of the genomes. Among them, 2b-RAD can provide further secondary reduction to adjust experimental costs by using...

Conservation genomic studies in non-model organisms generally rely on genome reduction techniques based on restriction enzymes to identify population structure as well as candidate loci for local adaptation. These reduced libraries ensure a high density of SNP loci and high coverage for accurate genotyping. Despite the fraction of the genome that i...

Mortality at early life stages of fishes is common in nature and can be shaped by stochastic and selective processes. Selective mortality has rarely been assessed in natural conditions but can now be studied by combining genomic data with information on different life stages that realates to fitness. Here we investigate selective mortality between...

Population genomic studies are increasing in the last decade, showing great potential to understand the evolutionary patterns in a great variety of organisms, mostly relying on RAD sequencing techniques to obtain reduced representations of the genomes. Among them, 2b-RAD can provide further secondary reduction to adjust study costs by using base-se...

The Mediterranean green turtle regional management unit is one of the 17 management units of green turtles considered a global conservation priority. However, previous studies using different genetic markers revealed very little diversity and differentiation across populations due to the overdominance of one haplotype (CM-A13) in the Mediterranean....

Global warming is affecting habitat quality and availability on our planet and some species are predicted or are by now changing their distribution range. Here we show that loggerhead turtles have already started to expand their nesting range into the Western Mediterranean, which has until recently hosted only sporadic nests. We compiled informatio...

Due to changing environmental conditions, many species will have to migrate or occupy new suitable areas to avoid potential extinction in the current biodiversity crisis. Long-lived animals are especially vulnerable and ex-situ conservation actions can provide solutions through assisted colonisations. However, there is little empirical evidence on...

RAD-seq methods allow to reduce the fraction of genome analysed in population genomic studies, solving efficiently the economical and informational trade-off. 2b-RAD sequencing has interesting characteristics such as the possibility to perform secondary genomic reductions using base-selective adaptors. Nevertheless, the efficiency of the different...

Progress in genome sequencing now enables the large-scale generation of reference genomes. Various international initiatives aim to generate reference genomes representing global biodiversity. These genomes provide unique insights into genomic diversity and architecture, thereby enabling comprehensive analyses of population and functional genomics,...

Global environmental changes may have a profound impact on ecosystems. In this context, it is crucial to gather biological and ecological information of the main species in marine communities to predict and mitigate potential effects of shifts in their distribution, abundance, and interactions. Using genotyping by sequencing (GBS), we assessed the...

Dispersal is a key process shaping species population structure. In demersal marine fishes, which usually have sedentary adult phases, dispersion relies on drifting larval stages. However, the dynamics and seasonal variability of seawater masses can greatly determine the connectivity patterns of these species along the same geographic gradient. For...

The document updates the knowledge on observations and incidences, including fishing bycatch, as well as other relevant information on projects and conservation of marine turtles carried out in the Spanish Mediterranean area, as part of the global Mediterranean region marine turtles assessment.

When starting to work on population genomics with a new species it is important to refine protocols in order to optimize economic resources without compromising the quality of the generated data. This poster presents a workflow to optimize 2b-RAD protocols by performing previous “in-silico” and posterior “in-vivo” digestions of the enzymes AlfI, Cs...

An amendment to this paper has been published and can be accessed via a link at the top of the paper.

Connectivity and local adaptation are two contrasting evolutionary forces highly influencing population structure. To evaluate the impact of early-life traits and environmental conditions on genetic structuring and adaptation, we studied two sympatric fish species in the Western Mediterranean Sea: Symphodus tinca and S. ocellatus. We followed an in...

When starting to work on population genomics with a new species it is important to refine protocols to optimize economic resources without compromising the quality of the data generated. Considering the variety of 2b-RAD enzymes and the diversity of genome sizes, it is desirable to assess general patterns of loci abundance and loci uniqueness to pr...

High‐throughput sequencing has revolutionized population and conservation genetics. RAD sequencing methods, such as 2b‐RAD, can be used on species lacking a reference genome. However, transferring protocols across taxa can potentially lead to poor results. We tested two different IIB enzymes (AlfI and CspCI) on two species with different genome siz...

Heteroplasmy is the existence of more than one mitochondrial DNA (mtDNA) variant within a cell. The evolutionary mechanisms of heteroplasmy are not fully understood, despite being a very common phenomenon. Here we combined heteroplasmy measurements using high throughput sequencing on green turtles (Chelonia mydas) with simulations to understand how...

Aim The Atlanto‐Mediterranean edible purple sea urchin, Paracentrotus lividus, is a commercially exploited keystone species in benthic communities. Its browsing activity can deeply modify the littoral landscape, and changes in its abundance are of major conservation concern. This species is facing nowadays contrasting anthropogenic pressures linked...

SWOT Report XIV features an up-to-date, comprehensive map of sea turtle distribution in the Mediterranean, a picture of loggerhead movements in the Atlantic, and expert answers to the most frequently asked questions about sea turtles. Other articles explore the effects of red tides on turtles, best practices for transporting stranded turtles, and...

Ex situ management is an important conservation tool that allows the preservation of biological diversity outside natural habitats while supporting survival in the wild. Captive breeding followed by re‐introduction is a possible approach for endangered species conservation and preservation of genetic variability. The Cayman Turtle Centre Ltd was es...

The Marine Turtle Specialist Groups Regional Reporting initiative aims to gather information from all all Regional Management Units (RMUs) updating on the current status and knowledge for all sea turtle populations (RMUs) in such a manner that it is presented in a standardized form and made available to the public. In the case of the Mediterranean...

Twenty-five years ago, the Union of Concerned Scientists and more than 1700 independent scientists, including the majority of living Nobel laureates in the sciences, penned the 1992 “World Scientists’ Warning to Humanity” (see supplemental file S1). These concerned professionals called on humankind to curtail environmental destruction and cautioned...

The available information regarding the 2 sea turtle species breeding in the Mediter-ranean (loggerhead turtle Caretta caretta and green turtle Chelonia mydas) is reviewed, including biometrics and morphology, identification of breeding and foraging areas, ecology and behaviour, abundance and trends, population structure and dynamics, anthropogenic...

The available information regarding the 2 sea turtle species breeding in the Mediterranean (loggerhead turtle Caretta caretta and green turtle Chelonia mydas) is reviewed, including biometrics and morphology, identification of breeding and foraging areas, ecology and behaviour, abundance and trends, population structure and dynamics, anthropogenic...

ABSTRACT: The available information regarding the 2 sea turtle species breeding in the Mediterranean (loggerhead turtle Caretta caretta and green turtle Chelonia mydas) is reviewed, including biometrics and morphology, identification of breeding and foraging areas, ecology and behaviour, abundance and trends, population structure and dynamics, anth...

Understanding the connectivity among populations is a key research priority for species of conservation concern. Genetic tools are widely used for this purpose, but the results can be limited by the resolution of the genetic markers in relation to the species and geographic scale. Here, we investigated natal philopatry in green turtles (Chelonia my...

1.-The assessment of the composition and dynamics of endangered populations is crucial for management and conservation, and appropriate genetic markers are critical. 2.-The genetic structuring of the Mediterranean green turtle (Chelonia mydas) populations and the origin of the stranded animals found along the Israeli coast was investigated using ne...

A correction to this article has been published and is linked from the HTML and PDF versions of this paper. The error has been fixed in the paper.

The colonisation of new suitable habitats is crucial for species survival at evolutionary scale under changing environmental conditions. However, colonisation potential may be limited by philopatry that facilitates exploiting successful habitats across generations. We examine the mechanisms of long distance dispersal of the philopatric loggerhead s...

The eastern Mediterranean Sea is frequently visited by nesting and foraging loggerhead turtles and is also a nursery zone although the origin of these foraging animals has not yet been assessed. In order to estimate the natal origin of eastern Turkey foraging individuals we analysed a long fragment of the mtDNA control region from 135 loggerhead tu...

Identifying links between breeding and non-breeding sites in migratory animals is an important step in understanding their ecology. Recognising the relative importance of foraging areas and ascertaining site-specific levels of recruitment can provide fundamental and applied insights. Here, satellite telemetry and the stable isotope ratios (δ¹³C, δ¹...

This volume contains the main results of the EC FP7 “The Ocean of Tomorrow” Project CoCoNet, divided in two sections: 1) a set of guidelines to design networks of Marine Protected Areas in the Mediterranean and the Black Seas; 2) a smart wind chart that will allow evaluating the possibility of installing Offshore Wind Farms in both seas. The concep...

Marine turtles are highly migratory species that establish multiple connections among distant areas, through oceanic migration corridors. To improve the knowledge on the connectivity of Atlantic green turtles Chelonia mydas, we analysed the genetic composition and contribution to juvenile aggregations of one of the world's largest rookeries at Poil...

The assessment of the genetic structuring of biodiversity is crucial for management and conservation. For species with large effective population sizes a low number of markers may fail to identify population structure. A solution of this shortcoming can be high-throughput sequencing that allows genotyping thousands of markers on a genome-wide appro...

Many marine megavertebrate taxa, including sea turtles, disperse widely from their hatching or birthing locations but display natal homing as adults. We used flipper tagging, satellite tracking and genetics to identify the origin of loggerhead turtles living in Amvrakikos Gulf, Greece. This location has been identified as hosting regionally importa...

Marine turtles have been traditionally considered model organisms to study sexbiased behaviour and dispersal. Although female philopatry has been identified in the loggerhead turtle, with adult females returning to specific locations to nest, studies on the philopatry and breeding migrations of males remain limited. In this study we analysed 152 ha...

In 2010, an international group of 35 sea turtle researchers refined an initial list of more than 200 research questions into 20 metaquestions that were considered key for management and conservation of sea turtles. These were classified under 5 categories: reproductive biology , biogeography, population ecology, threats and conservation strategies...

The sea and the beaches are warming worldwide causing diverse impacts on sea turtle populations. In terms of reproduction, adults can develop sperm and eggs at higher latitudes and hatchling feminization is already threatening the most important rookeries in tropical and subtropical areas. Sea turtles can respond to these environmental changes by d...

Bycatch is one of the main threats affecting marine megafauna worldwide, not only because of its prevalence, but also because the impact of high levels of bycatch in small oceanic regions may spread over whole oceans due to the complex dispersal patterns of bycaught species. Here, we use intrinsic and genetic markers to understand the impact of byc...

We report the first confirmed occurrence of a Lepidochelys olivacea in the Mediterranean Sea based on the study of an individual stranded on a beach in May 2014 in the town of Oropesa del Mar (40º05ʹ32ʺN, 0º08ʹ02ʺE), province of Castellón, East Spain. Morphological and genetic analyses were used to confirm species identification. The individual had...

The olive ridley sea turtle (Lepidochelys olivacea) is considered the most abundant sea turtle species in the world. The species has a circumtropical distribution, occurring regularly in the Pacific and Indian oceans and less frequently in the South Atlantic. Data on olive ridleys in the eastern Atlantic are sparse with main nesting areas located t...

Loggerhead turtles nesting in the Mediterranean Sea exhibit remarkable genetic structuring. This paper tests the hypothesis that young loggerhead turtles from different rookeries do not distribute homogeneously among the major Mediterranean foraging grounds, due to a complex pattern of surface currents. We extracted long fragments of mitochondrial...

Genetic markers have been widely used in marine turtles to assess population structuring and origin of individuals in common feeding grounds, which are key elements for understanding their ecology and for developing conservation strategies. However, these analyses are very sensitive to missing information, especially from abundant nesting sites. Ky...

The presence of the green and Kemp’s ridley turtles is rare at Atlantic and Mediterranean Spanish waters, but the records have increased during the last decades.We reported a new set of records and reviewed all the historical observations of these species. The analysis of a mitochondrial DNA fragment of the newest records provided insights about th...