Burton K Lim

Royal Ontario Museum · Department of Natural History

Studies of evolution and biodiversity require solid understanding of species systematics revealed by molecular phylogeny using multilocus genomic data. Multilocus analyses, nevertheless, remain difficult in non-model taxa due to limited access to samples and molecular resources. To help overcome this limitation, ultra-conserved elements (UCEs) have...

Knowledge of genetic diversity and structure is essential for developing conservation strategies for endangered species. Blue whales were hunted to near extinction in the mid-twentieth century. Not-withstanding almost 380,000 animals killed globally, much remains unknown about their population structure and migration patterns. Herein, we use whole...

The nectar-feeding bats of the genus Anoura are widely distributed in the Neotropics, but are most speciose in the Andes. Anoura cultrata is a rare mid-elevation bat occurring in South and Central America. It is thought to be one of the few bat species exemplifying a latitudinal cline in body size. We address three systematic and biogeographic ques...

Owing to the neglect of characters useful for species identification, the taxonomy of the bats of the genus Anoura is contentious. We provide annotated photographs of the skulls, study skins, and live bats of several species of Anoura in which useful characters can be visualized.

Chromosomal variation among closely related taxa is common in both plants and animals, and can reduce rates of introgression as well as promote reproductive isolation and speciation. In mammals, studies relating introgression to chromosomal variation have tended to focus on a few model systems and typically characterized levels of introgression usi...

Bats carry viruses that can cause severe disease in other mammals. Asymptomatic infections in bats suggest limited tissue-damaging inflammation and immunopathology. To investigate the genomic basis of disease resistance, the Bat1K project generated reference-quality genomes of ten bat species. A systematic analysis showed that signatures of selecti...

Plant–animal interactions constitute some of the most important ecological processes for the maintenance of tropical forests. Bats are the only group of mammals capable of true flight and have been recognized as important dispersers of pioneer and secondary successional plant species. Although progress has been made in the study of Neotropical bats...

Brock Fenton has devoted his career to the study of the ecological adaptations of bats and their diversity. In this paper, we describe his interest and research on the subject of bat evolution and how he has used phylogenetic hypotheses to revise our understanding of divergences and convergences of specific traits within this mammalian order. While...

Most ecological studies of chiropteran diets report that phyllostomid bats of the subfamilies Stenodermatinae, Carolliinae, and Rhinophyllinae feed principally on fruits. Nevertheless, under certain circumstances, some species can consume a considerable amount of other food resources (nectar/pollen, leaves, and arthropods) as dietary complements to...

A glande peniana e as estruturas associadas ao trato reprodutivo masculino estão entre as estruturas morfológicas mais complexas, diversificadas e de rápida evolução em muitos grupos de mamíferos, exibindo diferenças consideráveis mesmo entre espécies intimamente relacionadas. A conspícua variabilidade interespecífica da genitália dos mamíferos vem...

Highly specialized myrmecophagy (ant- and termite-eating) has independently evolved multiple times in species of various mammalian orders and represents a textbook example of phenotypic evolutionary convergence. We explored the mechanisms involved in this unique dietary adaptation and convergence through multi-omic analyses, including analyses of h...

The past two years of the COVID-19 pandemic has taught us a lot about emerging diseases, but also transmission of infections and ways of preventing future outbreaks from spreading globally. However, there is still much to be learned, such as how the culprit coronavirus SARS-CoV-2 mutates into different variants, what is the intermediate host that a...

Vampire bats are the only mammals that feed exclusively on blood. To uncover genomic changes associated with this dietary adaptation, we generated a haplotype-resolved genome of the common vampire bat and screened 27 bat species for genes that were specifically lost in the vampire bat lineage. We found previously unknown gene losses that relate to...

Aim: Comprehensive, global information on species' occurrences is an essential biodiversity variable and central to a range of applications in ecology, evolution, biogeography and conservation. Expert range maps often represent a species' only available distributional information and play an increasing role in conservation assessments and macroeco...

Bats have been considered non-sexually dimorphic in most species due to the lack of conspicuous body size differences between sexes, but other traits may offer unequivocal evidence of sexual dimorphism and can likely play critical roles in reproduction. Almost 150 years ago, an unusual fleshy structure on the chest was discovered in an adult male l...

Feeding exclusively on blood, vampire bats represent the only obligate sanguivorous lineage among mammals. To uncover genomic changes associated with adaptations to this unique dietary specialization, we generated a new haplotype-resolved reference-quality genome of the common vampire bat (Desmodus rotundus) and screened 26 bat species for genes th...

The study of human relationships with other components of the landscape allows us to understand the dynamics of ecological communities and biodiversity. Although there has been an increase in ethnobiological studies, little is known about the interaction between humans and bats. The objective of this study was to evaluate the perceptions and attitu...

In Neotropical bats, studies on bite force have focused mainly on differences in trophic ecology, and little is known about whether factors other than body size generate interspecific differences in bite force amongst insectivorous bats and, consequently, in their diets. We tested if bite force is related to skull morphology and also to diet in an...

• Bats in the family Phyllostomidae exhibit great diversity in skull size and morphology that reflects the degree of resource division and ecological overlap in the group. In particular, the subfamily Stenodermatinae has high morphological diversification associated with cranial and mandibular traits that are associated with the ability to consume...

In most vertebrates, the demand for glucose as the primary substrate for cellular respiration is met by the breakdown of complex carbohydrates, or energy is obtained by protein and lipid catabolism. In contrast, a few bat and bird species have convergently evolved to subsist on nectar, a sugar-rich mixture of glucose, fructose, and sucrose.1-4 How...

The taxonomic history of bats of the tribe Lasiurini (Chiroptera: Vespertilionidae) has undergone significant changes over time. Authors at different times have recognized various numbers of genera and subgenera within the tribe. The most recent proposed change to generic level taxonomy (that there should be three genera recognized instead of a sin...

Bats play crucial ecosystem services as seed dispersers, pollinators, controllers of insect, and nutrient recyclers. However, there has not been a thorough global review evaluating these roles in bats across all biogeographical regions of the world. We reviewed the literature published during the last two decades and identified 283 relevant studies...

Knowledge of genetic diversity and structure is essential for developing conservation strategies for endangered species. The advances in museum genomics can assist in better understanding the effects of over-hunting on the genome by comparing historical to present-day samples. Blue whales were hunted to the point of near extinction in the mid-twent...

Aim Bats are the only group of mammals with extant native species present throughout the islands of the Antilles, Central America, and South America. Here, we test competing hypotheses of species diversification in mastiff bats and deepen our understanding of the dominant biogeographical processes involved in evolution and distribution in the Neotr...

The family Pteropodidae (Old World fruit bats) comprises >200 species distributed across the Old World tropics and subtropics. Most pteropodids feed on fruit, suggesting an early origin of frugivory, although several lineages have shifted to nectar-based diets. Pteropodids are of exceptional conservation concern with >50% of species considered thre...

Dietary adaptation is a major feature of phenotypic and ecological diversification, yet the genetic basis of dietary shifts is poorly understood. Among mammals, Neotropical leaf-nosed bats (family Phyllostomidae) show unmatched diversity in diet; from a putative insectivorous ancestor, phyllostomids have radiated to specialize on diverse food sourc...

1. Phyllostomid bats exhibit great diversity in skull size and morphology that reflects the degree of resource division and ecological overlap in the group. In particular, Stenodermatinae has high morphological diversification associated with cranial and mandibular traits that is associated with the ability to consume the full range of available fr...

With more than 1,400 species, bats are an incredibly diverse and successful group of mammals that can serve as model systems for many unique evolutionary adaptations. Flight has allowed them to master the sky, while echolocation enables them to navigate in the dark. Being small, secretive, nocturnal creatures has made bats a challenge to study, but...

Biological invasion is one of the main threats to native biodiversity. For a species to become invasive, it must be voluntarily or involuntarily introduced by humans into a nonnative habitat. Mammals were among first taxa to be introduced worldwide for game, meat, and labor, yet the number of species introduced in the Neotropics remains unknown. In...

Although many processes of diversification have been described to explain variation of morphological traits within clades that have obvious differentiation among taxa, not much is known about these patterns in complexes of cryptic species. Molossus is a genus of bats that is mainly Neotropical, occurring from the southeastern United States to south...

We present a revision of the Neotropical bat genus Chiroderma, commonly known as big-eyed bats. Although species of Chiroderma have a wide distribution from western México to southern Brazil, species limits within Chiroderma are not clearly defined, as attested by identification errors in the literature, and there is no comprehensive revision of th...

• Herein we propose a framework for assembling and analyzing Genotype by Sequencing (GBS) data to better understand evolutionary relationships within a group of closely related species using the mastiff bats (Molossus) as our model system. Many species within this genus have low-levels of genetic variation within and between morphologically distinc...

Since the last systematic review of Chiroderma (big-eyed bats) more than two decades ago, we report on biodiversity surveys that expand the distribution and species diversity of this Neotropical genus. The Caribbean endemic species Chiroderma improvisum is documented for the first time from Nevis in the northern Lesser Antilles. A broader geographi...

The mastiff bat Molossus is a broadly distributed genus within the family Molossidae. Molossus includes groups of species that are either morphologically or genetically very similar, rendering the taxonomy of this genus confusing and unstable. In this paper, we provide inferred phylogenetic relationships of Molossus based on the genotype by sequenc...

Abstract Historical events, habitat preferences, and geographic barriers might result in distinct genetic patterns in insular versus mainland populations. Comparison between these two biogeographic systems provides an opportunity to investigate the relative role of isolation in phylogeographic patterns and to elucidate the importance of evolution a...

Mammals are one of the better known groups of animals, and in the Neotropics bats typically comprise about half of the mammalian species diversity. But, well resolved species-level phylogenies are still lacking for most taxa of bats. One broadly distributed genus is the mastiff bats, Molossus. Species within this genus are morphologically very simi...

The Systematic Collections Committee of the American Society of Mammalogists advises curators and other personnel affiliated with natural history collections in matters relating to administration, curation, and accreditation of mammal specimens and their associated data. The Systematic Collections Committee also maintains a list of curatorial stand...

The genus Molossus of the free-tailed bat family Molossidae is morphologically conservative and the level of genetic divergence is also low among many species, which has masked the actual species diversity in the genus. We analyzed the evolutionary relationships among species within Molossus using three mitochondrial (COI, Cytb, and 16S RNA), and t...

Of the 294 species of mammals known from the Guiana Shield of northern South America, 63 are documented from Pantepui (>1500 m a.s.l.), a landscape of Precambrian sandstone mountains with eroded flat-topped summits. This diversity is represented by 7 opossums, 1 anteater, 28 bats, 3 monkeys, 3 carnivores, 1 tapir, 1 deer, and 19 rodents. Only one s...

Xenarthrans—anteaters, sloths, and armadillos—have essential functions for ecosystem maintenance, such as insect control and nutrient cycling, playing key roles as ecosystem engineers. Because of habitat loss and fragmentation, hunting pressure, and conflicts with domestic dogs, these species have been threatened locally, regionally, or even across...

Xenarthrans—anteaters, sloths, and armadillos—have essential functions for ecosystem maintenance, such as insect control and nutrient cycling, playing key roles as ecosystem engineers. Because of habitat loss and fragmentation, hunting pressure, and conflicts with domestic dogs, these species have been threatened locally, regionally, or even across...

The Guiana Shield of South America contains savannas within one of the largest contiguous expanses of pristine tropical rainforest remaining in the world, but biodiversity in the grasslands is poorly known. In lowland Neotropical areas, bats typically comprise the most species-rich group of mammals. We compare the bat faunal community and phylogeog...

As a periodic assessment of the mammal collection resource, the Systematic Collections Committee (SCC) of the American Society of Mammalogists undertakes decadal surveys of the collections held in the Western Hemisphere. The SCC surveyed 429 collections and compiled a directory of 395 active collections containing 5,275,155 catalogued specimens. Ov...

We studied the litter sizes of small rodents and opossums caught in the Guianan Region (Brazilian Amapá, French Guiana, Suriname, and Guyana) by pooling the data of animals collected during various field trips conducted primarily between 1990 and 2017. A series of 569 counts of embryos (or of pouch young for marsupials) in 40 species of Didelphidae...

Bats are excellent models for studying the molecular basis of sensory adaptation. In Chiroptera, a sensory trade-off has been proposed between the visual and auditory systems, though the extent of this association has yet to be fully examined. To investigate whether variation in visual performance is associated with echolocation, we experimentally...

We describe a new species of mastiff bat in the genus Molossus (Molossidae), which was previously confused with the common and widely distributed M. molossus, from Guyana and Ecuador based on morphological and molecular differences. It is diagnosed by the following set of morphological characteristics: bicolored dorsal pelage, rounded anterior arch...

Bats represent one of the largest and most striking nocturnal mammalian radiations, exhibiting many visual system specializations for performance in light-limited environments. Despite representing the greatest ecological diversity and species richness in Chiroptera, Neotropical lineages have been undersampled in molecular studies, limiting the pot...

Molossus is one of the most diverse genera of free-tailed bats in the pantropical family Molossidae and occurs though all the Neotropics. Nevertheless, the taxonomy and phylogeny of this group is poorly understood. Here, we present the data on evolutionary relationships of Molossus based on DNA barcodes of COI gene from 346 specimens of Molossus an...

Bats belonging to the subfamily Vespertilioninae are diverse and cosmopolitan, but their systematic arrangement remains a challenge. Previous molecular surveys suggested new and unexpected relationships of some members compared to more traditional, morphology-based classifications, and revealed the existence of taxonomically undefined lineages. We...

Dominance is an important element of life history. It assures access to resources, which, in turn, affects fitness. By establishing a hierarchy, females may monopolize resources while remaining philopatric. Our genetic study of the sandy pocket mouse, Chaetodipus siccus, has shown a genetic microstructure with private haplotypes in the extremely sm...

Previous studies on genetics of hoary bats produced differing conclusions on the timing of their colonization of the Hawaiian Islands and whether or not North American (Aeorestes cinereus) and Hawaiian (A. semotus) hoary bats are distinct species. One study, using mtDNA COI and nuclear Rag2 and CMA1, concluded that hoary bats colonized the Hawaiian...

Bayesian phylogeny based on mitochondrial ND2 sequences. Numbers at nodes represent Bayesian posterior probabilities. (PDF)

Bayesian phylogeny based on nuclear CMA1 sequences. Individual alleles were used in the analysis. Numbers at nodes represent Bayesian posterior probabilities. Letters following sample names indicate alleles: “A” and “B” represent two different alleles from the same specimen; “AA” represents a homozygous specimen. (PDF)

Bayesian phylogeny based on mitochondrial cytb sequences. Numbers at nodes represent Bayesian posterior probabilities. (PDF)

Bayesian phylogeny based on nuclear Rag2 sequences. Where available, individual alleles were used in the analysis. Numbers at nodes represent Bayesian posterior probabilities. Letters following sample names indicate alleles: “A” and “B” represent two different alleles from the same specimen; “AA” represents a homozygous specimen; “UR” represents un...

Bayesian phylogeny based on mitochondrial ND1 sequences. Numbers at nodes represent Bayesian posterior probabilities. (PDF)

Bayesian phylogeny based on mitochondrial COI sequences. Numbers at nodes represent Bayesian posterior probabilities. (PDF)

The majority (90%) of native terrestrial mammal species living in the Dominican Republic are bats, and two-thirds of these species are endemic to the Caribbean. However, recent molecular studies using DNA barcoding of the mitochondrial cytochrome c oxidase subunit 1 gene have suggested at least a 25% underestimation of biodiversity in bats througho...