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Citations since 2016
4 Research Items
I am a current Ph.D. student in Information Science and Technology at Scalable Data Systems Lab (SCADS), VISTEC, Thailand. My research interests focus lies in using computational science and machine learning techniques to understanding the molecular structure and function. I also encourage the establishment and enhancement of model architectures and algorithms for applications across life sciences and chemical sciences driven by machine learning and computational biology & chemistry techniques.
March 2014 - May 2015
- Student Research Trainee
- Mentor: Dr. Sissades Tongsima, Head of Biostatistics and Informatics Laboratory (Now, National Biobank of Thailand)
A bstract Motivation Lung cancer is a chronic non-communicable disease and is the cancer with the world’s highest incidence in the 21 st century. One of the leading mechanisms underlying the development of lung cancer in nonsmokers is an amplification of the epidermal growth factor receptor (EGFR) gene. However, laboratories employing conventional...
This is Vittamin online meeting EP.1 with tutorial (Thai version) Date: March 22, 2020, 7:00 - 9.30 PM Lecture: Part 1: https://youtu.be/sOc7mqKamTQ Part 2: https://youtu.be/ypzd9TGjgJE Tutorial Github: https://github.com/manbaritone/Vittamin
An abnormal activation of human epidermal growth factor receptor (HER) 2 has been found to associate with several types of human cancer, and thus the protein is a prominent target for cancer therapy. Although several small chemical molecules targeting the tyrosine kinase (TK) of HER family have been identified, the development of a new class of inh...
I have complex (ligand + protein) from docking result and I need to run MD with amber, but I'm not sure in procedure. How can I start to use amber or Do you have some tutorial in ligand-protein MD, Please suggest to me.
I would like to generate 2D protein-ligand interaction after docking procedure. I have problem in software (Ligplot) because software can't identify peptide ligand. I would like to use Schrodinger software or MOE software but I don't have commercial software and license. Do you have any ideas for solve this problem?
I want to add missing atom from pdb file, among 8000 files using command line and set n-terminal = NH2, c-terminal = COOH. What's software that help me?
However, I using pdb2gmx from GROMACS, but I have a problem for set termini (-ter) because I can't set -ter = NH2 and COOH in command line when using loop iteration. Have you any ideas for solve this problem?
This project aims to develop a model for predicting bioactivity (e.g., IC50, Kd, Ki) for ligands against EGFR and Protein Tyrosine Kinase by machine learning with a large-scale and non-redundant dataset.