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Introduction
My work is mostly dedicated to the study of ecological interactions, which modifications are the hidden part of environmental changes. I study how ecological networks respond to different ecological gradients (urbanisation, nutrient enrichment...) and how their topology can carry some ecological information. I use theoretical modelling as well as experimental approaches. I also apply this knowledge to software engineering domain, in order to increase robustness of diversified software systems.
Publications
Publications (77)
Biodiversity experiments revealed that plant diversity loss can decrease ecosystem functions across trophic levels. To address why such biodiversity-function relationships strengthen over time, we established experimental mesocosms replicating a gradient in plant species richness across treatments of shared versus non-shared history of (1) the plan...
Trophic interactions between the species were predicted using a size-constrained feeding-niche model³, which incorporates dietary information and body mass relationships (Fig. 2).
The model was trained on four independent vertebrate food webs, encompassing a total of 1,029 species and 28,931 realized interaction records.
Our preliminary results su...
With the ongoing biodiversity crisis, identifying which species are of particular importance to prevent the extinction of other species has become a pressing issue. However, most approaches to detect these important species are made at a local (i.e, community) level, without considering the potential effect of species dispersion in a landscape. As...
Ecologists have long debated the universality of the energetic equivalence rule (EER), which posits that population energy use should be invariant with average body size due to negative size–density scaling. We explored size–density and size–energy use scaling across 183 geographically–distributed soil invertebrate food webs to investigate the univ...
Spatial and trophic processes profoundly influence biodiversity, yet ecological theories often treat them independently. The theory of island biogeography and related theories on metacommunities predict higher species richness with increasing area across islands or habitat patches. In contrast, food-web theory explores the effects of traits and net...
The relationship of plant diversity and several ecosystem functions strengthens over time. This suggests that the restructuring of biotic interactions in the process of a community’s assembly and the associated changes in function differ between species-rich and species-poor communities. An important component of these changes is the feedback betwe...
Understanding the factors that determine the occurrence and strength of ecological interactions under specific abiotic and biotic conditions is fundamental since many aspects of ecological community stability and ecosystem functioning depend on patterns of interactions among species. Current approaches to mapping food webs are mostly based on trait...
Increasing human pressures threaten fish diversity, with potentially severe but unknown consequences for the functioning of riverine food webs.
Using a 17‐year dataset from multi‐trophic fish communities, we investigated the long‐term effects of human pressure on the diversity and food web functioning. Combining metabolic scaling and ecological net...
When the temperature increases, so do the energetic requirements of species. We find that the energetic stress caused by increases in temperature pushes fish species to consume the first prey they encounter to fulfil their immediate needs, rather than focusing on more energetically rewarding prey. This behaviour increases the vulnerability of commu...
Higher temperatures are expected to reduce species coexistence by increasing energetic demands. However, flexible foraging behaviour could balance this effect by allowing predators to target specific prey species to maximize their energy intake, according to principles of optimal foraging theory. Here we test these assumptions using a large dataset...
The dataset presents a compilation of stomach contents from six demersal fish species from two functional groups inhabiting the Baltic Sea. It includes detailed information on prey identities, body masses, and biomasses recovered from both the fish's digestive systems and their surrounding environment. Environmental parameters, such as salinity and...
The implementation of Wastewater Treatment Plants (WWTPs) brought great improvement in river ecological status. However, WWTP effluents still contain a complex cocktail of pollutants whose environmental effects might go unnoticed, masked by other stressors in the receiving waters or by spatiotemporal variability. We conducted a BACI (Before-After/C...
The dataset presents a compilation of stomach contents from six demersal fish species from two functional groups inhabiting the Baltic Sea. It includes detailed information on prey identities, body masses, and biomasses recovered from both the fish’s digestive systems and their surrounding environment. Environmental parameters, such as salinity and...
Linking biodiversity and the provision of nature’s contribution to people (NCP) remains a challenge. This hinders our ability to properly cope with the decline in biodiversity and the provision of NCP under global climate and land use changes. Here, we propose a framework that combines biodiversity models with food web energy flux approaches to eva...
Artificial light at night (ALAN) is eroding natural light cycles and thereby changing species distributions and activity patterns. Yet little is known about how ecological interaction networks respond to this global change driver. Here, we assess the scientific basis of the current understanding of community-wide ALAN impacts. Based on current know...
Reforestation and afforestation programs are promoted as strategies to mitigate rising atmospheric CO2 concentrations and enhance ecosystem services. Planting diverse forests is supposed to foster such benefits, but optimal tree planting techniques, especially regarding species spatial arrangement, are underexplored.
Here, using field measurements...
Introducing any species in a large number into an ecosystem is never a zero-sum game. In this paper, we assessed what are the main advances on the known impacts of Massively Introduced Managed Species (MIMS) on plant–pollinator communities and networks. We first focused on the raising body of literature studying the effects of the introduction of h...
Understanding and predicting how densities of interacting species change over time has been one of the main goals of community ecology, which has become a pressing challenge in the context of global change.
We present the R package ATNr , which provides an implementation of different versions of Allometric Trophic Network models that simulate the b...
With the ongoing biodiversity crisis, identifying which species are of particular importance to prevent the extinction of other species has become a pressing issue. However, most approaches to detect these important species are made at a local (i.e, community) level, without considering the potential effect of species dispersion in a landscape.
We...
Increasing human pressures threaten fish diversity, with potentially severe but unknown consequences to the functioning of riverine food webs. Using a 17-years dataset from multi-trophic fish communities, we investigated the long-term effects of human pressure (represented by human footprint) on the species richness and energy flux across fish food...
Species‐rich communities exhibit higher levels of ecosystem functioning compared with species‐poor ones, and this positive relationship strengthens over time. One proposed explanation for this phenomenon is the reduction of niche overlap among plants or animals, which corresponds to increased complementarity and reduced competition.
In order to exa...
The relationship of plant diversity and several ecosystem functions strengthens over time. This suggests that the restructuring of biotic interactions in the process of a community’s assembly and the associated changes in function differ between species-rich and species-poor communities. An important component of these changes is the feedback betwe...
The relationship of plant diversity and several ecosystem functions strengthens over time. This suggests that the restructuring of biotic interactions in the process of a community’s assembly and the associated changes in function differ between species-rich and species-poor communities. An important component of these changes is the feedback betwe...
Plant community productivity generally increases with biodiversity, but the strength of this relationship exhibits strong empirical variation. In meta‐food‐web simulations, we addressed if the spatial overlap in plants' resource access and animal space‐use can explain such variability. We found that spatial overlap of plant resource access is a pre...
Wastewater treatment plants (WWTPs) have greatly improved water quality globally. However, treated effluents still contain a complex cocktail of pollutants whose environmental effects might go unnoticed, masked by additional stressors in the receiving waters or by spatiotemporal variability. We conducted a BACI (Before-After/Control-Impact) ecosyst...
1. Species-rich communities exhibit higher levels of ecosystem functioning compared to species-poor ones, and this positive relationship strengthens over time. One proposed explanation for this phenomenon is the reduction of niche overlap among plants or animals, which corresponds to increased complementarity and reduced competition.
2. In order to...
Models that estimate rates of energy flow in complex food webs often fail to account for species-specific prey selectivity of diverse consumer guilds. While DNA metabarcoding is increasingly used for dietary studies, methodological biases have limited its application for food web modeling. Here, we used data from dietary metabarcoding studies of zo...
All data needed to evaluate the conclusions in the paper are present in the paper and/or the Supplementary Materials. Raw DNA sequences and associated metadata are available at the European Nucleotide Archive (ENA) under the accession number PRJEB51972. All data, code, and a tutorial needed to build the model and reproduce all figures and results f...
Species-rich communities exhibit higher levels of ecosystem functioning compared to species-poor ones, and this positive relationship strengthens over time. One proposed mechanism for this phenomenon is the reduction of niche overlap and thus, competition within plants or consumers. To explore how niche differentiation affects the plant diversity-p...
Overfishing to feed the world's growing population is depleting fish stocks. As these species are embedded in complex food webs, single-species management plans must be replaced with models integrating multispecies fisheries, economic market feedbacks, and fisher behaviour into complex ecological interaction networks to promote sustainable resource...
Plant community productivity generally increases with biodiversity, but the strength of this relationship exhibits strong empirical variation. In meta-food-web simulations, we addressed if the spatial overlap in plants’ resource access and movement of animals can explain such variability. We found that spatial overlap of plant resource access is a...
On a global scale, fisheries harvest an estimated 96 million tonnes of fish biomass annually, making them one of the most important drivers of marine ecosystem biodiversity. Yet little is known about the interactions between fisheries and the dynamics of complex food webs in which the harvested species are embedded. We have developed a synthetic mo...
This poster, designed by Pierre Ganault, presetend the sOilFauna project to the SFE²-GfÖ-EEF conference in Metz on November 2022.
The poster is largely inspired by the publication by Mathieu et al., 2022 Soil Organisms 10.25674/so94iss2id282
Understanding the formation of feeding links provides insights into processes underlying food webs. Generally, predators feed on prey within a certain body‐size range, but a systematic quantification of such feeding niches is lacking. We developed a size‐constrained feeding‐niche (SCFN) model and parameterized it with information on both realized a...
The relationship between species' body masses and densities is strongly conserved around a three‐quarter power law when pooling data across communities. However, studies of local within‐community relationships have revealed major deviations from this general pattern, which has profound implications for their stability and functioning. Despite multi...
- Understanding and predicting how densities of interacting species change over time has been one of the main goals of community ecology, which has become a pressing challenge in the context of global change.
- We present the R package ATNr, which provides an implementation of different versions of Allometric Trophic Network models (Yodzis and Inne...
The ratio of predator-to-prey biomass is a key element of trophic structure that is typically investigated from a food chain perspective, ignoring channels of energy transfer (e.g. omnivory) that may govern community structure. Here, we address this shortcoming by characterising the biomass structure of 141 freshwater, marine and terrestrial food w...
Understanding global biodiversity change, its drivers, and the ecosystem consequences requires a better appreciation of both the factors that shape soil macrofauna communities and the ecosystem effects of these organisms. The project "sOilFauna" was funded by the synthesis center sDiv (Germany) to address this major gap by forming a community of so...
The Amazon forest has the highest biodiversity on Earth. However, information on Amazonian vertebrate diversity is still deficient and scattered across the published, peer‐reviewed, and gray literature and in unpublished raw data. Camera traps are an effective non‐invasive method of surveying vertebrates, applicable to different scales of time and...
The Amazon forest has the highest biodiversity on Earth. However, information on Amazonian vertebrate diversity is still deficient and scattered across the published, peer-reviewed, and gray literature and in unpublished raw data. Camera traps are an effective non-invasive method of surveying vertebrates, applicable to different scales of time and...
The relationship between species body masses and densities is strongly conserved around a three-quarter power law when pooling data across communities. However, studies of local within-community relationships have revealed major deviations from this general pattern, which has profound implications for their stability and functioning. Despite multip...
Despite the diversity and functional importance of invertebrates, predicting their response to global warming remains challenging as it requires extensive measurements of physiological performance or rarely available high-resolution distribution data. Mechanistic models can help overcome these limitations by generalizing fundamental physiological p...
Despite intensive research on species dissimilarity patterns across communities (i.e. β‐diversity), we still know little about their implications for variation in food‐web structures. Our analyses of 50 lake and 48 forest soil communities show that, while species dissimilarity depends on environmental and spatial gradients, these effects are only w...
The survival of animals under global warming strongly depends on their individual thermal niches, which result from the balance between energy loss and gain. Active movement is an important component of this energetic balance, as it affects not only energy gain via food intake but also energy loss via activity metabolism. Here, we develop a novel t...
Resource-use complementarity of producer species is often invoked to explain the generally positive diversity–productivity relationships. Additionally, multi-trophic interactions that link processes across trophic levels have received increasing attention as a possible key driver. Given that both are integral to natural ecosystems, their interactiv...
Global change alters ecological communities with consequences for ecosystem processes. Such processes and functions are a central aspect of ecological research and vital to understanding and mitigating the consequences of global change, but also those of other drivers of change in organism communities. In this context, the concept of energy flux th...
Adaptative foraging behaviour should promote species coexistence and biodiversity under climate change as consumers are expected to maximise their energy intake, according to principles of optimal foraging theory. We test these assumptions using a unique dataset comprising (1) 22,185 stomach contents of fish species across functional groups and fee...
Resource-use complementarity of producer species is often invoked to explain their generally positive diversity-productivity relationships. Additionally, multi-trophic interactions that link processes across trophic levels have received increasing attention as a possible key driver. Given that both are integral to natural ecosystems, their interact...
Food webs capture the trophic relationships and energy fluxes between species, which has fundamental impacts on ecosystem functioning and stability. Within a food web, the energy flux distribution between a predator and its prey species is shaped by food quantity–quality trade‐offs and the contiguity of foraging. But the distribution of energy flux...
Global change alters ecological communities with consequences for ecosystem processes. Such processes and functions are a central aspect of ecological research and vital to understanding and mitigating the consequences of global change, but also those of other drivers of change in organism communities. In this context, the concept of energy flux th...
Global change drivers like warming and changing nutrient cycles have a substantial impact on ecosystem functioning. In most modelling studies, organism responses to warming are described through the temperature dependence of their biological rates. In nature, however, organisms are more than their biological rates. Plants are flexible in their elem...
Arthropod herbivores cause substantial economic costs that drive an increasing need to develop environmentally sustainable approaches to herbivore control. Increasing plant diversity is expected to limit herbivory by altering plant-herbivore and predator-herbivore interactions, but the simultaneous influence of these interactions on herbivore impac...
Most studies of plant–animal mutualistic networks have come from a temporally static perspective. This approach has revealed general patterns in network structure, but limits our ability to understand the ecological and evolutionary processes that shape these networks and to predict the consequences of natural and human‐driven disturbance on specie...
The study of mutualistic interaction networks has led to valuable insights into ecological and evolutionary processes. However, our understanding of network structure may depend upon the temporal scale at which we sample and analyze network data. To date, we lack a comprehensive assessment of the temporal scale‐dependence of network structure acros...
Global warming threatens community stability and biodiversity around the globe. Knowledge of the mechanisms underlying the responses to rising temperatures depends heavily on generic food-web models that do not account for changes in network structure along latitudes and temperature gradients. Using 124 marine rock-pool food webs sampled across fou...
Predator–prey interactions in natural ecosystems generate complex food webs that have a simple universal body-size architecture where predators are systematically larger than their prey. Food-web theory shows that the highest predator–prey body-mass ratios found in natural food webs may be especially important because they create weak interactions...
With the increase in the number of introduced species each year, biological invasions are considered as one of the most important environmental problems for native biodiversity. In invaded habitats, the establishment of exotic plant species depends on the abiotic and biotic environment. Herbivores and neighboring plants (native or exotic) comprise...
Understanding how changes in biodiversity will impact the stability and functioning of ecosystems is a central challenge in ecology. Food‐web approaches have been advocated to link community composition with ecosystem functioning by describing the fluxes of energy among species or trophic groups. However, estimating such fluxes remains problematic...
Understanding how changes in biodiversity will impact the stability and functioning of ecosystems is a central challenge in ecology. Food-web approaches have been advocated to link community composition with ecosystem functioning by describing the fluxes of energy among species or trophic groups. However, estimating such fluxes remains problematic...
Since the rise of agriculture, human populations have domesticated plant and animal species to fulfil their needs. With modern agriculture, a limited number of these species has been massively produced over large areas at high local densities. Like invasive species, these Massively Introduced Managed Species (MIMS) integrate local communities and c...
Since the rise of agriculture, human populations have domesticated plant and animal species to fulfil their needs. With modern agriculture, a limited number of these species has been massively produced over large areas at high local densities. Like invasivespecies, these Massively Introduced Managed Species (MIMS) integrate local communities and ca...
Responses of ecosystems to modifications of their environmental conditions are usually considered in terms of biodiversity or function. Maybe because they represent a hidden part of ecosystems, responses of ecological interactions are rarely studied. A more comprehensive view of the processes underlying the restructuring of food webs under environm...