Ben Bond-Lamberty

Pacific Northwest National Laboratory | PNNL · Joint Global Change Research Institute

Coastal ecosystems are at the nexus of many high priority challenges in environmental sciences, including predicting the influences of compounding disturbances exacerbated by climate change on biogeochemical cycling. While research in coastal science is fundamentally transdisciplinary—as drivers of biogeochemical and ecological processes often span...

Fluxes of greenhouse gases are a critical component of the earth's natural climate, but anthropogenic emissions have created an imbalance and resulted in global climate change. Quantifying the emission of these gases is vital to our understanding of their sources and sinks, both natural and anthropogenic. The static chamber method, in which a syste...

Societal Impact Statement Human interactions with forests have shaped Earth's climate for millennia and will continue to do so as we target net‐zero emission goals. Accurately characterizing these climate impacts requires making reliable forest carbon data available for forest monitoring and planning. Here, we develop a semi‐automated process for s...

Trees can differ enormously in their crown architectural traits, such as the scaling relationships that link their height and crown size to their stem diameter. Yet despite the importance of crown architecture in shaping the structure and function of woody ecosystems, we lack a complete picture of what drives this incredible diversity in crown shap...

Hector is an open-source reduced-complexity climate–carbon cycle model that models critical Earth system processes on a global and annual basis. Here, we present an updated version of the model, Hector V3.2.0 (hereafter Hector V3), and document its new features, implementation of new science, and performance. Significant new features include permaf...

AGU Publications encourages research collaborations between regions, countries, and communities. When well‐resourced researchers complete research or field work in low‐resourced settings while excluding local communities or researchers from the process, this can be referred to as parachute science or helicopter research. To help address concerns of...

A primary advantage to using reduced complexity climate models (RCMs) has been their ability to quickly conduct probabilistic climate projections, a key component of uncertainty quantification in many impact studies and multisector systems. Providing frameworks for such analyses has been a target of several RCMs used in studies of the future co-evo...

Peer review is a crucial but time‐consuming and sometimes frustrating part of science. The Editors of JGR: Biogeosciences are deeply appreciative of, and sincerely thank, the many 2023 reviewers who donated their time and expertise in support of the journal.

Coastal terrestrial-aquatic interfaces (TAIs) are crucial contributors to global biogeochemical cycles and carbon exchange. The soil carbon dioxide (CO2) efflux in these transition zones is however poorly understood due to the high spatiotemporal dynamics of TAIs, as various sub- ecosystems in this region are compressed and expanded by complex infl...

Soil respiration (Rs), the soil‐to‐atmosphere flux of CO2, is a dominant but uncertain part of the carbon cycle, even after decades of study. This review focuses on progress in understanding Rs from laboratory incubations to global estimates. We survey key developments of in situ ecosystem‐scale Rs observations and manipulations, synthesize Rs meta...

Nuclear magnetic resonance (NMR) spectroscopy is a useful tool for detection and identification of molecular structural information, with increasing applications in environmental sciences. NMR instrument outputs are however heterogeneous and require extensive post‐processing, creating barriers to their use and application by non‐specialists. Here,...

In this short article, we review the current status and future directions of integrated Human-Earth system modeling by coupling E3SM (Energy Exascale Earth System Model) and GCAM (Global Change Analysis Model).

Isotopic pool dilution is a powerful approach to quantify gross biogeochemical transformation rates, but remains seldom used despite its potential. To facilitate broader implementation of pool dilution methods, we present a user‐friendly R package that optimizes gross production and consumption rates (and optionally fractionation constants as well)...

Hector, an open-source reduced complexity climate-carbon cycle model. Hector is a computationally efficient source of climate information, capable of completing a run in a fraction of a second. Hector models critical Earth system processes on a global and annual basis. Here we present an updated version of the model, Hector V3. In this manuscript,...

Forest soil respiration (Rs) plays an important role in the carbon balance of terrestrial ecosystems. China's forest occupies a large part of the world's forest. However, due to the lack of integrated observation data and appropriate upscaling methodologies, substantial uncertainties exist in the Rs evaluation, which limits our understanding of the...

Upland forest soils are typically major atmospheric carbon dioxide (CO2) sources and methane (CH4) sinks, but the contributions of root and microbial processes, as well as their separate temporal responses to environmental change, remain poorly understood. This 2‐year study was conducted in a temperate, deciduous forest located on the Chesapeake Ba...

We made a commitment to better include underrepresented members of our community in the publication pipeline of JGR: Biogeosciences. This commitment consists of regular updates on our policies and practices, and concrete actions we intend to implement over the next year. So far, our progress to tackle biases and ensure equitable research in the bio...

Across the globe, the forest carbon sink is increasingly vulnerable to an expanding array of low- to moderate-severity disturbances. However, some forest ecosystems exhibit functional resistance (i.e., the capacity of ecosystems to continue functioning as usual) following disturbances such as extreme weather events and insect or fungal pathogen out...

Soil respiration (Rs) is the largest outward flux of carbon (C) from terrestrial ecosystems, accounting for more than half of total temperate forest C loss. Evaluating the drivers of this globally important flux, as well as identifying autotrophic (Ra) and heterotrophic (Rh) responses, is critical in the era of rapid global change because small cha...

Groundwater biogeochemistry in coastal areas is spatially and temporally dynamic because fluctuations in groundwater level may cause alternate redox between distinct hydrological conditions. Recent studies have proposed connections between biogeochemistry and large-scale hydrological processes, specifically focusing on the role of redox-active comp...

Atmospheric carbon dioxide (CO 2 ) concentrations have increased as a direct result of human activity and are at their highest level over the last 2 million years, with profound impacts on the Earth system. However, the magnitude and future dynamics of land and ocean carbon sinks are not well understood; therefore, the amount of anthropogenic fossi...

Plain Language Summary The editorial team at JGR: Biogeosciences would like to extend thanks to the 2022 reviewers who offered their time and expertise to help make decisions and improve our papers.

Earth System Models (ESMs) are increasingly representing agriculture due to its impact on biogeochemical cycles, local and regional climate, and fundamental importance for human society. Realistic large scale simulations may require spatially varying crop parameters that capture crop growth at various scales and among different cultivars, as well a...

Coastal upland forests are facing widespread mortality as sea-level rise accelerates and precipitation and storm regimes change. The loss of coastal forests has significant implications for the coastal carbon cycle; yet, predicting mortality likelihood is difficult due to our limited understanding of disturbance impacts on coastal forests. The mani...

Understanding the temperature sensitivity (Q10) of soil respiration is critical for benchmarking the potential intensity of regional and global terrestrial soil carbon fluxes-climate feedbacks. Although field observations have demonstrated the strong spatial heterogeneity of Q10, a significant knowledge gap still exists regarding to the factors dri...

Perennial bioenergy crops are increasingly important for the production of ethanol and other renewable fuels, and as part of an agricultural system that alters the climate through its impact on biogeophysical and biogeochemical properties of the terrestrial ecosystem. Few Earth System Models (ESMs) represent such crops, however. In this study, we e...

Here we provide the ‘Global Spectrum of Plant Form and Function Dataset’, containing species mean values for six vascular plant traits. Together, these traits –plant height, stem specific density, leaf area, leaf mass per area, leaf nitrogen content per dry mass, and diaspore (seed or spore) mass – define the primary axes of variation in plant form...

Soil respiration—the flow of biologically‐generated CO2 from the soil surface to the atmosphere—is a major component of global carbon cycling, but the long‐term response of this flux to altered precipitation regimes remains uncertain, due to different responses of soil respiration in distinct ecosystems with varying degrees of water limitation. We...

Research can be more transparent and collaborative by using Findable, Accessible, Interoperable, and Reusable (FAIR) principles to publish Earth and environmental science data. Reporting formats—instructions, templates, and tools for consistently formatting data within a discipline—can help make data more accessible and reusable. However, the immen...

Soil microbes ultimately drive the mineralization of soil organic carbon and thus ecosystem functions. We compiled a dataset of the seasonality of microbial biomass carbon (MBC) and developed a semi-mechanistic model to map monthly MBC across the globe. MBC exhibits an equatorially symmetric seasonality between the Northern and Southern Hemispheres...

A large literature exists on mechanisms driving soil production of the greenhouse gases CO2 and CH4. Although it is common knowledge that measurements obtained through field studies vs. laboratory incubations can diverge because of the vastly different conditions of these environments, few studies have systematically examined these patterns. These...

Numerous plant hydrodynamic models have started to be implemented in vegetation dynamics models, reflecting the central role of plant hydraulic traits in driving water, energy, and carbon cycles, as well as plant adaptation to climate change. Different numerical approximations of the governing equations of the hydrodynamic models have been document...

Key message Large-scale stem-girdling experiment reduced soil respiration for five consecutive years. Timing and magnitude of soil respiration declines are better explained by changes in leaf area rather than in soil microclimate. AbstractSoil respiration (Rs) represents the largest flux of carbon (C) from forests to the atmosphere, but the long-te...

The temporal dynamics of forest canopy structure are influenced by disturbances that alter vegetation quantity and distribution. While canopy structural indicators such as leaf area index (LAI), canopy cover, and canopy height have been widely studied in the context of disturbance, the post-disturbance temporal dynamics of structural complexity, wh...

The capacity of forests to resist structural change and retain material legacies–the biotic and abiotic resources that persist through disturbance–is crucial to sustaining ecosystem function after disturbance. However, the role of forest structure as both a material legacy and feature supporting carbon (C) cycling stability following disturbance ha...

Increasing seawater exposure is killing coastal trees globally, with expectations of accelerating mortality with rising sea levels. However, the impact of concomitant changes in atmospheric CO2 concentration, temperature, and vapor pressure deficit (VPD) on seawater‐induced tree mortality is uncertain. We examined the mechanisms of seawater‐induced...

Data capturing multiple axes of tree size and shape, such as a tree's stem diameter, height and crown size, underpin a wide range of ecological research - from developing and testing theory on forest structure and dynamics, to estimating forest carbon stocks and their uncertainties, and integrating remote sensing imagery into forest monitoring prog...

Numerous plant hydrodynamic models have started to be implemented in vegetation dynamics models, reflecting the central role of plant hydraulic traits in driving water, energy and carbon cycle, as well as plant adaptation to climate change. Different numerical approximations of the governing equations of the hydrodynamic models have been documented...

Observations of woody plant mortality in coastal ecosystems are globally widespread, but the overarching processes and underlying mechanisms are poorly understood. This knowledge deficiency, combined with rapidly changing water levels, storm surges, atmospheric CO2, and vapor pressure deficit, creates large predictive uncertainty regarding how coas...

Vegetation indices (VIs), which describe remotely sensed vegetation properties such as photosynthetic activity and canopy structure, are widely used to study vegetation dynamics across scales. However, VI-based results can vary between indices, sensors, quality control measures, compositing algorithms, and atmospheric and sun–target–sensor geometry...

The terrestrial carbon cycle is a major source of uncertainty in climate projections. Its dominant fluxes, gross primary productivity (GPP), and respiration (in particular soil respiration, R S ), are typically estimated from independent satellite-driven models and upscaled in situ measurements, respectively. We combine carbon-cycle flux estimates...

Coastal forests worldwide are vulnerable to a dramatic transition from upland to wetland as sea-level rise accelerates and regimes of precipitation and storms change. However, the biogeochemical impacts of shifting salinity and inundation disturbance that foreshadow forest to wetland state transitions are largely unknown. This experiment used a nat...

Carbon (C) and greenhouse gas (GHG) research has traditionally required data collection and analysis using advanced and often expensive instruments, complex and proprietary software, and highly specialized research technicians. Partly as a result, relatively little C and GHG research has been conducted in resource-constrained developing countries....

Soil erosion is a major threat to soil resources, causing environmental degradation and contributing to poverty in many parts of the world. Many field experiments have been performed over the past century to study spatio-temporal patterns of soil erosion caused by surface runoff under different environmental conditions. However, these data have nev...

Aim Soil respiration (RS) is one of the largest fluxes in the global carbon cycle. It is composed of respiration by roots and heterotrophic organisms, with each component having distinctive drivers and sensitivities and, consequently, varying feedback potential to climate change. Global drivers of the total flux of RS are widely studied and general...

Forests dominate the global terrestrial carbon budget, but their ability to continue doing so in the face of a changing climate is uncertain. A key uncertainty is how forests will respond to (resistance) and recover from (resilience) rising levels of disturbance of varying intensities. This knowledge gap can optimally be addressed by integrating ma...

Diffusion-based moisture functions could provide insight into soil physical processes and potentially represent a more rigorous approach to model soil moisture-respiration relationships. However, large prediction bias remains when these functions are evaluated with field observations. Here we revisit the concept of diffusion limited substrate bioac...

Fire is one of the most important disturbances of the earth-system, shaping the biodiversity of ecosystems and particularly forests. Anthropogenic drivers such as climatic change and other human activities could produce potentially abrupt changes in fire regimes, triggering more profound transformations like the transition from forests to savannah...

The concept of stability is central to the study and sustainability of vital ecosystem goods and services as disturbances increase globally. While ecosystem ecologists, including carbon (C) cycling scientists, have long‐considered multiple dimensions of disturbance response, our discipline lacks an agreed‐upon analytical framework for characterizin...

Carbon (C) and greenhouse gas (GHG) research has traditionally required data collection and analysis using advanced and often expensive instruments, complex and proprietary software, and skilled technicians. Partly as a result, relatively little C and GHG research has been conducted in resource-constrained developing countries. At the same time, th...

Core-scale soil carbon fluxes are ultimately regulated by pore-scale dynamics of substrate availability and microbial access. These are constrained by physicochemical and biochemical phenomena (e.g. spatial access and hydrologic connectivity, physical occlusion, adsorption-desorption with mineral surfaces, nutrient and resource limitations). We con...