Artur Alves

• PhD
• Professor (Associate) at University of Aveiro

Pine pitch canker (PPC) emerged as a significant problem in 1945 in Southeastern USA. The causal agent, Fusarium circinatum , has spread widely and now occurs in pine forests and plantations worldwide. Fusarium circinatum causes damping off, shoot and tip die‐back, and the death of seedlings in nurseries. Infection of mature trees leads to excessiv...

Globally, forests are constantly threatened by a plethora of disturbances of natural and anthropogenic origin, such as climate change, forest fires, urbanization, and pollution. Besides the most common stressors, during the last few years, Portuguese forests have been impacted by severe decline phenomena caused by invasive pathogens, many of which...

This study investigates the impact of organic (OF) and conventional farming (CF) on soil fungal communities in banana monoculture plantations on Madeira Island. We hypothesized that OF promotes beneficial fungal groups over harmful ones, sustaining soil health. Soil samples were collected from six plantations (three OF and three CF) for ITS amplico...

With the simultaneous growth in interest from the mycological community to discover fungal species and classify them, there is also an important need to assemble all taxonomic information onto common platforms. Fungal classification is facing a rapidly evolving landscape and organizing genera into an appropriate taxonomic hierarchy is central to be...

Agricultural soils are responsible for ecological functions and services that include primary production of food, fiber and fuel, nutrient cycling, carbon cycling and storage, water infiltration and purification, among others. Fungi are important drivers of most of those ecosystem services. Given the importance of fungi in agricultural soils, in th...

The contribution of Eucalyptus globulus plantations to timber production for pulp, paper and energy production may be hampered by climate change. It is expected that Eucalyptus productivity may be affected through drought stress and changes to both pathogen distribution/pathogenicity and host-pathogen interactions. The impact of the fungal pathogen...

The Global Consortium for the Classification of Fungi and fungus-like taxa is an international initiative of more than 550 mycologists to develop an electronic structure for the classification of these organisms. The members of the Consortium originate from 55 countries/regions worldwide, from a wide range of disciplines, and include senior, mid-ca...

This article is the 15th contribution in the Fungal Diversity Notes series, wherein 115 taxa from three phyla, nine classes, 28 orders, 48 families, and 64 genera are treated. Fungal taxa described and illustrated in the present study include a new family, five new genera, 61 new species, five new combinations, one synonym, one new variety and 31 r...

Fungal diversity notes 1611–1716

Early research on marine fungi was mostly descriptive, with an emphasis on their diversity and taxonomy, especially of those collected at rocky shores on seaweeds and driftwood. Subsequently, further substrata (e.g. salt marsh grasses, marine animals, seagrasses, sea foam, seawater, sediment) and habitats (coral reefs, deep-sea, hydrothermal vents,...

disease, emerging, oomycetes During spring 2022 Phytophthora related-disease symptoms were observed in three Eucalyptus globulus plantations in central Portugal (Aveiro district). Affected trees displayed a range of symptoms including root rot, bleeding cankers and extensive canopy dieback (Figure 1). Average disease incidence and tree mortality ra...

Marine environments occupy more than 70% of the earth’s surface, integrating very diverse habitats with specific characteristics. This heterogeneity of environments is reflected in the biochemical composition of the organisms that inhabit them. Marine organisms are a source of bioactive compounds, being increasingly studied due to their health-bene...

Zalerion maritima is a marine fungus that has been studied for the biodegradation of (micro)plastics. Here, we report the draft genome sequence of strain ATCC 34329, which was shown to have a size of 58.4 Mb, a GC content of 44.39%, and 10,802 predicted genes.

Recent field surveys conducted in five common alder ecosystems in Portugal have shown the occurrence of severe canopy dieback, bleeding canker and root rot symptoms indicative of Phytophthora infections. Isolations from symptomatic tissues, rhizosphere and water samples yielded a total of 13 Phytophthora species belonging to 6 phylogenetic clades,...

Blueberries (Vaccinium corymbosum L.) are cultivated worldwide and represent an important asset for the Portuguese economy. Pathogen infection and water deficiency are known to affect crops productivity worldwide, thus limiting plant yield or fruit quality. Diaporthe is a cosmopolitan genus comprising plant pathogens and endophytes, that may switch...

The use of fungicides in agriculture has been playing a role in the enhancement of agricultural yields through the control of pathogens causing serious diseases in crops. Still, adverse environmental and human health effects resulting from its application have been reported. In this study, the possibility of readjusting the formulation of a commerc...

Production from crops of pome, stone fruit, nut, berry fruit, citrus, grapevine, and olive is increasingly threatened by fungal trunk diseases (FTD). These diseases and the consequent production losses are major problems. Many fungi (including Botryosphaeriaceae, Calosphaeriaceae, Diaporthaceae, Diatrypaceae, Nectriaceae, Phaeomoniellaceae, Pleospo...

Current agricultural methodologies are vulnerable to erratic climate and are dependent on cost-intensive fertilization to ensure high yields. Sustainable practices should be pursued to ensure food security. Phaseolus vulgaris L. is one of the most produced legumes worldwide and may be an alternative to reduce the environmental impact of meat produc...

Fungal species of the family Botryosphaeriaceae are distributed worldwide and are known important pathogens of a wide variety of forestry and agricultural plant hosts. The role of global changes impacts, especially climate change, on Botryosphaeriaceae-related diseases is still poorly understood. We mapped suitable areas for three Botryosphaeriacea...

Neofusicoccum parvum is a fungal plant pathogen of a wide range of hosts but knowledge about the virulence factors of N. parvum and host–pathogen interactions is rather limited. The molecules involved in the interaction between N. parvum and Eucalyptus are mostly unknown, so we used a multi-omics approach to understand pathogen–host interactions. W...

Candida species are the causative agent of oral candidiasis, with medical devices being platforms for yeast anchoring and tissue colonization. Identifying the infectious agent involved in candidiasis avoids an empirical prescription of antifungal drugs. The application of high-throughput technologies to the diagnosis of yeast pathogens has clear ad...

In an era of climate change and global trade, forests sustainability is endangered by several biotic threats. Pine pitch canker (PPC), caused by Fusarium circinatum, is one of the most important disease affecting conifers worldwide. To date, no effective control measures have been found for this disease. Earlier studies on PPC were mainly focused o...

The genus Diaporthe includes pathogenic species distributed worldwide and affecting a wide variety of hosts. Diaporthe amygdali and Diaporthe eres have been found to cause cankers, dieback, or twig blights on economically important crops such as soybean, almond, grapevine, and blueberry. Despite their importance as plant pathogens, the strategies o...

Diseases and climate change are major factors limiting grape productivity and fruit marketability. Lasiodiplodia theobromae is a fungus of the family Botryosphaeriaceae that causes Botryosphaeria dieback of grapevine worldwide. Abiotic stress may change host vitality and impact susceptibility to the pathogen and/or change the pathogen’s life cycle....

Sphaeropsidin A (SphA) is a pimarane diterpene produced by several fungi associated with plants. Following previous evidence of insecticidal properties of SphA, we investigated its contact and oral toxicity against the model chewing lepidopteran Spodoptera littoralis. The compound showed no lethal effect when directly sprayed on larvae, while it pr...

Grapevine trunk diseases constitute one of the major problems for viticulture worldwide, with Botryosphaeria dieback considered as one of the most important of these diseases. In this work, we aimed to (i) evaluate the effect of the combination of two products, Esquive® (a Trichoderma-based product) and LC2017 (a low-copper-based product), in the c...

Best practices for describing a new fungal species are a topic often discussed by several authors. However, to our knowledge, no studies have evaluated the quality of standards used for publication of new taxa. We selected a list of 210 representatives of the family Botryosphaeriaceae, and their descriptions were evaluated and scored according to a...

Definition Marine fungi play a crucial role in energy flow and nutrient recycling, mediating the cycling of dissolved organic matter in marine environments. However, despite being a prolific group of organisms, marine fungi have been largely neglected for a long time. Besides their importance in the marine food web, marine fungi represent an active...

The genus Emericellopsis is found in terrestrial, but mainly in marine, environments with a worldwide distribution. Although Emericellopsis has been recognized as an important source of bioactive compounds, the range of metabolites expressed by the species of this genus, as well as the genes involved in their production are still poorly known. Unta...

Aspergillus section Circumdati encompasses several species that express both beneficial (e.g., biochemical transformation of steroids and alkaloids, enzymes and metabolites) and harmful compounds (e.g., production of ochratoxin A (OTA)). Given their relevance, it is important to analyze the genetic and metabolic diversity of the species of this sec...

Blueberries (Vaccinium corymbosum) are widely cultivated worldwide and largely consumed due to their known antioxidant and medicinal properties. Although Diaporthe species have been documented in Portugal as causal agents of blueberry twig blight and dieback, there is still scarce information on the species that cause these symptoms. Moreover, Diap...

Botryosphaeria dieback is a grapevine trunk disease that affects all viticulture regions of the world. Species of the genus Lasiodiplodia have been reported as pathogenic towards grapevine in several growing regions and have also been previously reported from Portuguese vineyards. Species in this genus, particularly Lasiodiplodia theobromae, have b...

Blueberries (Vaccinium corymbosum) have been increasingly cultivated in Portugal. Although blueberry is known to be susceptible to twig blight and dieback caused by pestalotioid fungi, there is still scarce information regarding this issue. To bridge this gap, a survey on blueberry plantations in Portugal was carried out to assess the diversity of...

The genus Lasiodiplodia has been reported from several grape growing regions and is considered as one of the fastest wood colonizers, causing Botryosphaeria dieback. The aim of this study was to (i) evaluate the efficacy of Esquive®, a biocontrol agent, on vineyard pruning wound protection, applied single or, in a combined protection strategy with...

band and brown spot needle blights. Needles showing spots and/or bands with fruiting bodies were sampled. From 25 pine trees samples, 82 fungal isolates were successfully retrieved. The most common fungal genera were Pestalotiopsis (42.68%, n = 35), Rhizos-phaera (28.04%, n = 23) and Cladosporium (9.75%, n = 8). Seven isolates could not be assigned...

Species in Diaporthe are largely reported as important plant pathogens. Identification of species in this genus has been complemented by morphological and molecular features. However, one important factor delaying this process is the struggle to formulate robust species concepts to create adequate international phytosanitary measures. Regardless of...

The Botryosphaeriaceae family is one of the most widespread and cosmopolitan endophytic group of fungi. Every year, species of this family cause severe damages on table and wine grape production, worldwide. However, this threat is still poorly known in Algeria. In this study, a large number of Botryosphaeriaceae-like isolates were obtained from sym...

Mitidjospirone, a new spiridioxynaphthalene, was isolated from the mycelial extract a strain of Lasiodiplodia mitidjana, a recently described species belonging to the family Botryosphaeriaceae. Its structure was elucidated by extensive spectroscopic analysis and the absolute configuration was determined by electronic circular dichroism (ECD) experi...

Fusarium circinatum, causing pine pitch canker (PPC), affects conifers productivity and health worldwide. Selection and breeding for resistance arises as the most promising approach to fight PPC. Therefore, it is crucial to explore the response of hosts with varying levels of susceptibility to PPC to unveil the genes/pathways behind these phenotype...

The unambiguous application of fungal names is important to communicate scientific findings. Names are critical for (clinical) diagnostics, legal compliance, and regulatory controls, such as biosafety, food security, quarantine regulations, and industrial applications. Consequently, the stability of the taxonomic system and the traceability of nome...

The production of avocado in Peru has been increasing over the last five years and it represents a major export commodity. However, dieback symptoms, typical of Botryosphaeriaceae, have been observed in avocado orchards throughout the country, leading to economic losses. Thus, this study aimed to evaluate the diversity and pathogenicity of species...

There is an urgent need for new substances to overcome current challenges in the health sciences. Marine fungi are known producers of numerous compounds, but the manipulation of growth conditions for optimal compound production can be laborious and time-consuming. In Portugal, despite its very long coastline, there are only a few studies on marine...

DNA sequence analysis has been of the utmost importance to delimit species boundaries in the genus Diaporthe. However, the common practice of combining multiple genes, without applying the genealogical concordance criterion has complicated the robust delimitation of species, given that phylogenetic incongruence between loci has been disregarded. De...

Fusarium circinatum causes one of the most important diseases of conifers worldwide, the pine pitch canker (PPC). However, no effective field intervention measures aiming to control or eradicate PPC are available. Due to the variation in host genetic resistance, the development of resistant varieties is postulated as a viable and promising strategy...

The fungus Lasiodiplodia theobromae is one of the main causal agents of trunk canker and dieback of grapevine. The objective of this work was to evaluate the efficiency of photodynamic inactivation (PDI) of L. theobromae with synthetic and natural photosensitizers and irradiation with either sunlight or artificial photosynthetically active radiatio...

Lignicolous marine fungi are a particular group of microorganisms that are typically found in mangroves, salt marshes, and estuaries, normally associated with driftwood or submerged wood. During investigations of lignicolous fungi occurring in the estuary Ria de Aveiro, Portugal, wood baits were submerged in a marina for 1 year. Seventeen distinct...

Although urban wastewater treatment plants (UWWTPs) are important sites for antibiotic resistance elimination, their limitation in producing resistance-free effluents is recognized. Despite the critical importance of carbapenems to human health, the fate and diversity of carbapenem-resistant bacteria (CRB) in UWWTPs is still poorly understood. We a...

Botryosphaeriaceae-related diseases occur worldwide in a wide variety of plant hosts. The number of studies targeting the distribution, diversity, ecology, and pathogenicity of Botryosphaeriaceae species are consistently increasing. However, with the lack of consistency in species delimitation, the name of hosts, and the locations of studies, it is...

The genus Neofusicoccum is comprised of approximately 50 species with a worldwide distribution and is typically associated with plants. Neofusicoccum is well-known for the diseases it causes on economically and ecologically relevant host plants. In particular, members of this genus are responsible for grapevine diseases, such as leaf spots, fruit r...

Delimitation of species boundaries within the fungal genus Diaporthe has been challenging, but the analyses of combined multilocus DNA sequences has become an important tool to infer phylogenetic relationships and to circumscribe species. However, analyses of congruence between individual gene genealogies and the application of the genealogical con...

The genus Diaporthe is a cosmopolitan group of fungi that includes important plant pathogens, endophytes and saprobes with the ability to colonize a wide range of plant hosts. Pathogenic Diaporthe species are often reported to cause symptoms like dieback, stem canker, leaf spots, fruit rots and seed decay resulting in important economic losses on s...

Fungal communities associated with macroalgae remain largely unexplored. To characterize algicolous fungal communities using culture dependent methods, macroalgae were collected from different sampling sites in the Ria de Aveiro estuary, Portugal. From a collection of 486 isolates that were obtained, 213 representative isolates were selected throug...

Pine pitch canker (PPC), caused by Fusarium circinatum Nirenberg & O’Donnell, represents an important threat to conifer forests worldwide, being associated with significant economic losses. Although essential to develop disease mitigation strategies, little research focused on host susceptibility/resistance mechanisms has been conducted. We aimed t...

Botryosphaeria dieback caused by several Botryosphaeriaceae species is one of the most important grapevine trunk diseases affecting vineyards worldwide. These fungi cause wedge-shaped perennial cankers and black streaking of the wood and have also been associated with intervein leaf chlorosis, dried or mummified berries, and eventually, the death o...

Botryosphaeriaceous fungi associated with holm (Q. ilex) and cork (Q. suber) oak trees exhibiting dieback symptoms and cankers in Algeria, were sampled in twelve regions with different ecological conditions. Based on phylogenetic analyses of ITS and tef1-α loci, 13 species were identified. Three species (Diplodia corticola, Dothiorella iberica and...

A full list of Botryosphaeriaceae species isolated in Portugal

Fungi in the family Botryosphaeriaceae are known as pathogens of diverse woody hosts, including forest tree species. Although, several of these fungi have been described in different forest hosts in Portugal, their diversity and distribution is still poorly understood. A survey was conducted across the country to identify Botryosphaeriaceae species...

Fungi are ubiquitous organisms with a wide distribution in almost all ecosystems, including marine environments. Coastal and estuarine ecosystems remain poorly unexplored as fungal habitats, potentially harbouring a hidden diversity with important ecological roles. During an extensive survey of marine fungi in coastal and estuarine Portuguese envir...

The effect of γ-aminobutyric acid (GABA) on the metabolome of two strains of Lasiodiplodia theobromae isolated from grapevine that hold a different degree of virulence to the host plant (LA-SOL3 (more virulent), LA-SV1 (less virulent)) was investigated. The culture filtrates and crude extracts from the two strains grown in the presence and absence...

Lasiodiplodia theobromae is a plant pathogenic fungus from the family Botryosphaeriaceae that is commonly found in tropical and subtropical regions. It has been associated with many hosts, causing diverse diseases and being responsible for serious damages on economically important crops. A diverse array of bioactive low molecular weight compounds h...

Novel species of fungi described in this study include those from various countries as follows: Antarctica, Cladosporium arenosum from marine sediment sand. Argentina, Kosmimatamyces alatophylus (incl. Kosmimatamyces gen. nov.) from soil. Australia, Aspergillus banksianus, Aspergillus kumbius, Aspergillus luteorubrus, Aspergillus malvicolor and Asp...

A collection of fungal isolates obtained from crop plants, specifically grapevine and blueberry, in Peru were characterised through morphological and DNA sequence analyses of the nuclear ribosomal internal transcribed spacer (ITS), beta-tubulin (tub2) and translation elongation factor 1-alpha (tef-1α) regions. Isolates produced monomorphic and dimo...

Several Botryosphaeriaceae species are known to occur worldwide, causing dieback, can-ker and fruit rot on various hosts. Surveys conducted in ten commercial citrus orchards in the northern region of Algeria revealed five species of Botryosphaeriaceae belonging to three genera associated with diseased trees. Morphological and cultural characteristi...

Several Botryosphaeriaceae species are known to occur worldwide, causing dieback, canker and fruit rot on various hosts. Surveys conducted in ten commercial citrus orchards in the northern region of Algeria revealed five species of Botryosphaeriaceae belonging to three genera associated with diseased trees. Morphological and cultural characteristic...

The production of blueberry in Peru has been increasing over the last years. Dieback and stem blight of plants are the most prominent disease symptoms observed in blueberry orchards. This study evaluated the diversity and pathogenicity of Lasiodiplodia and Neopestalotiopsis species associated with dieback of blueberry plants in Peru. A collection o...

Neofusicoccum parvum is a fungal pathogen associated with a wide range of plant hosts. Despite being widely studied, the molecular mechanism of infection of N. parvum is still far from being understood. Analysis of N. parvum genome lead to the identification of six putative genes encoding necrosis and ethylene-inducing proteins (NLPs). The sequence...

Microbially induced calcification is an ancient, community-driven mineralisation process that produces different types of microbialites. Symbiolites are photosynthesis-induced microbialites, formed by calcifying co-cultures of dinoflagellates from the family Symbiodiniaceae and bacteria. Symbiolites encase the calcifying community as endolithic cel...

In the course of investigations on the role of secondary metabolites in plant-microbe interactions, the production of secondary metabolites by Macrophomina phaseolina isolates from Eucalyptus globulus, was studied. This fungus is responsible for several plant diseases which affect crop productivity and industry. Although secondary metabolites may p...

Blueberry, an increasingly cultivated fruit crop in Portugal, is known to be susceptible to twig blight and dieback caused by species of Diaporthe. The diversity of Diaporthe species associated with symptomatic and asymptomatic Vaccinium corymbosum plants in Portugal was assessed. A multilocus sequence analysis of the rDNA internal transcribed spac...

Botryosphaeriaceae fungi are phytopathogens and human opportunists. The influence of temperature on the phytotoxicity and cytotoxicity of culture filtrates of five Botryosphaeriaceae species was investigated. All culture filtrates of fungi grown at 25 °C were phytotoxic: symptoms were evaluated based on visual inspection of necrosis areas and on th...

Freshwaters are constantly facing ecosystem functioning alterations and loss of biodiversity driven by multiple anthropogenic and natural stressors, that by acting simultaneously create complex interactions, affecting the quantity and quality of water resources. Stream biofilms are complex communities, which are exposed to these alterations and, in...

Novel species of fungi described in this study include those from various countries as follows: Antarctica , Apenidiella antarctica from permafrost, Cladosporium fildesense from an unidentified marine sponge. Argentina , Geastrum wrightii on humus in mixed forest. Australia , Golovinomyces glandulariae on Glandularia aristigera , Neoanungitea eucal...

Macroalgae of the genera Fucus, Ulva, and Enteromorpha are typically abundant in estuaries. Endophytic fungi may have beneficial effects on the hosts affecting their ability to cope with stress. They are also a source of biologically active compounds. However, little is known about the endo-phytic fungi that colonize these macroalgae. Endophytic is...

Lasiodiplodia theobromae is one of the most aggressive agents of the grapevine trunk disease Botryosphaeria dieback. Through a dual RNA-sequencing approach, this study aimed to give a broader perspective on the infection strategy deployed by L. theobromae, while understanding grapevine response. Approximately 0.05% and 90% of the reads were mapped...

A collection of fungi was isolated from macroalgae of the genera Gracilaria, Enteromorpha and Ulva in the estuary Ria de Aveiro in Portugal. These isolates were characterized through a multilocus phylogeny based on ITS region of the ribosomal DNA, beta-tubulin (tub2) and translation elongation factor 1 alpha (tef1-α) sequences, in conjunction with...

Blueberry (Vaccinium corymbosum) cultivation in Portugal has been growing considerably in the last decade, making it a highly profitable fruit crop. Species of Botryosphaeriaceae are relevant pathogens of blueberry causing stem blight and dieback. In this study a survey was carried out in blueberry orchards in the centre region of Portugal in order...

Lasiodiplodia theobromae (Botryosphaeriaceae, Ascomycota) is a plant pathogen and human opportunist whose pathogenicity is modulated by temperature. The molecular effects of temperature on L. theobromae are mostly unknown, so we used a multi-omics approach to understand how temperature affects the molecular mechanisms of pathogenicity. The genome o...

Verrucoconiothyrium ambiguum sp. nov., a novel species isolated from sea water, and affiliation of the genus Verrucoconiothyrium to the family Didymellaceae Abstract The genus Verrucoconiothyrium was erected to accommodate Coniothyrium-like species with verruculose conidia. So far, it includes only four species, which have been found in association...

Pine pitch canker (PPC), caused by Fusarium circinatum, affects Pinus species worldwide. Although no effective solutions have yet been found to control it, there is a growing interest in using biological control agents (BCA) such as Trichoderma to avoid the application of chemical‐based products. Using species with an increasing level of susceptibi...

Neocamarosporium species are typically halotolerant, being commonly found in saline environments like saline water, hypersaline soils and especially in association with halophytes. Several isolates were obtained from saline water, dead leaves of the seaweed Zostera noltii and live tissues of the halophyte Halimione portulacoides. Phylogenetic analy...

Grapevine trunk disease (GTD) fungi are highly diverse and species recognition is largely dependent on multi-locus DNA phylogenetic analyses. The DNA sequences frequently used for this multi-locus approach, include the internal transcribed spacer region (ITS1-5.8S-ITS2) of the ribosomal DNA and fragments of the translation elongation factor 1-α (TE...