Antonio Desimone

Scuola Internazionale Superiore di Studi Avanzati di Trieste | SISSA · Applied Mathematics Group

Euglenoids (Euglenida) are unicellular flagellates possessing exceptionally wide geographical and ecological distribution. Euglenoids combine a biotechnological potential with a unique position in the eukaryotic tree of life. In large part these microbes owe this success to diverse genetics including secondary endosymbiosis and likely additional so...

Navigation problems for a model bio-inspired micro-swimmer, consisting of a cargo head and propelled by multiple rotating flagella or propellers and swimming at low Reynolds numbers, are formulated and solved. We consider both the direct problem, namely, predicting velocity and trajectories of the swimmer as a consequence of prescribed rotation rat...

The EU-funded FET Proactive Environmental Intelligence project "I-Seed"(Grant Agreement n. 101017940, https://www.iseedproject.eu/) targets towards the development of a radically simplified and environmentally friendly approach for environmental monitoring. Specifically, I-Seed aims at developing a new generation of self-deployable and biodegradabl...

Adherent cells seeded on substrates spread and evolve their morphology while simultaneously displaying motility. Phenomena such as contact guidance, viz. the alignment of cells on patterned substrates, are strongly linked to the coupling of morphological evolution with motility. Here, we employ a recently developed statistical thermodynamics framew...

Objective. Intrafascicular peripheral nerve implants are key components in the development of bidirectional neuroprostheses such as touch-enabled bionic limbs for amputees. However, the durability of such interfaces is hindered by the immune response following the implantation. Among the causes linked to such reaction, the mechanical mismatch betwe...

In this work, an innovative model is proposed as a design tool to predict both the inner and outer radii in rolled structures based on polydimethylsiloxane bilayers. The model represents an improvement of Timoshenko’s formula taking into account the friction arising from contacts between layers arising from rolling by more than one turn, hence broa...

The control of shape in active structures is a key problem for the realization of smart sensors and actuators, which often draw inspiration from natural systems. In this context, slender structures, such as thin plates, have been studied as a relevant example of shape morphing systems where curvature is generated by in-plane incompatibilities. In p...

In the study of micro-swimmers, both artificial and biological ones, many-query problems arise naturally. Even with the use of advanced high performance computing (HPC), it is not possible to solve this kind of problems in an acceptable amount of time. Various approximations of the Stokes equation have been considered in the past to ease such compu...

teaserEuglenoids show great promise to benefit our world; as biofuels, environmental remediators, anti-cancer agents, robotics design simulators and food nutritional agents, but the absence of reference genomes currently limit realizing these benefits. The Euglena International Network (EIN) (https://euglenanetwork.org/) aims to address these chall...

We review ideas emerged in the mechanics literature in the last fifty years concerning the problem of controlling shape. The central notion is the multiplicative decomposition of the gradient of the visible deformation into elastic and inelastic parts. We show that, when applied to analyze muscle contraction, this notion is useful to understand the...

A constitutive material law for linear viscoelasticity in the time domain is presented. It does not only allow for anisotropic elastic behavior but also for anisotropic (i.e. direction dependent) relaxation response. Under the assumption of thermo–rheological simple material behavior, the model is capable to account for direction dependent time–tem...

p>Understanding and monitoring natural ecosystems is necessary for an efficient implementation of sustainable strategies to tackle climate and environmental-related challenges, such as: protect and improve the quality of air, water, and soil; safeguard species biodiversity; and effectively manage natural resources. A longstanding challenge for envi...

Adherent cells seeded on substrates spread and evolve their morphology while simultaneously displaying motility. Phenomena such as contact guidance viz. the alignment of cells on patterned substrates, are strongly linked to the coupling of morphological evolution with motility. Here we employ a recently developed statistical thermodynamics framewor...

Growing plant shoots exhibit spontaneous oscillations that Darwin observed, and termed ‘circumnutations’. Recently, they have received renewed attention for the design and optimal actuation of bioinspired robotic devices. We discuss a possible interpretation of these spontaneous oscillations as a Hopf-type bifurcation in a growing morphoelastic rod...

We propose and discuss a model for flagellar mechanics in Euglena gracilis. We show that the peculiar non-planar shapes of its beating flagellum, dubbed 'spinning lasso', arise from the mechanical interactions between two of its inner components, namely, the axoneme and the paraflagellar rod. The spontaneous shape of the axoneme and the resting sha...

We present a three-dimensional morphoelastic rod model capable to describe the morphogenesis of growing plant shoots driven by differential growth. We discuss the evolution laws for endogenous oscillators, straightening mechanisms, and reorientations to directional cues, such as gravitropic reactions governed by the avalanche dynamics of statoliths...

While it is commonly observed that the shape dynamics of mammalian cells can undergo large random fluctuations, theoretical models aiming at capturing cell mechanics often focus on the deterministic part of the motion. In this paper, we present a framework that couples an active gel model of the cell mechanical scaffold with the complex cell metabo...

Nature and technology often adopt structures that can be described as tubular helical assemblies. However, the role and mechanisms of these structures remain elusive. In this paper, we study the mechanical response under compression and extension of a tubular assembly composed of 8 helical Kirchhoff rods, arranged in pairs with opposite chirality a...

Mechanical instabilities can be exploited to design innovative structures, able to change their shape in the presence of external stimuli. In this work, we derive a mathematical model of an elastic beam subjected to an axial force and constrained to smoothly slide along a rigid support, where the distance between the rod midline and the constraint...

Euglena gracilis is a unicellular organism that swims by beating a single anterior flagellum. We study the nonplanar waveforms spanned by the flagellum during a swimming stroke and the three-dimensional flows that they generate in the surrounding fluid. Starting from a small set of time-indexed images obtained by optical microscopy on a swimming Eu...

Mechanical instabilities can be exploited to design innovative structures, able to change their shape in the presence of external stimuli. In this work, we derive a mathematical model of an elastic beam subjected to an axial force and constrained to smoothly slide along a rigid support, where the distance between the rod midline and the constraint...

Many active materials used in shape‐morphing are capable of stretching or contracting along a director field. In article number 2004515, Benoît Roman and co‐workers show that texturing this field in zigzag patterns provides an extended family of deformation, opening a larger parameter space for shape control. This concept can be applied to any anis...

Many active materials used in shape‐morphing respond to an external stimulus by stretching or contracting along a director field. The programming of such actuators remains complex because of the single degree of freedom (the orientation) in local actuation. Here, texturing this field in zigzag patterns is shown to provide an extended family of biax...

Euglena gracilis is a unicellular organism that swims by beating a single anterior flagellum. We study the nonplanar waveforms spanned by the flagellum during a swimming stroke, and the three-dimensional flows that they generate in the surrounding fluid. Starting from a small set of time-indexed images obtained by optical microscopy on a swimming E...

A bstract We present a three-dimensional morphoelastic rod model capable to describe the morphogenesis of growing plant shoots, as driven by differential growth at the tip. We discuss the evolution laws for endogenous oscillators, straightening mechanisms and reorientations to directional cues, such as phototropic responses to a far light source an...

Mathematical modeling and quantitative study of biological motility is producing new biophysical insight and opportunities for discoveries at the level of both fundamental science and technology. One example is the elucidation of how complex behavior of simple organisms emerges from specific (and sophisticated) body architectures, and how this is a...

In the study of micro-swimmers, both artificial and biological ones, many-query problems arise naturally. Even with the use of advanced high performance computing (HPC), it is not possible to solve this kind of problems in an acceptable amount of time. Various approximations of the Stokes equation have been considered in the past to ease such compu...

Some euglenids, a family of aquatic unicellular organisms, can develop highly concerted, large-amplitude peristaltic body deformations. This remarkable behaviour has been known for centuries. Yet, its function remains controversial, and is even viewed as a functionless ancestral vestige. Here, by examining swimming Euglena gracilis in environments...

This paper deals with a concept for a reconfigurable structure bio-inspired by the cell wall architecture of euglenids, a family of unicellular protists, and based on the relative sliding of adjacent strips. Uniform sliding turns a cylinder resulting from the assembly of straight and parallel strips into a cylinder of smaller height and larger radi...

Hydrothermal growth of ZnO nanorods has been widely used for the development of tactile sensors, with the aid of ZnO seed layers, favoring the growth of dense and vertically aligned nanorods. However, seed layers represent an additional fabrication step in the sensor design. In this study, a seedless hydrothermal growth of ZnO nanorods was carried...

Activity and autonomous motion are fundamental in living and engineering systems. This has stimulated the new field of ‘active matter’ in recent years, which focuses on the physical aspects of propulsion mechanisms, and on motility-induced emergent collective behavior of a larger number of identical agents. The scale of agents ranges from nanomotor...

Polymer gel plates may be programmed to morph into three-dimensional configurations upon swelling. An effective strategy to control such shape transformations consists in patterning the in-plane cross-linking density of the polymer network to realize non-homogeneous swelling. In general, one needs to solve an inverse problem to determine the shear...

In this work, we study the mechanics of metamaterial sheets inspired by the pellicle of Euglenids. They are composed of interlocking elastic rods which can freely slide along their edges. We characterize the kinematics and the mechanics of these structures using the special Cosserat theory of rods and by assuming axisymmetric deformations of the tu...

Liquid crystal elastomers (LCEs) are an attractive platform for dynamic shape‐morphing due to their ability to rapidly undergo large deformations. While recent work has focused on patterning the director orientation field to achieve desired target shapes, this strategy cannot be generalized to material systems where high‐resolution surface alignmen...

We propose and discuss a model for flagellar mechanics in Euglena gracilis. We show that the peculiar non-planar shapes of its beating flagellum, dubbed "spinning lasso", arise from the mechanical interactions between two of its inner components, namely, the axoneme and the paraflagellar rod. The spontaneous shape of the axoneme and the resting sha...

In this work, we study the mechanics of metamaterial sheets inspired by the pellicle of Euglenids. They are composed of interlocking elastic rods which can freely slide along their edges. We characterize the kinematics and the mechanics of these structures using the special Cosserat theory of rods and by assuming axisymmetric deformations of the tu...

Mathematical modeling and quantitative study of biological motility (in particular, of motility at microscopic scales) is producing new biophysical insight and is offering opportunities for new discoveries at the level of both fundamental science and technology. These range from the explanation of how complex behavior at the level of a single organ...

This book presents the state of the art in mathematical research on modelling the mechanics of biological systems – a science at the intersection between biology, mechanics and mathematics known as mechanobiology. The book gathers comprehensive surveys of the most significant areas of mechanobiology: cell motility and locomotion by shape control (A...

We discuss some recent results on biological and bio-inspired morphing, and use them to identify promising research directions for the future. In particular, we consider issues related to morphing at microscopic scales inspired by unicellular organisms. We focus on broad conceptual principles and, in particular, on morphing approaches based on the...

One of the most remarkable differences between classical engineering materials and living matter is the ability of the latter to grow and remodel in response to diverse stimuli. The mechanical behaviour of living matter is governed not only by an elastic or viscoelastic response to loading on short time scales up to several minutes, but also by oft...

Objective: The quest for an intuitive and physiologically appropriate human-machine interface for the control of dexterous prostheses is far from being completed. To control a hand prosthesis, a possible approach could consist in using information related to the displacement of forearm muscles of an amputee during contraction. We recently proposed...

The effect of elastic deformations induced by gravity loading on the active circumnutation movements of growing plant shoots is investigated. We consider first a discrete model (a gravitropic spring-pendulum system) and then a continuous rod model which is analyzed both analytically (under the assumption of small deformations) and numerically (in t...

In a seminal paper published in 1951, Taylor studied the interactions between a viscous fluid and an immersed flat sheet which is subjected to a travelling wave of transversal displacement. The net reaction of the fluid over the sheet turned out to be a force in the direction of the wave phase-speed. This effect is a key mechanism for the swimming...

Some euglenids, a family of aquatic unicellular organisms, can develop highly concerted, large-amplitude peristaltic body deformations. This remarkable behaviour has been known for centuries. Yet, its function remains controversial, and is even viewed as a functionless ancestral vestige. Here, by examining swimming Euglena gracilis in environments...

Micron-scale swimmers move in the realm of negligible inertia, dominated by viscous drag forces. Actuation of artificial micro-robotic swimmers for various biomedical applications is inspired by natural propulsion mechanisms of swimming microorganisms such as bacteria and sperm cells, which perform periodic strokes of waving a slender tail. Finding...

Contact guidance—the widely known phenomenon of cell alignment induced by anisotropic environmental features—is an essential step in the organization of adherent cells, but the mechanisms by which cells achieve this orientational ordering remain unclear. Here, we seeded myofibroblasts on substrates micropatterned with stripes of fibronectin and obs...

Contact guidance- the widely-known phenomenon of cell alignment induced by anisotropic environmental features is an essential step in the organization of adherent cells, but the mechanisms by which cells achieve this orientational ordering remain unclear. Here we seeded myofibroblasts on substrates micropatterned with stripes of fibronectin and obs...

We discuss self-folding of a thin sheet by using patterned hydrogel bilayers, which act as hinges connecting flat faces. Folding is actuated by heterogeneous swelling due to different cross-linking densities of the polymer network in the two layers. Our analysis is based on a dimensionally reduced plate model, obtained by applying a recently develo...

This paper deals with a concept for a reconfigurable structure bio-inspired by the cell wall architecture of euglenids, a family of unicellular protists, and based on the relative sliding of adjacent strips. Uniform sliding turns a cylinder resulting from the assembly of straight and parallel strips into a cylinder of smaller height and larger radi...

Peristalsis, i.e., a motion pattern arising from the propagation of muscle contraction and expansion waves along the body, is a common locomotion strategy for limbless animals. Mimicking peristalsis in bio-inspired robots has attracted considerable attention in the literature. It has recently been observed that maximal velocity in a metameric earth...

Basement membranes (BMs) are thin layers of condensed extracellular matrix proteins serving as permeability filters, cellular anchoring sites, and barriers against cancer cell invasion. It is believed that their biomechanical properties play a crucial role in determining cellular behavior and response, especially in mechanically active tissues like...

Some recent results on biological and bio-inspired swimming at microscopic scales are reviewed, and used to identify promising research directions for the future. We focus on broad conceptual principles such as looping in the space of shapes, loss of controllability of systems in which shape is only partially controlled, and steering by modulating...

Interest in the design of bioinspired robotic microswimmers is growing rapidly, motivated by the spectacular capabilities of their unicellular biological templates. Predicting the swimming speed and efficiency of such devices in a reliable way is essential for their rational design, and to optimize their performance. The hydrodynamic simulations ne...