Antoine Fouquet

French National Centre for Scientific Research | CNRS

The highlands of the Guiana Shield (Pantepui) in northern South America harbor a unique fauna and flora. However, this diversity remains poorly documented, as many Pantepui massifs remain little explored or unexplored, mainly because their access is very challenging. Considering amphibians, 11 genera are endemic or sub-endemic to Pantepui, and one...

The day gecko Phelsuma borbonica displays marked differences in coloration and occupies a variety of habitats across its very small range on the volcanic oceanic island of Reunion in the southwestern Indian Ocean. Such differences might reflect geographic and ecological divergence and thus be associated with an underlying genetic differentiation. W...

The accumulation of studies delimiting species in Amazonia has not only shed light on the patterns of its outstanding species richness but also allowed a better understanding of the processes of diversification within this immense region. Nevertheless, vast knowledge gaps remain even for prominent anuran species complexes, such as the Rhinella marg...

Based on field surveys undertaken in two conservation areas, we report new distribution data of Hyalinobatrachium taylori (Goin, 1968) and H. tricolor Castroviejo-Fisher, Vilà, Ayarzagüena, Blanc & Ernst, 2011 from the state of Amapá, northern Brazil. We provide acoustic data from these new populations. These are the first records of H. taylori and...

Anurans are one of the most diverse vertebrate groups, particularly in Amazonia, where species richness exceeds that of anywhere else. Amazonian frogs belong to three main lineages (Hyloidea, Microhylidae and Pipidae), each of which diversified during the Cenozoic. However, due to the virtual absence of an anuran fossil record in that area, the evo...

New Guinea is the largest tropical island in the world and hosts immense endemic biodiversity. However, our understanding of how the gradual emergence of the terrestrial ecosystems of the island over the last 40 Myr has generated this biological richness is hampered by poorly documented species diversity and distributions. Here, we address both the...

ARTICLE Ongoing harlequin toad declines suggest the amphibian extinction crisis is still an emergency Biodiversity loss is extreme in amphibians. Despite ongoing conservation action, it is difficult to determine where we stand in overcoming their extinction crisis. Among the most threatened amphibians are the 131 Neotropical harlequin toads. Many o...

The iconic mountains of the Pantepui biogeographical region host many early-diverging endemic animal and plant lineages, concurring with Conan Doyle’s novel about an ancient “Lost World”. While this is the case of several frog lineages, others appear to have more recent origins, adding to the controversy around the diversi- fication processes in th...

Systematic assessments of species extinction risk at regular intervals are necessary for informing conservation action1,2. Ongoing developments in taxonomy, threatening processes and research further underscore the need for reassessment3,4. Here we report the findings of the second Global Amphibian Assessment, evaluating 8,011 species for the Inter...

Systematic assessments of species extinction risk at regular intervals are necessary for informing conservation action1,2. Ongoing developments in taxonomy, threatening processes and research further underscore the need for reassessment3,4. Here we report the findings of the second Global Amphibian Assessment, evaluating 8,011 species for the Inter...

We reassessed the taxonomic status of lizards of the Iphisa elegans complex, a monotypic genus of Gymnophthalmidae, based on the congruence between mitochondrial DNA (Cytb) and nuclear DNA (c-mos and prlr) and characters of internal and external morphology, both quantitative and qualitative (meristic, morphometric and hemipenial), throughout its wi...

The white-sand ecosystems in the Solimões-Negro Interfluve are among the less studied in Amazonia. Recent herpetological surveys conducted west of Manaus, Brazil (central Amazonia) indicate that white-sand forests host a unique anuran fauna comprising habitat specialized and endemic species. In the present study we describe a new species of rain fr...

The actual diversity of anurans occurring in Amazonia remains only partly described. This is notably the case of the species of the genus Allobates despite a fast rate of species description in this genus during the last decade. This increasing taxonomic effort has been particularly facilitated by the availability of DNA sequences throughout the re...

An evolutionary paradox on threadsnakes: Phenotypic and molecular evidence reveal a new and remarkably polymorphic species of Siagonodon Abstract Threadsnakes are known for their conserved external morphology and historically controversial systematics, challenging taxo-nomic, biogeographic and evolutionary researches in these fields. Recent morphol...

Anthropogenic biodiversity loss is extreme in amphibians. Despite ongoing conservation action, it is difficult to determine where we stand in overcoming their extinction crisis 1,2. Extinction risk is not equally distributed across amphibians 3-5. Among the most threatened amphibians are the 131 Neotropical harlequin toads (Atelopus), many of which...

Many chemically-defended/aposematic species rely on diet for sequestering the toxins with which they defend themselves. This dietary acquisition can lead to variable chemical defenses across space, as the community composition of chemical sources is likely to vary across the range of (an aposematic) species. We characterized the alkaloid content of...

Supplemental material for this article can be accessed here: http://dx.doi.org/10.1080/14772000.2022.2089269.

The diversification processes underlying why Amazonia hosts the most species-rich vertebrate fauna on earth remain poorly understood. We studied the spatio-temporal diversification of a tree frog clade distributed throughout Amazonia (Anura: Hylidae: Osteocephalus , Tepuihyla , and Dryaderces ) and tested the hypothesis that Miocene mega wetlands l...

Pristimantis is already the most speciose genus among vertebrates, yet the current number of species remains largely underestimated. A member of the P. unistrigatus species group from the Guiana Shield has been historically misidentified as P. ockendeni , a species described from southern Peru. We combined mitochondrial (16S and COI) and nuclear (R...

The existence of an unnamed (candidate) species from French Guiana and the state of Amapá (Brazil) closely related to Chiasmocleis haddadi has been hypothesized in previous DNA-based studies. With an integrative use of genetic, morphological and acoustic data we confirm that these populations are indeed distinct from C. haddadi and all other known...

Determining the relative importance of dispersal and vicariance events across neotropical regions is a major goal in biogeography. These events are thought to be related to important landscape changes, notably the transition of Amazonia toward its modern hydrological configuration ca. 10 million years ago. We investigated the spatio-temporal contex...

Many anuran species remain to be formally named and described in Amazonia, notably in the Guiana Shield, and particularly in megadiverse groups such as Pristimantis. Several species in the Guiana Shield region have been confused with Pristi- mantis marmoratus and P. ockendeni. Hylodes grandoculis, a taxon previously placed in the synonymy of P. mar...

We report the first collected specimen of Trachycephalus hadroceps (Duellman & Hoogmoed, 1992) from Brazil. This record, from the municipality of Porto Grande in the state of Amapá, expands the geographic distribution of this species by approximately 230 km south-southeast from the nearest previously known locality at Camopi, French Guiana. We also...

Major historical landscape changes have left significant signatures on species diversification. However, how these changes have affected the build-up and maintenance of Amazonia’s megadiversity continues to be debated. Here, we addressed this issue by focusing on the evolutionary history of a pan-Amazonian toad genus that has diversified throughout...

The genus Pipa is a species-poor clade of Neotropical frogs and one of the most bizarre-looking due to many highly derived anatomical traits related to their fully aquatic lifestyle. With their African relatives, they form the Pipidae family, which has attracted much attention, especially regarding its anatomy, reproductive biology, paleontology an...

Abstract Atractus badius has a long and controversial nomenclatural history due to both its antiquity and the brevity of its original description. This species was described based on two syntypes from Java. Later, a lectotype was designated and the distribution range restricted to the Guiana Shield. Although this species has been repeatedly recorde...

Historical variations in climate and landscape configuration are the main aspects known to generate and maintain diversity. Taxa associated with open habitats within broader forest contexts are often overlooked in studies of Neotropical biogeography. We investigated the evolutionary and demographic history of lizards in the Cnemidophorus lemniscatu...

Nyctimystes infrafrenatus Günther is a widespread frog species distributed across northern Australia, New Guinea, Bismarck archipelago and in the eastern part of Indonesia archipelago where the species thus encompasses two biogeographic regions, Papua and Wallacea. We evaluated phylogenetic relationships among the populations from Papua and Molucca...

Boana xerophylla is a common treefrog widely distributed in northern Brazil, Colombia, French Guiana, Guyana, Panama, Suriname, Trinidad and Tobago, and Venezuela. A recent study found molecular, acoustic, and morphometric differences between the populations located on opposite sides of the Orinoco River. Here, we carry out an updated molecular phy...

Amazonia harbours a vast biotic and ecological diversity, enabling investigation of the effects of microevolutionary processes and environmental variation on species diversification. Integrative approaches combining phenotypic and genetic variation can improve our knowledge on diversification processes in megadiverse regions. Here, we investigate t...

The African reedfrog taxon Alexteroon consists of only three described species with rather restricted geographical ranges. Although the assignment to a distinct genus is supported by multiple evidence, its position within the larger African hyperoliid radiation has been disputed. Available molecular data are scarce and the geographic records are fe...

The New World genus Micrurus contains more than 80 currently recognized species of venomous coral snakes. The taxonomy of the South American M. lemniscatus complex is controversial. Within this group, M. lemniscatus, M. carvalhoi, M. diutius, M. frontifasciatus, and M. helleri have been treated either as distinct species or subspecies of M. lemnisc...

Biodiversity knowledge is widely heterogeneous across the Earth’s biomes. Some areas, due to their remoteness and difficult access, present large taxonomic knowledge gaps. Mostly located in the tropics, these areas have frequently experienced a fast development of anthropogenic activities during the last decades and are therefore of high conservati...

The genus Synapturanus includes three nominal species of fossorial Amazonian frogs. A previous study combining molecular, morphological and acoustic data suggested that there may be six times more species than currently recognized. Herein we describe and name three of these new species and compare their osteology. Synapturanus zombie sp. nov. occur...

Based on field surveys undertaken in two conservation areas, we report new distribution data of Hyalinobatrachium taylori (Goin, 1968) and H. tricolor Castroviejo-Fisher, Vilà, Ayarzagüena, Blanc & Ernst, 2011 from the state of Amapá, northern Brazil. We provide acoustic data from these new populations. These are the first records of H. taylori and...

The outstanding species richness of Amazonia has fascinated biologists for centuries. However, the records of actual numbers and distribution of species forming its ecosystems are so incomplete that the understanding of the historical causes and regional determinants of this diversity remain speculative. Anuran clades have repeatedly been documente...

A large proportion of the biodiversity of Amazonia, one of the most diverse rainforest areas in the world, is yet to be formally described. One such case is the Neotropical frog genus Adenomera. We here evaluate the species richness and historical biogeography of the Adenomera heyeri clade by integrating molecular phylogenetic and species delimitat...

The outstanding biodiversity of the Guiana Shield has raised many questions about its origins and evolution. Frogs of the genera Adelastes, Otophryne and Synapturanus form an ancient lineage distributed mostly across this region. These genera display strikingly disparate morphologies and life-history traits. Notably, Synapturanus is conspicuously a...

Two species of Alopoglossus (A. angulatus and A. meloi) were recognized to occur in the Guiana Shield lowlands, northeastern Amazonia. A third group of populations forming a distinct genetic lineage related to Alopoglossus avilapiresae was recently documented in the region. The Guiana Shield lowlands area also encompasses the type locality of Alopo...

We report here the first mention on a young adult of Physalaemus aff. ephippifer (Anura : Leptodactylidae) discovered in January 2016 on the foothills of Mount Itoupé in French Guiana. This discovery extends its range 250 km from the nearest known population and suggests that the species may be more widespread in French Guiana.

In tropical regions, some anuran species breed "explosively", reproducing in massive and highly diverse aggregations during a brief window of time. These aggregations can serve as acoustic beacons, attracting other anurans toward seasonal ponds. We hypothesize that conspecific and heterospecific calls play a role in navigation toward ponds and sync...

Aim We investigate the spatiotemporal context of the diversification of Allobates, a widespread genus of Amazonian frogs with high species diversity particularly in western Amazonia. We tested if that diversity originated in situ or through repeated dispersals from other Amazonian areas and if this diversification took place during or after the Peb...

Anomaloglossus is a species-rich genus of frogs endemic to the Guiana Shield that still harbours several unnamed species. According to a recent integrative taxonomic survey, the A. stepheni species group includes five valid nominal species and at least four putatively unnamed species, two in Brazil and two in Suriname. In this paper, we describe th...

The complete mitogenome of the lizard Iphisa elegans Gray, 1851 was sequenced using a shotgun approach on an Illumina HiSeq 3000 platform, providing the first mitogenome for Gymnophthalmidae. The genome was 18,622 bp long, with 13 protein-coding genes, two rRNA (12S and 16S), and 22 tRNA, as well as the control region. A maximum likelihood phylogen...

Aim The Neotropics currently host outstanding levels of species richness, with one‐third of the global tetrapod species. The underlying causes of these extraordinary levels of biodiversity are a topic debated in evolutionary ecology, but the main processes at work remain elusive. Location Neotropics. Time period Cenozoic and Mesozoic. Major taxa...

Aim: Mapping Amazonian biodiversity accurately is a major challenge for integrated conservation strategies and to study its origins. However, species boundaries and their respective distribution are notoriously inaccurate in this region. Here, we generated a georeferenced database of short mtDNA sequences from Amazonian frogs, revised the species r...

Taxonomists always have had intense discussions about how species should be delimited and recently many studies have used integrative approaches by combining molecular, morphological, and bioacoustic data. Although these studies are paramount for understanding species diversity, few of them actually formalize species delimitations to the final step...

The systematics of Leptotyphlopidae is historically controversial mostly due to their conserved external morphology in comparison with other snakes. However, recent studies have stressed that anatomical data might be informative for clarifying the leptotyphlopid taxonomy and evolution. We erect a new genus to accommodate Leptotyphlops collaris base...

We undertook a 15-day survey of the amphibian fauna of the Mitaraka massif in southwestern French Guiana during the rainy season. We detected 56 species (12 species detected for the first time), including six only thanks to their calls. Thirteen additional species were previously detected from nearby sites. The total number of species occurring in...

Aposematic organisms couple conspicuous warning signals with a secondary defense to deter predators from attacking. Novel signals of aposematic prey are expected to be selected against due to positive frequency-dependent selection. How, then, can novel phenotypes persist after they arise, and why do so many aposematic species exhibit intrapopulatio...

Background: Anurans largely rely on acoustic communication for sexual selection and reproduction. While multiple studies have focused on the calling activity patterns of prolonged breeding assemblages, species that concentrate their reproduction in short-time windows, explosive breeders, are still largely unknown, probably because of their ephemer...

The Guiana Shield harbours one of the best preserved and largest extents of tropical forest on Earth and an immense biodiversity. The herpetofauna of this region remains poorly known. The species-rich snake genus Atractus contains ∼140 species, many with complicated taxonomic histories, including A. schach. Examination of specimens in museums and n...

Anomaloglossus is a species-rich genus of frogs endemic to the Guiana Shield that still harbors several unnamed species. Within the A. stepheni species group (which includes four valid nominal species), A. baeobatrachus has an uncertain taxonomic status, notably because the holotype was an unvouchered specimen depicted in a popular journal. Another...

A third species of Brasilotyphlus, a siphonopid caecilian, is described based on six specimens from two twin mountains in Roraima state, northern Brazil. Brasilotyphlus dubium sp. nov. differs from all other congeners in having a combination of 123–129 primary annuli and 9–16 secondary annular grooves. The first molecular data were generated and an...

The advent of genomics in phylogenetics and population genetics strengthened the perception that conflicts among gene trees are frequent and often due to introgression. However, hybridization occurs mostly among species that exhibit little phenotypic differentiation. A recent study delineating species in Anomaloglossus, a frog genus endemic to the...

The description of Amazophrynella minuta was published in 1941 by the Swedish naturalist Douglas Melin based on material from Taracuá (Amazonas state, Brazil). This description was very brief and based on the morphology of few specimens with diagnostic characters and color variation not well defined. Moreover, the type series is currently in poor s...

Amphibians are probably the most vulnerable group to climate change and climate-change associate diseases. This ongoing biodiversity crisis makes it thus imperative to improve the taxonomy of anurans in biodiverse but understudied areas such as Amazonia. In this study, we applied robust integrative taxonomic methods combining genetic (mitochondrial...

DFA and PCA analyses of morphometric and environmental variables Loadings, eigenvalues and percentage of variance explained by the first two discriminant function analyses and Principal Components of morphometric and environmental variables.