Andrew C Kitchener

• BSc, PhD
• Principal Curator of Vertebrates at National Museums Scotland

It is important to understand the impact of captivity upon skeletal morphology to ensure best practices in welfare, and to create captive populations that are fit for potential reintroduction. Here, we discuss the relationship between diet and skeletal morphology by reviewing the large body of work that is focused upon laboratory experiments, and,...

The illegal wildlife markets of Southeast Asia are bolstered by organised criminal networks and the region’s rich density of charismatic wildlife. Forensic tools identifying species and their origins are vital to combat wildlife crime. However, many require expensive technology and skilled personnel, limiting their use in rural trade hotspots. This...

Despite the domestic cat's (Felis catus) close association with humans, the timing and circumstances of its domestication and subsequent introduction to Europe are unresolved. Domestication of its wild progenitor, the African wildcat (F. lybica), is widely attributed to the emergence of farming. Wildcats are said to have been attracted to settled c...

Dental calculus metagenomics has emerged as a valuable tool for studying the oral microbiomes of humans and a few select mammals. With increasing interest in wild animal microbiomes, it is important to understand how widely this material can be used across the mammalian tree of life, refine the related protocols and understand the expected outcomes...

The role of zoos has shifted markedly from their origins in the nineteenth century to the present day. Long-lived and charismatic individual animals have been central to zoological collections, as priorities have changed from a primary focus on entertainment to a greater emphasis on education, conservation, research and welfare. Here, we construct...

Aim Indigenous range maps are fundamental documents in biogeography, phylogeny and conservation. We define the indigenous range of a species as ecoregions (or parts of ecoregions) where the species was likely found before humans became a major factor shaping the species' distribution, beginning at a time when the geographical alignment of the conti...

The mechanical properties of dietary items are known to influence skull morphology, either through evolution or by phenotypic plasticity. Here, we investigated the impact of supplementary feeding of peanuts on the morphology of red squirrels (Sciurus vulgaris) from five populations in Britain (North Scotland, Borders, Jersey and two temporally dist...

Remnant populations of endangered species often have complex demographic histories associated with human impact. This can present challenges for conservation as populations modified by human activity may require bespoke management. The Eurasian red squirrel, Sciurus vulgaris (L., 1758), is endangered in the UK. Scotland represents a key stronghold,...

Birds of prey (‘raptors’) often consume anthropogenic foods and can be closely associated with human settlements. In medieval Britain, birds of prey were commensal animals, especially in towns where biological waste was abundant. However, the antiquity of this relationship has not been well explored. In this study, we used stable isotopes of carbon...

Species reintroductions are increasingly seen as important methods of biodiversity restoration. Reintroductions of red kites Milvus milvus and white-tailed eagles Halieaeetus albicilla to Britain, which were extirpated in the late 19th and early 20th centuries, represent major conservation successes. Here, we measured stable isotope ratios of carbo...

We describe multiple partial skeletons and isolated bones of the palaeognathous Lithornithiformes from the early Eocene London Clay of Walton‐on‐the‐Naze (Essex, UK). The well‐preserved specimens are assigned to at least four species of the taxa Lithornis and Pseudocrypturus. Two species of Lithornis are identified as L. nasi and L. cf. grandei . T...

Ecological variation and anthropogenic landscape modification have had key roles in the diversification and extinction of mammals in Madagascar. Lemurs represent a radiation with more than 100 species, constituting roughly one-fifth of the primate order. Almost all species of lemurs are threatened with extinction, but little is known about their ge...

Introduction Elasmobranchs, such as sharks and rays, are among the world’s most endangered vertebrates, with over 70% loss in abundance over the past 50 years due to human impacts. Zooarchaeological baselines of elasmobranch diversity, distribution, and exploitation hold great promise for contributing essential historical contexts in the assessment...

The European polecat (Mustela putorius) has a widespread distribution across many countries of mainland Europe, but is documented to be declining within these ranges. In Britain, direct persecution led to a severe decline of the polecat population during the 19th century. Unlike European mainland populations, it is now recovering across much of its...

Now extinct, the aurochs (Bos primigenius) was a keystone species in prehistoric Eurasian and North African ecosystems, and the progenitor of cattle (Bos taurus), domesticates that have provided people with food and labour for millennia¹. Here we analysed 38 ancient genomes and found 4 distinct population ancestries in the aurochs—European, Southwe...

The lion (Panthera leo) was extirpated from the Cape region of South Africa during the mid-nineteenth century. Whilst historically classified as a distinct subspecies known as the Cape lion (P. l. melanochaita), recent molecular studies challenge the distinctiveness of this population, suggesting that it represents the southernmost population of th...

Pinnipeds have long, sensitive, moveable mystacial vibrissae. In other mammals, intrinsic muscles contribute to protracting the vibrissae. However, the mystacial muscles of pinnipeds have not yet been systematically described. Using traditional histological methods provides us with two‐dimensional muscle images, but having the ability to visualise...

Sand cats, Felis margarita, range from northern Africa and the Arabian Peninsula to Central Asia. Their apparently discontinuous distribution is recognized as comprising four subspecies. Recent genetic research found little differentiation between subspecies except for the North African form. In this study, 90 skins and 88 skulls were analyzed from...

Sirenia, an iconic marine taxon with a tropical and subtropical worldwide distribution, face an uncertain future. All species are designated ‘Vulnerable’ to extinction by the IUCN. Nonetheless, a comprehensive understanding of geographic structuring across the global range is lacking, impeding our ability to highlight particularly vulnerable popula...

Remnant populations of endangered species often have complex demographic histories associated with human impact. This can present challenges for conservation as the genetic status of these populations are often a-typical of natural populations, and may require bespoke management. The Eurasian red squirrel, Sciurus vulgari s (L., 1758), is endangere...

Fossils of the avian clade Strisores (nightjars, swifts and allies) are well represented in some early Eocene localities. These birds were also taxonomically diverse in the British London Clay, but most of the previously described fossils belong to the Apodiformes (swifts and allies), or are represented by very fragmentary specimens. Here we report...

A photographic and computed tomography (CT) scanning study was carried out on 295 molar teeth of 18 adult male Babyrousa babyrussa skulls and 8 skulls of Babyrousa celebensis including seven adult males and one adult female. The occlusal morphology of the permanent maxillary and mandibular molar teeth of B. babyrussa was very similar to that of B....

We describe upupiform, coraciiform, and possible piciform birds from the early Eocene London Clay of Walton-on-the-Naze (Essex, UK). The material includes partial skeletons of a new species of a small upupiform bird, Waltonirrisor tendringensis , gen. et sp. nov., which is the earliest known representative of the Upupiformes. Three very similar spe...

We describe new specimens and species of apodiform birds from the early Eocene London Clay of Walton‐on‐the Naze (Essex, UK). In addition to multiple partial skeletons of Eocypselus vincenti Harrison, 1984, three new species of Eocypselus are described as Eocypselus geminus , sp. nov., Eocypselus paulomajor , sp. nov. and Eocypselus grandissimus ,...

Habitat degradation and loss of genetic diversity are common threats faced by almost all of today’s wild cats. Big cats, such as tigers and lions, are of great concern and have received considerable conservation attention through policies and international actions. However, knowledge of and conservation actions for small wild cats are lagging consi...

Noncoding DNA is central to our understanding of human gene regulation and complex diseases1,2, and measuring the evolutionary sequence constraint can establish the functional relevance of putative regulatory elements in the human genome3–9. Identifying the genomic elements that have become constrained specifically in primates has been hampered by...

Simple Summary This study finds that the skulls and mandibles of lions and tigers in predominantly European zoos differ in shape, but not size, from lions and tigers in the wild. The nature of the shape change found indicates that the mechanical influences of diet have influenced development. The majority of captive big cats used in this study have...

Understanding the drivers of speciation is fundamental in evolutionary biology, and recent studies highlight hybridization as an important evolutionary force. Using whole-genome sequencing data from 22 species of guenons (tribe Cercopithecini), one of the world's largest primate radiations, we show that rampant gene flow characterizes their evoluti...

Domestic cats were derived from the Near Eastern wildcat (Felis lybica), after which they dispersed with peolple into Europe. As they did so, it is possible that they interbred with the indigenous population of European wildcats (Felis silvestris). Gene flow between incoming domestic animals and closely related indigenous wild species has been prev...

Clouded leopards ( Neofelis spp.), a morphologically and ecologically distinct lineage of big cats, are severely threatened by habitat loss and fragmentation, targeted hunting, and other human activities. The long-held poor understanding of their genetics and evolution has undermined the effectiveness of conservation actions. Here, we report a comp...

We report charadriiform and charadriiform-like birds from the early Eocene London Clay of Walton-on-the-Naze (Essex, UK). A partial skeleton of a small modern-type charadriiform is described as a new species, Charadriisimilis essexensis n. gen. n. sp., and most closely resembles taxa of the Charadrii (plovers, stilts, oystercatchers, and other “wad...

The blue antelope or bluebuck ( Hippotragus leucophaeus ) is an extinct species of antelope that lived in South Africa until ca. 1799–1800. Disappearing only 34 years after it was described, it was the first large African mammal species to have become extinct in recent times. Therefore, current scientific knowledge of the blue antelope is limited t...

One of the largest ecological transitions in carnivoran evolution was the shift from terrestrial to aquatic lifestyles, which has driven morphological diversity in skulls and other skeletal structures. In this paper, we investigate the association between those lifestyles and whisker morphology. However, comparing whisker morphology over a range of...

Understanding the drivers of speciation is fundamental in evolutionary biology, and recent studies highlight hybridization as a potential facilitator of adaptive radiations. Using whole-genome sequencing data from 22 species of guenons (tribe Cercopithecini), one of the world's largest primate radiations, we show that rampant gene flow characterize...

Dolphins are mobile apex marine predators. Over the past three decades, warm-water adapted dolphin species (short-beaked common and striped) have expanded their ranges northward and become increasingly abundant in British waters. Meanwhile, cold-water adapted dolphins (white-beaked and Atlantic white-sided) abundance trends are decreasing, with evi...

Personalized genome sequencing has revealed millions of genetic differences between individuals, but our understanding of their clinical relevance remains largely incomplete. To systematically decipher the effects of human genetic variants, we obtained whole-genome sequencing data for 809 individuals from 233 primate species and identified 4.3 mill...

The rich diversity of morphology and behavior displayed across primate species provides an informative context in which to study the impact of genomic diversity on fundamental biological processes. Analysis of that diversity provides insight into long-standing questions in evolutionary and conservation biology and is urgent given severe threats the...

We describe multiple partial skeletons of a new trogon species from the early Eocene London Clay of Walton-on-the-Naze (Essex, UK), which are among the oldest fossils of the Trogoniformes. Eotrogon stenorhynchus , gen. et sp. nov. has a much narrower and more gracile beak than extant trogons, which denotes different ecological attributes of the fos...

Fin whales Balaenoptera physalus were hunted unsustainably across the globe in the 19th and 20th centuries, leading to vast reductions in population size. Whaling catch records indicate the importance of the Southern Ocean for this species; approximately 730,000 fin whales were harvested during the 20th century in the Southern Hemisphere (SH) alone...

Personalized genome sequencing has revealed millions of genetic differences between individuals, but our understanding of their clinical relevance remains largely incomplete. To systematically decipher the effects of human genetic variants, we obtained whole genome sequencing data for 809 individuals from 233 primate species, and identified 4.3 mil...

The rich diversity of morphology and behavior displayed across primate species provides an informative context in which to study the impact of genomic diversity on fundamental biological processes. Analysis of that diversity provides insight into long-standing questions in evolutionary and conservation biology, and is urgent given severe threats th...

Lemurs are a well-known example of adaptive radiation. Since colonizing Madagascar, more than 100 extant lemur species have evolved to fill the variety of ecological niches on the island. However, recent work suggests that lemurs do not exhibit one of the hallmarks of adaptive radiations: explosive speciation rates that decline over time. We test t...

Phylogeographies of African mammals reveal patterns that correlate with Pleistocene environmental fluctuations and geographical barriers, which may affect species differently according to their habitat preferences and dispersal capabilities. The marsh mongoose Atilax paludinosus, a widely distributed African carnivoran, is a good model to compare w...

A photographic and computed tomography (CT) scanning study was carried out on the premolar teeth of 18 adult male Babyrousa babyrussa skulls, 10 skulls of Babyrousa celebensis, including 6 adult males, 1 adult female, 1 subadult male, 1 subadult female, and 1 juvenile male. The occlusal morphology of the permanent maxillary premolar teeth of B. bab...

Many poorly-known small mammals have remained undetected for decades, including Melomys fulgens , a distinctive orange murid from Seram, Indonesia, that has been unrecorded since 1920. We report previously undocumented specimens of M. fulgens collected in 1993 and 1994, and local ecological knowledge from 2017 including descriptions and recent sigh...

The Scottish Wildcat Action (SWA) project ran from 2015-2020, funded by the Scottish Government, National Lottery Heritage Fund and others. The project implemented the Scottish Wildcat Conservation Action Plan (SWCAP). SWA operated with a team of project staff managed by NatureScot, and associated work was carried out by various partner organisatio...

Population-genomic studies can shed new light on the effect of past demographic processes on contemporary population structure. We reassessed phylogeographical patterns of a classic model species of postglacial recolonisation, the brown bear (Ursus arctos), using a range-wide resequencing dataset of 128 nuclear genomes. In sharp contrast to the err...

Beaked whales, Family Ziphiidae, occur in deep offshore and oceanic seas, where they are very difficult to study, so that much of our knowledge about them is derived from stranded animals. Most beaked whales (e.g., genera Mesoplodon and Ziphius) have only one pair of mandibular teeth. A reduced dentition is widely regarded as an adaptation to sucti...

Ruffed lemurs ( Varecia variegata and Varecia rubra ) are categorized as Critically Endangered on the IUCN Red List, and genetic studies are needed for assessing the conservation value of captive populations. Using 280 mitochondrial DNA (mtDNA) D-loop sequences, we studied the genetic diversity and structure of captive ruffed lemurs in Madagascar,...

We describe a new species of Rhynchaeites from the early Eocene London Clay of Walton-on-the-Naze (Essex, UK), which is represented by a partial skeleton comprising a skull and most major postcranial bones. Multiple further partial skeletons are assigned to Rhynchaeites sp. and include skeletal elements that are rarely preserved in Paleogene birds....

Pelage coloration and hair structure are reported for 32 grey wolf, Canis lupus, specimens collected between 2015 and 2020 from different regions of Turkey. The specimens were divided into three age groups; pups, juveniles and adults. Three pups have smoky grey dorsal pelage coloration. The dorsal pelage of juvenile and adult specimens, though slig...

As knowledge of husbandry has improved with the keeping of wild animals in zoos over the last 200 years, so longevity has also improved, bringing with it challenges owing to the development of pathologies associated with ageing. In this chapter, the principal skeletal and dental pathologies of aged zoo mammals are described, and the results of prev...

Morphological traits, such as white patches, floppy ears and curly tails, are ubiquitous in domestic animals and are referred to as the 'domestication syndrome'. A commonly discussed hypothesis that has the potential to provide a unifying explanation for these traits is the 'neural crest/domestication syndrome hypothesis'. Although this hypothesis...

Tiger subspecific taxonomy is controversial because of morphological and genetic variation found between now fragmented populations, yet the extent to which phenotypic plasticity or genetic variation affects phenotypes of putative tiger subspecies has not been explicitly addressed. In order to assess the role of phenotypic plasticity in determining...

We report the first records of the leptosomiform taxon Plesiocathartes from the early Eocene London Clay of Walton-on-the-Naze (Essex, UK). Two species could be distinguished, one of which is described as Plesiocathartes insolitipes , sp. nov. (the other is classified as Plesiocathartes sp.). We furthermore describe two small leptosomiform-like bir...

The Daniels collection of fossil birds from the early Eocene London Clay of Walton-on-the-Naze (Essex, UK) contains multiple specimens of the Psittacopedidae and Zygodactylidae, which are here for the first time studied in detail. The Psittacopedidae include Parapsittacopes bergdahli, Psittacomimus eos, gen. et sp. nov., ?Psittacopes occidentalis,...

The deep sea is the largest ecosystem on Earth, yet little is known about the processes driving patterns of genetic diversity in its inhabitants. Here, we investigated the macro- and microevolutionary processes shaping genomic population structure and diversity in two poorly understood, globally distributed, deep-sea predators: Cuvier’s beaked whal...

We describe a partial skeleton of a fossil owl (Strigiformes) from the early Eocene London Clay of Walton‐on‐the‐Naze (Essex, UK). The holotype of Ypresiglaux michaeldanielsi, gen. et sp. nov. is one of the most complete specimens of a Palaeogene owl and elucidates the poorly known ecomorphology of stem group Strigiformes. Whereas most of the postc...

We describe a stem group representative of Gaviiformes (loons or divers) from the early Eocene London Clay of Walton-on-the-Naze (Essex, UK). The holotype of Nasidytes ypresianus gen. et sp. nov. is a partial skeleton including the mandible and all major limb bones. The new species is the oldest unambiguously identified loon and the most substantia...

The Eocene taxon Masillaraptoridae includes long-legged, raptorial birds, the phylogenetic affinities of which are poorly resolved. Here, fossils from the London Clay of Walton-on-the-Naze (Essex, U.K.) are described, which corroborate the hypothesis that masillaraptorids are stem group representatives of the Falconiformes (falcons). Two partial sk...

Assessing the genetic diversity of captive populations of endangered species is key to the successful management of conservation-breeding programs. In this study, we sequenced a 393-bp fragment of the mitochondrial DNA (mtDNA) control region of 23 captive individuals of the Endangered François’ langur ( Trachypithecus francoisi ) to assess the mtDN...

Hybridisation between domestic and wild taxa can pose severe threats to wildlife conservation, and human induced hybridisation, often linked to species' introductions and habitat degradation, may promote reproductive opportunities between species for which natural interbreeding would be highly unlikely. Using a biome specific approach, we examine t...

The African golden cat, Caracal aurata, ranges from west through central to east Africa and is categorized as Vulnerable on the IUCN Red List of Threatened Species. Coenraad J. Temminck (1778–1858) described Felis aurata (African golden cat) and other new felid species in the fourth of seven monographs collected in the first volume of his Monograph...

Analyzing the δ 2 H values in individual amino acids of proteins extracted from vertebrates, we unexpectedly found in some samples, notably bone collagen from seals, more than twice as much deuterium in proline and hydroxyproline residues than in seawater. This corresponds to at least 4 times higher δ 2 H than in any previously reported biogenic sa...

Species monitoring and conservation is increasingly challenging under current climate change scenarios. For the North Atlantic right whale (Eubalaena glacialis) this challenge is heightened by the added effects of complicated and uncertain past species demography. Right whales once had a much wider distribution across the North Atlantic Ocean, alth...

Reduced brain size, compared with wild individuals, is argued to be a key characteristic of domesticated mammal species, and often cited as a key component of a putative ‘domestication syndrome’. However, brain size comparisons are often based on old, inaccessible literature and in some cases drew comparisons between domestic animals and wild speci...

Taxonomy and systematics are fundamental to the success of conservation actions. A robust and accurate classification of living organisms is vital for understanding biodiversity, using limited resources wisely, prioritising conservation action, and for legal protection and regulation of trade. However, all too often current taxonomies are not based...

A male pilot whale, Globicephala sp., was reported as a live stranding on 1st March 2012 at Hazelbeach, near Neyland, Pembrokeshire. It was euthanased and its skull was recovered during an onsite necropsy. Examination of the skull and contemporary photographs of the stranded animal confirm that this is the first record of short-finned pilot whale,...

Successful conservation depends on accurate taxonomy. Currently, the taxonomy of canids in Africa, Eurasia and Australasia is unstable as recent molecular and morphological studies have questioned earlier phenetic classifications. We review available information on several taxa of Old World and Australasian Canis with phylogenetic uncertainties (na...

Analysing the δ2H in individual amino acids of proteins extracted from vertebrates, we unexpectedly found in some samples, notably bone collagen from seals, more than twice as much deuterium in proline and hydroxyproline residues than in seawater. This corresponds to at least four times higher δ2H than in any previously reported biogenic sample. We...

The order Carnivora, which currently includes 296 species classified into 16 families, is distributed across all continents. The phylogeny and the timing of diversification of members of the order are still a matter of debate. Here, complete mitochondrial genomes were analysed to reconstruct the phylogenetic relationships and to estimate divergence...

While hybridisation has long been recognised as an important natural phenomenon in evolution, the conservation of taxa subject to introgressive hybridisation from domesticated forms is a subject of intense debate. Hybridisation of Scottish wildcats and domestic cats is a good example in this regard. We develop a modelling framework to determine the...

Elusive wildlife are challenging to study, manage, or conserve, as the difficulty of obtaining specimens or conducting direct observations leads to major data deficiencies. Specimens of opportunity, such as salvaged carcasses or museum specimens, are a valuable source of fundamental biological and ecological information on data deficient, elusive s...

Elusive wildlife are challenging to study, manage, or conserve, as the difficulty of obtaining specimens or conducting direct observations leads to major data deficiencies. Specimens of opportunity, such as salvaged carcasses or museum specimens, are a valuable source of fundamental biological and ecological information on data deficient, elusive s...

The novel coronavirus SARS-CoV-2, which in humans leads to the disease COVID-19, has caused global disruption and more than 2 million fatalities since it first emerged in late 2019. As we write, infection rates are at their highest point globally and are rising extremely rapidly in some areas due to more infectious variants. The primary target of S...