An Suk Lim

• PhD
• Assistant Professor at Gyeongsang National University

This review explores the biological rhythms of eukaryotic microalgae, focusing on chlorophytes, diatoms, and dinoflagellates and their applications in biotechnology and ecology. Eukaryotic microalgae, which are crucial primary producers in aquatic ecosystems, exhibit complex biological rhythms that synchronize physiological processes such as photos...

Brassica napus (rapeseed) is a globally important crop, primarily valued for its oil production. However, feral B. napus in non-agricultural areas remains under-researched. This study aims to examine the roles of microbial generalists and network keystone species in shaping microbial diversity and network stability of feral B. napus. We analyzed pr...

Microcystis aeruginosa is a major cyanobacterium that can secrete toxins, such as microcystin, and causes harmful algal blooms. Despite extensive research on the effects of microcystins on other organisms, research on how introduced M. aeruginosa into estuaries affects marine phytoplankton is scarce. In this study, the effect of M. aeruginosa on th...

Total annual net primary productions in marine and terrestrial ecosystems are similar. However, a large portion of the newly produced marine phytoplankton biomass is converted to carbon dioxide because of predation. Which food web structure retains high carbon biomass in the plankton community in the global ocean? In 6954 individual samples or loca...

Understanding the variability of microbial niches and their interaction with abiotic and biotic factors in the Arctic can provide valuable insights into microbial adaptations to extreme environments. This study investigates the structure and diversity of soil bacterial communities obtained from sites with varying vegetation coverage and soil biogeo...

Exploring mixotrophy of dinoflagellate species is critical to understanding red-tide dynamics and dinoflagellate evolution. Some species in the dinoflagellate genus Karenia have caused harmful algal blooms. Among 10 Karenia species, the mixotrophic ability of only two species, Karenia mikimotoi and Karenia brevis, has been investigated. These speci...

The mortality rate of red-tide dinoflagellates owing to predation is a major parameter that affects their population dynamics. The dinoflagellates Ansanella granifera and Ansanella sp. occasionally cause red tides. To understand the interactions between common heterotrophic protists and A. granifera, we explored the feeding occurrence of nine heter...

Five strains of Drouetiella (ACKU666, 667, 668, 669 and 670) were isolated from gravels in water, stone monument and coastal mudflat in Korea, and were studied using morphological and molecular traits. All five strains had thin and simple trichomes and exhibited false branching. From these strains, four strains (ACKU666, 667, 668 and 669) exhibited...

Six strains of subaerial cyanobacteria were isolated from a Gomso saltern in the Republic of Korea, all of which were studied using morphological and molecular traits. Trichotorquatus salinus sp. nov. was studied using a light microscope (LM), transmission electron microscope (TEM), 16S rRNA, 16S–23S ITS region, and ecological data. T. salinus is a...

To explore the effects of eutrophic deep waters offshore on red-tide outbreaks, waters were collected from 0, 20, and 40 m depths at an offshore station in the South Sea of Korea, and the growth rate of each major red-tide dinoflagellate Prorocentrum donghaiense, Tripos furca, Alexandrium fraterculus, and Margalefidinium polykrikoides in the waters...

The primary production (PP) by phytoplankton in marine ecosystems is essential for carbon cycling and fueling food webs. Hence, estimating the PP in the territorial sea of each country is a necessary step to achieving carbon neutrality. To estimate the PP in the territorial sea of the Republic of Korea from 2005 to 2021, we analyzed various physioc...

Noctiluca scintillans is a heterotrophic dinoflagellate that causes red-colored oceans during the day (red tides) and glowing oceans at night (bioluminescence). This species feeds on diverse prey, including phytoplankton, heterotrophic protists, and eggs of metazoans. Thus, many scientists have conducted studies on the ecophysiology of this species...

The key nutrient sources for red-tide species are freshwater and deep cold waters. However, a lack of data on their growth rates at different depths limits our understanding of the effects of deep cold waters on red-tide formation. Offshore water was collected from 0, 20, and 40 m in the South Sea of Korea and the growth rates of major red-tide spe...

A novel bacterium, strain SJAQ100 T , was isolated from a freshwater aquarium and was characterized taxonomically and phylogenetically. Strain SJAQ100 T was a Gram-stain-negative, aerobic, rod-shaped and non-motile bacterium. The strain grew optimally with 0 % NaCl and at 25–37 °C on Reasoner's 2A agar. Phylogenetic analysis based on the 16S rRNA g...

Phytoplankton blooms can cause imbalances in marine ecosystems leading to great economic losses in diverse industries. Better understanding and prediction of blooms one week in advance would help to prevent massive losses, especially in areas where aquaculture cages are concentrated. This study has aimed to develop a method to predict the magnitude...

The occurrence of benthic dinoflagellates, many of which are known to be toxic, is a critical concern for scientists, government officers, and people in the aquaculture, dining, and tourism industries. The interest in these dinoflagellates in countries with temperate climate is increasing because tropical or subtropical species introduced into temp...

The mixotrophic dinoflagellate Tripos furca causes red tides in the waters of many countries. To understand its popu-lation dynamics, mortality due to predation as well as growth rate should be assessed. Prior to the present study, the heterotrophic dinoflagellates Noctiluca scintillans, Polykrikos kofoidii, Protoperidinium steinii, and mixotrophic...

Microalgae fuel food webs and biogeochemical cycles of key elements in the ocean. What determines microalgal dominance in the ocean is a long-standing question. Red tide distribution data (spanning 1990 to 2019) show that mixotrophic dinoflagellates, capable of photosynthesis and predation together, were responsible for ~40% of the species forming...

Omega-3 fatty acids, including eicosapentaenoic acid (EPA) and docosahexaenoic acid (DHA), are polyunsaturated fatty acids beneficial to human health. A limited number of microalgae have been used for commercial omega-3 production, which necessitates the identification of new microalgae with high omega-3 contents. We explored the fatty acid composi...

Water temperature is known to affect the growth and feeding of marine dinoflagellates. Each dinoflagellate species grows well at a certain optimal temperature but dies at very cold and hot temperatures. Thus, changes in water temperatures driven by global warming and extremely high or low temperatures can affect the distribution of dinoflagellates....

Gymnodinium smaydae is a fast–growing mixotrophic dinoflagellate. This study investigated whether light intensity (0–346 µmol photons m-2 s-1) and temperature (5–35 oC) affect the autotrophic or mixotrophic growth rate or ingestion rate of Gymnodinium smaydae GSSH1005. At all light intensities tested, G. smaydae GSSH1005 showed negative autotrophic...

Mixotrophy in marine organisms is an important aspect of ecology and evolution. The discovery of mixotrophic abilities in phototrophic dinoflagellates alters our understanding of the dynamics of red tides. In the phototrophic dino-flagellate genus Alexandrium, some species are mixotrophic, but others are exclusively autotrophic. There are differenc...

Takayama helix is a mixotrophic dinoflagellate that can feed on diverse algal prey. We explored the effects of light intensity and water temperature, two important physical factors, on its autotrophic and mixotrophic growth rates when fed on Alexandrium minutum CCMP1888. Both the autotrophic and mixotrophic growth rates and ingestion rates of T. he...

The newly described phototrophic dinoflagellate Alexandrium pohangense, APPH1409, fed only on the dinoflagellate Margalefidinium polykrikoides among 16 potential algal prey species tested. To explore the ecophysiology of A. pohangense, its growth and ingestion rates with and without added M. polykrikoides prey were determined as a function of light...

Phytoplankton production in coastal waters influences seafood production and human health - and can lead to harmful algal blooms. Water temperature and eutrophication are critical factors affecting phytoplankton production, although the combined effects of warming and nutrient changes on phytoplankton production in coastal waters are not well under...

The planktonic phototrophic dinoflagellate Gonyaulax whaseongensis sp. nov., isolated from coastal waters of western Korea, was described from living and fixed cells under light and scanning electron microscopy, and its rDNA was sequenced. Gonyaulax whaseongensis had a plate formula of 2pr, 4′, 6′′, 6c, 6′′′, 1p, and 1′′′′ with S‐type ventral organ...

Ostreopsis is an epiphytic and potentially toxic dinoflagellate. Here, we have provided the first report about the occurrence of Ostreopsis cf. ovata in Korean waters. In general, the morphology of the Korean strain of O. cf. ovata isolated from the waters off Jeju Island, Korea, was similar to the original description of O. ovata isolated from Jap...

Microalgae have been utilized in diverse industries including aquaculture. Among the microalgae, dinoflagellates are known to have various bioactive compounds, and thus the interest in their application to industry has increased. In order to test their potential as food materials for aquaculture animals, the crude protein contents and compositions...

Heterotrophic nanoflagellates are ubiquitous in natural waters, and most heterotrophic nanoflagellates are known to grow on bacteria. Recently, the heterotrophic nanoflagellate Katablepharis japonica has been reported to be an effective predator of diverse toxic or harmful algal prey. To date, 7 Katablepharis species have been identified, and there...

Occurrence of Cochlodinium polykrikoides red tides have resulted in considerable economic losses in the aquaculture industry in many countries, and thus predicting the process of C. polykrikoides red tides is a critical step toward minimizing those losses. Models predicting red tide dynamics define mortality due to predation as one of the most impo...

The ichthyotoxic Cochlodinium polykrikoides red tides have caused great economic losses in the aquaculture industry in the waters of Korea and other countries. Predicting outbreak of C. polykrikoides red tides 1-2 weeks in advance is a critical step in minimizing losses. In the South Sea of Korea, large C. polykrikoides red tide patches have often...

The ability of a red tide species to take up nutrients is a critical factor affecting its red tide dynamics and species competition. Nutrient uptake by red tide species has been conventionally measured by incubating nutrient-depleted cells for a short period at 1 or 2 light intensities. This method may be applicable to certain conditions under whic...

Scuticociliatosis, which is caused by parasitic protistan pathogens known as scuticociliates, is one of the most serious diseases in marine aquaculture worldwide. Thus, elimination of these ciliates is a primary concern for scientists and managers in the aquaculture industry. To date, formalin and other toxic chemicals have been used as anti-scutic...

Red tides by the ichthyotoxic dinoflagellate Cochlodinium polykrikoides have caused large scaled mortality of fish and great loss in aquaculture industry in many countries. Detecting and quantifying the abundance of this species are the most critical step in minimizing the loss. The conventional quantitative real-time PCR (qPCR) method has been use...

Red tides dominated by Cochlodinium polykrikoides often lead to great economic losses and some methods of controlling these red tides have been developed. However, due to possible adverse effects and the short persistence of their control actions, safer and more effective sustainable methods should be developed. The non-toxic dinoflagellate Alexand...

Blooms caused by some species belonging to the dinoflagellate genus Alexandrium are known to cause large-scale mortality of fish. Thus, the dynamics of these species is important and of concern to scientists, officials, and people in the aquaculture industry. To understand the dynamics of such species, their growth and mortality due to predation ne...

To explore the feeding ecology of the newly described heterotrophic dinoflagellate Aduncodinium glandula in the family Pfiesteriaceae, its feeding behavior and prey species were investigated. Additionally, the growth and ingestion rates of A. glandula on the mixotrophic dinoflagellates Heterocapsa triquetra and Akashiwo sanguinea, its optimal and s...

Newly described Alexandrium pohangense is a phototrophic dinoflagellate, and its trophic mode should be explored to understand its roles in marine ecosystems. To investigate feeding of A. pohangense and its ecological roles, its trophic mode, prey type, feeding mechanism, functional and numerical responses, and grazing impact were analyzed. Among d...

Ostreopsis cf. ovata is a toxic dinoflagellate with a wide distribution, from tropical to temperate waters. This species is primarily an epiphytic benthic dinoflagellate, but it also lives in the water column and sometimes forms harmful red tides. The taxonomy, physiology, and distribution of O. cf. ovata have been extensively investigated, and tox...

Red tides – discolorations of the sea surface due to dense plankton blooms – occur regularly in coastal and offshore waters along much of the world's coastline. Red tides often cause large-scale mortalities of fish and shellfish and significant losses to the aquaculture and tourist industries of many countries. Therefore, understanding and predicti...

Dinoflagellates in the genus Symbiodinium are known as zooxanthellae and exist as either symbiotic or free-living forms. Among this genus, two species, Symbiodinium minutum and Symbiodinium psygmophilum, were recently established based on genetic characters. However, some critical morphological characters of these species, such as plate formulae an...

Dinoflagellates in the genus Symbiodinium are ubiquitous in shallow marine habitats where they commonly exist in symbiosis with cnidarians. Attempts to culture them often retrieve isolates that may not be symbiotic, but instead exist as free-living species. In particular, cultures of Symbiodinium clade E obtained from temperate environments were re...

The marine phototrophic dinoflagellate Gymnodinium smaydae n. sp. is described from cells prepared for light, scanning, and transmission electron microscopy. Also, sequences of the small (SSU) and large subunits (LSU) and the internal transcribed spacer region (ITS1–5.8S–ITS2) of ribosomal DNA were analyzed. This newly isolated dinoflagellate posse...

To investigate heterotrophic protists grazing on Symbiodinium sp., we tested whether the common heterotrophic dinoflagellates Gyrodinium dominans, Gyrodinium moestrupii, Gyrodinium spirale, Oblea rotundata, Oxyrrhis marina, and Polykrikos kofoidii and the ciliates Balanion sp. and Parastrombidinopsis sp. preyed on the free-living dinoflagellate Sym...

Gambierdiscus spp. are epiphytic, benthic dinoflagellates. Some species have been shown to be toxic and cause ciguatera fish poisoning. We report, for the first time, the occurrence of Gambierdiscus caribaeus isolated from the waters off Jeju Island in Korea. Its morphology was similar to that of the original Belize strains of G. caribaeus. Gambier...