
Amal Senevirathne- PhD
- Research Professor at Jeonbuk National University
Amal Senevirathne
- PhD
- Research Professor at Jeonbuk National University
Salmonella pathogenicity, Salmonella mediated immunotherapy, Antimicrobial peptides
About
76
Publications
30,516
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Introduction
I am a molecular microbiologist with interdisciplinary research experience in genetics, microbiology, and immunology. My current research investigations involve the development of attenuated Salmonella strains for vaccine delivery, cancer immunotherapy, genomics and bioinformatics characterization of bacteriophages. I am interested in understanding host-pathogen interaction of pathological human bacteria species and investigate novel cancer therapies targeting oxidative glycolysis.
Current institution
Additional affiliations
September 2021 - present
October 2012 - present
Position
- Graduate research scientist (PhD candidate)
Description
- I am working under the supervision of Prof. Kim Kwang Pyo. My main research area is on development, characterization and application of monoclonal antibodies for the rapid detection of food borne pathogens, Staphylococcus aureus, Escherichia coli O157:H7.
February 2002 - December 2011
Education
September 2012 - September 2016
Publications
Publications (76)
Fowl typhoid (FT), caused by Salmonella Gallinarum (SG), inflicts a significant economic burden on the poultry
industry. Our study focused on a non-reversible gene deletion to develop a safe and effective SG vaccine strain
through lipopolysaccharide (LPS) structural modification. The virulence-attenuated SG JOL914 strain, generated
by deleting the...
Cancer immunotherapy has revolutionized cancer treatment
due to its precise, target-specific approach compared with conventional therapies. However, treating solid tumors remains
challenging as these tumors are inherently immunosuppressive, and their tumor microenvironment (TME) often limits
therapeutic efficacy. Interestingly, certain bacterial sp...
Fowl typhoid (FT) poses a significant threat to the poultry industry and can cause substantial economic losses, especially in developing regions. Caused by Salmonella Gallinarum (SG), vaccination can prevent FT. However, existing vaccines, like the SG9R strain, have limitations, including residual virulence and potential reversion of pathogenicity....
Advancements in vaccine technology are increasingly focused on leveraging the unique properties of both pathogenic and commensal bacteria. This revolutionary approach harnesses the diverse immune modulatory mechanisms and bacterial biology inherent in different bacterial species enhancing vaccine efficacy and safety. Pathogenic bacteria, known for...
In the current study, two Salmonella Typhimurium strains, JOL 912 and JOL 1800, were engineered from the wild-type JOL 401 strain through in-frame deletions of the lon and cpxR genes, with JOL 1800 also lacking rfaL. These deletions significantly attenuated the strains, impairing their intracellular survival and creating unique immunological profil...
Fowl typhoid (FT) poses a significant threat to the poultry industry, especially in developing regions, causing substantial economic losses. Caused by Salmonella Gallinarium, FT can be prevented by vaccination, but existing vaccines like the SG9R strain have limitations, including residual virulence and potential reversion of pathogenicity. This st...
In our prior investigations, we elucidated the role of the tryptophan-to-tyrosine substitution at the 61st position in the nonstructural protein NSsW61Y in diminishing the interaction between nonstructural proteins (NSs) and nucleoprotein (NP), impeding viral replication. In this study, we focused on the involvement of NSs in replication via the mo...
Background
Lawsonia intracellularis is the causative agent of proliferative enteropathy and is associated with several outbreaks, causing substantial economic loss to the porcine industry.
Objectives
In this study, we focused on demonstrating the protective effect in the mouse model through the immunological bases of two vaccine strains against po...
In this study, we incorporated deletion of the O-antigen ligase gene to an attenuated Salmonella Enteritidis (SE) strain, JOL919 (SE PS; Δlon ΔcpxR), using the Lambda-Red recombination method and evaluated the safety and immunological aspects of the novel genotype, JOL2381 (SE VS: Δlon, ΔcpxR, ΔrfaL). Assessment of fecal shedding and organ persiste...
This study investigates the anticancer properties of the α7-nAChR antagonist SLURP1 with a specific focus on its effect as an inflammation modulator on human colorectal cancer cell lines Caco2, Colo320DM, and H508 cells. The investigation includes the evaluation of cell cycle arrest, cell migration arrest, endogenous expression of SLURP1 and relate...
Abstract
The H9N2 avian influenza virus significantly affects the health of poultry and humans. We identified a prokaryotic and eukaryotic dual-expression vector system, pJHL270, that can provide simultaneous MHC class I and II stimulation of the host immune system, and we designed vaccine antigens by selecting the consensus HA1 sequence and M2e an...
Available online Keywords COBRA Influenza A Salmonella Vaccine Broad spectral protection Abstract A universal vaccine is in high demand to address the uncertainties of antigenic drift and the reduced effectiveness of current influenza vaccines. In this study, a strategy called computationally optimized broadly reactive antigen (COBRA) was used to g...
This study investigated the antiviral activity of aqueous leaf extract of Costus speciosus (TB100) against influenza A. Pretreatment of TB100 in RAW264.7 cells enhanced antiviral activity in an assay using the green fluorescence-expressing influenza A/Puerto Rico/8/1934 (H1N1) virus. The fifty percent effective concentration (EC50) and fifty percen...
This study presents the engineering of a less endotoxic Salmonella Typhimurium strain by manipulating the lipid-A structure of the lipopolysaccharide (LPS) component. Salmonella lipid A was dephosphorylated by using lpxE from Francisella tularensis. The 1-phosphate group from lipid-A was removed selectively, resulting in a close analog of monophosp...
Multidrug-resistant members of the Klebsiella pneumoniae complex have become a threat to human lives and animals, including aquatic animals, owing to the limited choice of antimicrobial treatments. Bacteriophages are effective natural tools available to fight against multidrug-resistant bacteria. The bacteriophage KPP-1 was found to be strictly lyt...
Bacteria-mediated cancer therapy has become a topic of interest under the broad umbrella of oncotherapy. Among many bacterial species, Salmonella remains at the forefront due to its ability to localize and proliferate inside tumor microenvironments and often suppress tumor growth. Salmonella Typhimurium is one of the most promising mediators, with...
This study aimed to characterise and evaluate the probiotic properties of a newly isolated marine bacterium, strain S6031. The isolated strain was identified as Pseudoalteromonas ruthenica. In vivo experiments were conducted with P. ruthenica-immersed larvae and P. ruthenica-enriched Artemia fed to adult zebrafish. Disease tolerance of larval zebra...
The present study describes creating an attenuated Salmonella Gallinarum (SG) strain with reduced endotoxicity to prevent fowl typhoid. The strain was attenuated by deleting the lon, cpxR, and rfaL virulence-related genes. Endotoxicity was reduced by deleting the pagL open reading frame and replacing it with the lpxE gene derived from Francisella t...
The objective of the present study was to create a highly attenuated, safe Salmonella Gallinarium (SG) vaccine strain for chicken vaccination against fowl typhoid (FT) diseases. The SG vaccine strain (SGVS) consists of three virulence-related gene deletions, namely, lon, cpxR, and rfaL. The parent strain (SGPS) with Δlon ΔcpxR genotype was utilized...
This study investigates the interplay between Lon protease and catalase-peroxidase (KatG) in relation to virulence modulation and the response to oxidative stress in Salmonella Typhimurium (ST). Proteomic comparison of ST wild-type and lon deletion mutant led to the recognition of a highly expressed KatG protein product among five other protein can...
Aeromonas phage AHP-1 was originally isolated from crucian carp (Carassius carassius) tissue. It was able to infect Aeromonas hydrophila and A. salmonicida. Genome sequence analysis revealed a 218,317-bp-long linear genome with an overall G + C content of 47.9%, 315 open reading frames (ORFs), and 25 tRNA sequences. Its genome was found to contain...
This study describes the construction and immunological characterization of a novel Salmonella gallinarium ghost vaccine to protect against S. gallinarium (SG) and S. Enteritidis (SE) serotypes. The SG ghost was designed to express N-terminus FliC (D0-D1 domain) and FimA retrieved from the SE genome, and the receptor-binding domain (RBD) of CD40L f...
A marine bacterial strain was isolated from seawater and characterized for it beneficial probiotic effects using zebrafish as a model system. The strain was identified by morphological, physiological, biochemical, and phylogenetic analyses. The strain was most closely related to Pseudoalteromonas xiamenensis Y2, with 99.66% similarity; thus, we nam...
Efficient in vivo delivery of a CRISPR/Cas9 plasmid is of paramount importance for effective therapy. Here, we investigated the usability of Salmonella as a plasmid carrier for in vivo therapy against virus-induced cancer using Marek’s disease virus (MDV) as a model for study in chickens. A green fluorescent protein-expressing CRISPR/Cas9 plasmid e...
Attenuated Salmonella-mediated vaccine constructs were designed by employing selected discontinuous immunodominant epitopes of LatA, FliC, and PAL antigens of Lawsonia intracellularis to create vaccines against porcine proliferative enteropathy (PPE). Whole protein sequences were subjected to in silico prediction of dominant epitopes, the stability...
This study describes an efficient eukaryotic expression system (pJHL204) built into the Salmonella delivery system to enhance the essential efficacy and effectiveness of conventional DNA therapy. The expression system utilizes RNA-dependent RNA polymerase activity (RdRp) of Semiliki Forest Virus attributing to dramatic antigen expression by cytopla...
The present investigation describes a formulation of a live attenuated Salmonella Gallinarium (SG) vaccine candidate against H9N2 influenza and SG infections in chickens. The formulation consists of an equal ratio of three strains, JOL2158, JOL2113, and JOL2074, which deliver hemagglutinin; HA1, HA2, and matrix protein 2 (M2e):: CD154 fusion (M2eCD...
The present study describes the generation of Salmonella Enteritidis (SE) ghosts with a surface decorated Salmonella Typhimurium (ST) flagellin (FliC) antigen for immune enhancement and strain-specific protection. The ghosts were generated by biological means using pJHL184::fliC temperature inducible plasmid where the lysis occurs by phage PhiX174...
The present study investigates the potential of SARS-CoV-2 inactivation by a copper sulfide (CuS) incorporated three-layer mask design. The mask consisted of the outer, middle, and inner layers to give comfort, strength, shape, and safety. The outer layer contained a total of 4.4 % CuS (w/w) (2.2% CuS coated & 2.2 % CuS impregnated) nylon fibers an...
The present study investigates the C-terminus portion of the Brucella MviN protein for its protective immune responses. The C-terminus, Brucella mivN was amplified from the Brucella abortus genome and cloned into asd complemented constitutive expression vector pJHL65. The resultant recombinant plasmid was transformed into asd auxotrophic Salmonella...
We compared the effects of two antacid formulations based on sodium bicarbonate and magnesium hydroxide on a Salmonella-delivered oral Brucella live attenuated vaccine. We conducted a series of in vitro and in vivo experiments to investigate the pH buffering capacity, buffering longevity, and the effects of these formulations on the survival of Sal...
The present study employs the Brucella abortus L7/L12 antigen in a Salmonella secretion platform and investigates its
ability to induce protective immune responses against wild type challenge in BALB/c mice. The highly conserved L7/
L12 open reading frame was PCR amplifed from B. abortus and cloned into a prokaryotic expression vector, pJHL65,
dire...
Chitosan nanoparticles (CNPs) represent an efficient vaccination tool to deliver immunogenic antigens to the antigen-presenting cells (APCs), which subsequently stimulate protective immune responses against infectious diseases. Herein, we prepared CNPs encapsulating mRNA molecules followed by surface coating with conserved H9N2 HA2 and M2e influenz...
In the present study, we characterized the involvement of Lon protease in bacterial virulence and intracellular survival in Salmonella under abiotic stress conditions resembling the conditions of a natural infection. Wild type (JOL401) and the lon mutant (JOL909) Salmonella Typhimurium were exposed to low temperature, pH, osmotic, and oxidative str...
H9N2, a low pathogenic avian influenza (LPAI) virus, causes significant economic losses in the poultry industry worldwide. Herein, we describe the construction of an attenuated Salmonella Gallinarum (SG) strain for expression and delivery of H9N2 hemagglutinin (HA) 1 (SG-HA1), HA2 (SG-HA2) and/or the conserved matrix protein 2 ectodomain (SG-M2e)....
This study evaluated the attenuated Salmonella Enteritidis (SE) ghost strain JOL2114 (Δlon ΔcpxR Δasd), which displays on the bacterial surface the H1N1 hemagglutinin globular head portion (HA1; amino acid residues 63-286) on the bacterial surface for protective efficacy against Salmonella and H1N1 challenge in the chicken model, as the birds are t...
In the present study, we developed an O-antigen-deficient, live, attenuated Salmonella Typhimurium (ST) strain (JOL2377) and assessed its safety, macrophage toxicity, invasion into lymphoid tissues, immunogenicity, and protection against Salmonella infection in chickens. The JOL2377 induced significantly lower cytotoxicity and higher level of cytok...
The present study investigates the potential of SARS-CoV-2 inactivation by a copper sulfide (CuS) incorporated
three-layer mask design. The mask consisted of the outer, middle, and inner layers to give comfort, strength,
shape, and safety. The outer layer contained a total of 4.4% CuS (w/w) (2.2% CuS coated & 2.2% CuS
impregnated) nylon fibers and...
The delivery of DNA vaccines is the principle impediment for implementation of DNA vaccination on a mass scale. In this study, we report a temperature-induced conditionally expressed phage PhiX174 gene E mediated lysis of Salmonella under in vivo conditions that can increase the immunogenicity of a DNA vaccine delivered via Salmonella carrier syste...
The delivery of DNA vaccines is the principle impediment for implementation of DNA vaccination on a mass scale. In this study, we report a temperature induced conditionally expressed phage PhiX174 gene E mediated lysis of Salmonella under in vivo conditions that can increase the immunogenicity of a DNA vaccine delivered via Salmonella carrier syste...
Residual virulence is a major drawback in current Brucella vaccines. Live vaccines induce abortions in
pregnant animals. Hence, a novel anti-Brucella vaccine was developed utilizing rough Salmonella delivering
four Brucella antigens. Safety implications during pregnancy, humoral immune responses, and protective
efficacy against wild type Brucella w...
In this study, Aeromonas salmonicida subsp. salmonicida was isolated, identified by 16S RNA sequencing and its potential lytic phage (ASP-1) was isolated and characterized. The bacterium was positive for virulence genes (ascV, fla, ahyB, gcaT, lip, alt and act) and phenotypic parameters (haemolysis, slime production, lipase activity, DNase test, ge...
The present study was aimed to develop a safe and effective anti-Brucella subunit vaccine for mucosal protection
against the respiratory exposure of Brucella infection. A chitosan-based Brucella nasal vaccine (BNV) was formulated
using well-known Brucella immunogens, sodC, omp19, BLS and PrpA and tested against nasal Brucella
challenge in BALB/c mi...
While the harmful effects of lactic acid bacterial bacteriophages in the dairy industry are well-established, the importance of Bacillus subtilis-infecting bacteriophages on soybean fermentation is poorly-studied. In this study, we isolated a B. subtilis-infecting bacteriophage BSP10 from Meju (a brick of dried fermented soybean) and further charac...
An anti-Brucella vaccine candidate comprising rough Salmonella vector delivering Brucella antigens was developed. This system provides a platform for live Brucella-free vaccine development as it can mimic active-intracellular infection of Brucella organism. Exploiting this phenomenon thus provides significant protection at a single dose and also re...
Bacteriophage StAP1 was isolated from a soil sample infecting Staphylococcus aureus and S. xylosus. Its genome was found to be 135,502 base pairs (bp) long with 30.00 mol% G+C content and 192 open reading frames. While no tRNA encoding genes were identified, 7 mobile elements were found to interrupt five StAP1 open reading frames. Comparative genom...
StAP1 genome is compared with (a) Silviavirus (Remus & SA11), (b) Kayvirus (Phage K) and Twortvirus (Twort) using progressiveMauve alignment. Colored blocks indicate 1 to 1 best alignment and the sequence similarity is indicated by similarity plot within colored blocks.
Lack of a monoclonal antibody (MAb) with a high specificity and sensitivity against Staphylococcus aureus hampers easy and fast detection of the pathogen. Cell wall proteins of S. aureus were used for immunization and spleenocytes were fused with SP2/0-Ag14 cells. After cloning, SA7D6 hybridoma cells were selected for characterization due to high s...
Cell wall associated protein was isolated from Staphylococcus aureus ATCC 25923. BALB/c mice were used for immunization and immunized spleenocytes were fused with SP2/0-Ag14 cells. After cloning, hybridoma cell line 7D6 was selected for further characterization due to its specificity to the proteins used in immunization. Further characterization of...
Membrane - associated protein was prepared using Escherichia coli O157:H7 ATCC 35150. BALB/c mice were used for immunization and the immunized spleenocytes were fused with SP2/0-Ag14 cells. After cloning, hybridoma cell line 2C6 was selected for further characterization due to its high specificity to the respective surface protein used for immuniza...
Cronobacter sakazakii is a causative agent of neonatal meningitis and necrotizing enterocolitis that is isolated from reconstituted infant formula. Earlier reports suggest the involvement of the two outer membrane proteins OmpX and Inv in bacterial invasion to human enterocyte-like Caco2 and Hep2 cells. In this study, interaction between the two pr...
Cronobacter sakazakii is an opportunistic pathogen that causes neonatal meningitis and necrotizing enterocolitis. Its interaction with intestinal
epithelium is important in the pathogenesis of enteric infections. In this study, we investigated the involvement of the inv gene in the virulence of C. sakazakii ATCC 29544 in vitro and in vivo. Sequence...
Chronic renal failure (CRF), in the main agricultural region under reservoir based cascade irrigation in Sri Lanka has reached crisis proportion. Over 5,000 patients in the region are under treatment for CRF. The objective of this study is to establish the etiology of the CRF. Concentrations of nine heavy metals were determined in sediments, soils...
ABSTRACT. Metallothionein is a heavy metal binding cystein rich protein, of which is
mediated by the binding of heavy metal transcription factor (MTF-1), to its metal response
elements (MREs). But its exact signaling pathway and the structures of interacting
molecules are not very clear. In order to predict the structure of MTF-1, modeller 9v1
medi...
Questions
Questions (24)
Dear all,
I have a data frame with a very large number of columns (let's say 90,000 columns) and I want to add a column ID for each column. I know how to do it in R. But couldn't figure out the procedure in Python. Can anyone help me by demonstrating the command for it?
Thank you,
Regards,
Amal.
Hi,
For a simulated genomic analysis, I am trying to use QMSim software. Can anybody tell me how I can convert QMSim-generated output files that are in *.txt format, to plink input format? If you can provide me with a code and an appropriate program, it would be an immense help.
Thank you,
Kind regards,
Amal.
Dear All,
I have executed >1000 drug molecules in a Vina docking study. Now I have >1000 log files that contain the top ten binding scores for every compound in a log file for each. I want to extract only the lowest binding energy from each log file and get it as an output.txt file. Can anybody show me the python script for this kind of workflow?
A sample log file is attached here. It is a default Vina output file. I have over 2000 of these files in a single folder. Please see the attachment.
Thank you,
Amal.
Hello all,
I am trying to run Phamerator on Ubuntu 22.04. But I couldn't install all the required programs (1) pyro, (2) python-pygoocanvas, (3) python-mysqldb software. Can anybody help me to install and run Phamerator?
Thank you,
Kindly,
Amal.
Dear All,
This question is for r experts. I have downloaded gene expression data sets from TCGA portal. All contain data files are in tsv format. I have extracted all tsv files and copied into a single folder. Then tried to merge them into a single csv file using the following command
> df <- list.files(path = "D:/r test/Merge", full.names = TRUE) %>%
+ lapply(read_csv) %>%
+ bind_cols
However, this is not the format I want to obtain. I need only a single column that contains gene_id and expression values for all other candidates. If anybody has previous experience using TCGA portal for gene expression analysis, will you please help me to clarify this issue?
Thank you,
Amal.
I want to purchase some drug compounds from ZINC15 database. I wonder how to get a quotation to estimate the cost of selected compounds.
Thank you,
Amal.