Alexandre Reis Percequillo

University of São Paulo | USP · Departamento de Ciências Biológicas (LCB) (ESALQ)

Studies of radiations after invasion often overlook the potential role of climatic, biotic, and geologic triggers, instead focusing largely on the conduit for invasion. For example, studies of the rodent subfamily Sigmodontinae, a clade of over 500 species that radiated throughout South America during the Great American Biotic Interchange, have his...

Cytogenetics contributed to our knowledge about the diversity of a wide range of species. In this report, we present the karyotype of 28 specimens of 10 species distributed in four genera of family Echimyidae, collected in the Amazonian Forest. These rodents are between the most diverse groups of the Neotropical region and highlights the importance...

In this study, we investigated landscape variability of the carbon and nitrogen isotopic composition of nonvolant small mammals in the 3 main Brazilian biomes (Amazon, Atlantic Forest, and Cerrado) while also considering the differential spatial distribution of C 4 plants in these biomes. We compiled a subset of data on stable carbon and nitrogen i...

The Neotropics have high levels of species diversity across multiple taxonomic groups. Despite this, studies about the diversity of certain taxonomic groups are scarce. Among these taxa, the genus Nectomys Peters, 1861 (Cricetidae: Sigmodontinae), a widespread group of semi-aquatic rats that occupies forested phyto-physiognomies along rivers and st...

The limited temporal completeness and taxonomic accuracy of species lists, made available in a traditional manner in scientific publications, has always represented a problem. These lists are invariably limited to a few taxonomic groups and do not represent up-to-date knowledge of all species and classifications. In this context, the Brazilian mega...

The limited temporal completeness and taxonomic accuracy of species lists, made available in a traditional manner in scientific publications, has always represented a problem. These lists are invariably limited to a few taxonomic groups and do not represent up-to-date knowledge of all species and classifications. In this context, the Brazilian mega...

The limited temporal completeness and taxonomic accuracy of species lists, made available in a traditional manner in scientific publications, has always represented a problem. These lists are invariably limited to a few taxonomic groups and do not represent up-to-date knowledge of all species and classifications. In this context, the Brazilian mega...

The limited temporal completeness and taxonomic accuracy of species lists, made available in a traditional manner in scientific publications, has always represented a problem. These lists are invariably limited to a few taxonomic groups and do not represent up-to-date knowledge of all species and classification. In this context, the B Brazilian meg...

The reduced temporal validity of species lists made available in a traditional manner in scientific publications has always represented a problem. These lists are invariably limited to a few taxonomic groups and do not represent the up-to-date knowledge of all species and classifications. The Catálogo Taxonômico da Fauna do Brasil (CTFB), made publ...

Catálogo Taxonômico da Fauna do Brasil: se ng the baseline knowledge on the animal diversity in Brazil

Cerradomys goytaca is endemic to Brazil, found exclusively in restinga habitats, which are currently discontinuous, on the northern coast of the state of Rio de Janeiro and the southern coast of the state of Espírito Santo. Although it is common where it occurs and is covered by a conservation unit, its Extent of Occurrence (EOO) is restricted, cal...

Accurate estimates of species diversity are essential for all biodiversity research. Delimiting species and understanding the underlaying processes of speciation are also central components of systematic biology that outline our comprehension of the evolutionary mechanisms generating biodiversity. We obtained genomic data (Ultraconserved Elements a...

Species delimitation studies based on integrating different datasets such as genomic, morphometric, and cytogenetics data are rare in studies focused on Neotropical rodents. As a consequence, the evolutionary history of most of these genera remains poorly understood. Proechimys is a highly diverse and widely distributed genus of Neotropical spiny r...

The genus Euryoryzomys encompasses six species found across Cis-Andean lowland and montane rainforests in South America. One of the most enigmatic forms of the genus is found in the Brejos de altitude of north-eastern Brazil, where enclaves of dense rainforest in mountain ranges sharply contrast with surrounding semi-arid Caatinga. Here we analyse...

Scientific collections constitute a valuable source for contributions to scientific research and the training of human resources in systematics, but also other areas of biological knowledge. In this contribution, we intend to discuss these advancements in collections and the role played by FAPESP in sponsoring them, as well as a general overview of...

Ichthyomyini, a morphologically distinctive group of Neotropical cricetid rodents, lacks an integrative study of its systematics and biogeography. Since this tribe is a crucial element of the Sigmodontinae, the most speciose subfamily of the Cricetidae, we conducted a study that includes most of its recognized diversity (five genera and 19 species...

Rodents of the genus Akodon comprise 41 extant species, and are considered the most diverse genus of the tribe Akodontini. The most recently described extant species is Akodon kadiweu, known exclusively from Serra da Bodoquena, a karstic region located in Mato Grosso do Sul state, Brazil. Some sub-fossil and fossil specimens of Akodon have been rep...

The “Empty Forest” paradigm published three decades ago inspired studies on biodiversity erosion. Evidence to date continues pessimistic regarding the fate of wildlife. This calls for a more proactive approach by several societal actors to realign systems of resource exploitation with the goals of the Convention on Biological Diversity. The “Empty...

Akodon is the most diverse genus of the tribe Akodontini, comprising 41 extant species. Although distributed in a wide range of environments in South America, the genus was long considered to be absent from Amazon Forest. Nonetheless, in recent decades, records of Akodon have been reported based on specimens from southern Amazonia, throughout the c...

Mammals are charismatic organisms that play a fundamental role in ecological functions and ecosystem services, such as pollination, seed dispersal, nutrient cycling, and pest control. The state of São Paulo represents only 3% of the Brazilian territory but holds 33% of its mammalian diversity. Most of its territory is dominated by agriculture, past...

Ultraconserved Elements (UCEs) have been useful to resolve challenging phylogenies of non-model clades, unpuzzling long-conflicted relationships in key branches of the Tree of Life at both deep and shallow levels. UCEs are often reliably recovered from historical samples, unlocking a vast number of preserved natural history specimens for analysis....

Information from diversity inventories was used to study patterns of biodiversity and species distribution, to identify potential priority areas for conservation, and to guide future sampling efforts. In this context, we compiled information on non‐volant small mammal communities from the high Andes (>2000 m). Here, we present an open source datase...

The oryzomyine rodent Euryzoryzomys russatus is endemic to the Atlantic Forest of South America, where it inhabits mostly pristine humid forests. Previous phylogeographical studies performed with limited sample sizes indicated that rivers and climatic oscillations might have driven the diversification of this species. Here, we used a more comprehen...

Oryzomyini is the most diverse tribe of subfamily Sigmodontinae, comprising 30 genera and 147 extant species. Cytogenetic studies on Oryzomyini refect this diversity, revealing an exceptional range of karyotype variability, with chromosome numbers ranging from 2n=16 to 2n=88. In addition, some species exhibit autosomal and sex chromosomal polymorph...

Transdisciplinary projects are fundamental to a more effective and just conservation, but their application and coherent framing present challenges, since their nature is to bring together different epistemological backgrounds and world views. This paper identifies the possibilities offered by stakeholder mapping as a tool for generating common und...

Abiotic factors can influence genetic and phenotypic divergence in several ways, and identifying the mechanisms responsible for generating this variation is challenging. However, when evaluated in combination, ecological characteristics and genetic and phenotypic information can help us to understand how habitat preferences can influence morphologi...

Advances in our knowledge on the planet biodiversity have been largely dependent upon biological collections, and today they continue to be the cornerstone of several disciplines. Recently, the Brazilian Society of Mammalogists established the Mammal Collections Committee (CCM-SBMz) aiming to collect, organize and share information on the mammalian...

Aim: Understanding how the landscape influences gene flow is important in explaining biodiversity, especially when co-distributed taxa across heterogeneous landscapes exhibit species-specific habitat associations. Here, we test predictions about the effects of forest-type on population connectivity in two sympatric species of spiny rats that differ...

Marsh rats of the genus Holochilus are broadly distributed and inhabit several distinct environments throughout South America. As an enigmatic group with a somewhat uncertain taxonomy, the composition and names of taxa have shifted throughout history, including the boundaries of Holochilus sciureus, a species formerly distributed in the lowlands of...

Predator–prey interactions are complex relationships between both participants. Although many food items are available in the environment for a frog, it can choose to feed on one item instead of another, depending on several aspects of the prey, such as size, availability, abundance, mobility, and palatability. In this study we compared the frequen...

We studied communities of small mammals and their ticks in endemic (E) and non-endemic (NE) areas for Brazilian spotted fever (BSF), aiming to infer if diversity parameters of parasites and hosts could be related to occurrence and prevalence of rickettsial infection, especially Rickettsia rickettsii. We compared E and NE areas in human-modified lan...

Atlantic Forest (AF) is amongst the most threatened forests in the world. To decide where conservation efforts should be focused to preserve species, assessment of ecological and biogeographic processes nowadays are crucial. Patterns of the distribution of organisms can provide an important source of information underlying the biogeographical histo...

The genus Brucepattersonius currently includes eight valid species from the Atlantic Forest of south-eastern Brazil and north-eastern Argentina. Most of those species were described in the past 20 years, based on very small sample sizes: four species are known only from their type localities. Concerns on the taxonomic validity of some Brucepatterso...

Multiple proposals for transforming biodiversity conservation have been put forward, yet critical exploration of how transformative change is conceptualised in this context is lacking. Drawing on transformations to sustainability scholarship, we review recent proposals for transformative change in biodiversity conservation, considering the suggeste...

Akodon is the second most diverse genus of sigmodontine rodents, comprising 40 extant species. Widely distributed through different environments of South America, the genus ranges from forested to open-vegetation areas, from semiarid to mesic regions, and from Andean altitudes to the lowlands of eastern Brazil. In Brazil, most species are from the...

A interação entre os municípios e universidades pode fornecer poderosas ferramentas na resolução de problemas socioambientais locais. Apresentamos aqui os processos de construção e os resultados de uma dessas formas de interação. A disciplina Ecologia Aplicada é destinada aos ingressantes do curso de Ciências Biológicas da Escola Superior de Agricu...

Taxa with broad geographic ranges that occur in different biomes and exhibit plastic morphological traits and/or adaptations to particular habitats make inferences about species boundaries especially challenging. However, technological and conceptual advances in the generation and analysis of genomic data have advanced the description of biodiversi...

The tribe Oryzomyini is an impressive group of rodents, comprising 30 extant genera and an estimated 147 species. Recent remarkable advances in the understanding of the diversity, taxonomy and systematics of the tribe have mostly derived from analyses of single or few genetic markers. However, the evolutionary history and biogeography of Oryzomyini...

The Global Mammal Assessment (GMA) evaluates the risk of extinction for all species of mammals, providing important data on their status to national and global conservation agencies and conventions. We assessed all of the species of Brazilian rodents as part of the GMA activities of the International Union for the Conservation of Nature Species Sur...

Abstract.Mammalian carnivores are considered a key group in maintaining ecologicalhealth and can indicate potential ecological integrity in landscapes where they occur. Carni-vores also hold high conservation value and their habitat requirements can guide managementand conservation plans. The order Carnivora has 84 species from 8 families in the Ne...

The Andean cloud forests of western Colombia and Ecuador are home to several endemic mammals; members of the Oryzomyini, the largest Sigmodontinae tribe, are extensively represented in the region. However, our knowledge about this diversity is still incomplete, as evidenced by several new taxa that have been described in recent years. Extensive fie...

Oryzomyini represents the most diverse and speciose tribe of subfamily Sigmodontinae, with 29 genera and about 141 species. This great diversity of species is distributed from southeastern North to southern South America. Its systematics have passed through major changes in the last years due to the integration of molecular data with morphological...

Biological invasion is one of the main threats to native biodiversity. For a species to become invasive, it must be voluntarily or involuntarily introduced by humans into a nonnative habitat. Mammals were among first taxa to be introduced worldwide for game, meat, and labor, yet the number of species introduced in the Neotropics remains unknown. In...

Mammalian carnivores are considered a key group in maintaining ecological health and can indicate potential ecological integrity in landscapes where they occur. Carnivores also hold high conservation value and their habitat requirements can guide management and conservation plans. The order Carnivora has 84 species from 8 families in the Neotropica...

Aichi Target 12 of the Convention on Biological Diversity (CBD) contains the aim to ‘prevent extinctions of known threatened species’. To measure the degree to which this was achieved, we used expert elicitation to estimate the number of bird and mammal species whose extinctions were prevented by conservation action in 1993–2020 (the lifetime of th...

The most common questions made by committees in undergraduate and graduate defenses, focusing on systematic and taxonomic reviews of any taxon are regarding the species concept employed in methodology. Students' difficulty in applying species concept is greater when they use multiple datasets for species delimitation analyses. Here, we presented a...

Recently, Agnolin et al. (2019) described 14 new species of mammals, including 12 rodents, one bat, and one carnivore, and one new subspecies of rodent. In addition, these authors proposed several other nomenclatorial acts: some nominal forms were removed from synonymies and hypothesized as distinct species, at the time that three new genera, one s...

Biological invasion is one of the main threats to native biodiversity. For a species to become invasive it must be voluntarily or involuntarily introduced by humans into a non-native habitat. Mammals were among first taxa to be introduced worldwide for game, meat and labor, yet the number of species introduced in the Neotropics remains unknown. In...

Tree squirrels (Sciurinae, Sciurini) represent a diverse radiation that successfully colonized Europe, Asia and the Americas during the Miocene-Pliocene, but information on their evolutionary history remains unclear. In the Neotropics, they have been shown to exhibit the highest rate of diversification amongst all arboreal squirrels, with strikingl...

The local, global or functional extinction of species or populations of animals, known as defaunation, can erode important ecological services in tropical forests. Many mutualistic interactions, such as seed dispersal of large seeded plants, can be lost in large continuous forests due to the rarity of large-bodied mammalian frugivores. Most of stud...

Background: Tree squirrels (Sciuridae, Sciurini), in particular the highly diverse Neotropical lineages, are amongst the most rapidly diversifying branches of the mammal tree of life but also some of the least known. Negligence of this group by systematists is likely a product of the difficulties in assessing morphological informative traits and of...

Variation in primary productivity has been described for an extensive range of natural systems and may lead to remarkable bottom-up effects on consumer communities at higher trophic levels. During a standardized sampling of the small mammal assemblage in the Reserva Florestal Morro Grande, SP, Brazil, we documented a bamboo blooming followed by an...

Background: Tree squirrels (Sciuridae, Sciurini), in particular the highly diverse Neotropical lineages, are amongst the most rapidly diversifying branches of the mammal tree of life but also some of the least known. Negligence of this group by systematists is likely a product of the difficulties in assessing morphological informative traits and of...

The persistent high deforestation rate and fragmentation of the Amazon forests are the main threats to their biodiversity. To anticipate and mitigate these threats, it is important to understand and predict how species respond to the rapidly changing landscape. The short-eared dog Atelocynus microtis is the only Amazon-endemic canid and one of the...

Albinism is a rare condition in natural populations. One of the factors that would lead to higher allele frequency for the albino phenotype is bottleneck events, causing small population sizes and loss of genetic diversity. Here, we report the first record of albinism in one specimen of Proechimys gardneri from Porto Velho, Rondônia, Brazil. This i...