
Alexander EilerUniversity of Oslo · Department of Biosciences
Alexander Eiler
Professor
About
281
Publications
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Introduction
Alexander Eiler works at the Department of Biosciences, University of Oslo. Alexander does research in Ecology, Microbiology and Molecular Biology. He is also the founder of eDNA solutions Ltd a bioinformatics and eDNA research and consultant company.
Additional affiliations
June 2020 - present
eDNA solutions Ltd
Position
- Research Director
September 2018 - present
September 2018 - September 2018
Education
July 2002 - March 2007
Publications
Publications (281)
Ecological association studies often assume monotonicity such as between biodiversity and environmental properties although there is growing evidence that nonmonotonic relations dominate in nature. Here, we apply machine-learning algorithms to reveal the nonmonotonic association between microbial diversity and an anthropogenic-induced large-scale c...
Despite the importance of bacteria in aquatic ecosystems and their predictable diversity patterns across space and time, biomonitoring tools for status assessment relying on these organisms are widely lacking. This is partly due to insufficient data and models to identify reliable microbial predictors. Here, we used metabarcoding in combination wit...
Due to climate warming, ice sheets around the world are losing mass, contributing to changes in runoff, loads of nutrients and organic carbon to recipient lakes and rivers, and on a longer time span to greening of terrestrial landscapes. These changes are expected to affect microbial communities and the release of greenhouse gases from these system...
In the face of climate change, the accelerating nature crisis, and other anthropogenic impacts, conserving biodiversity demands effective monitoring. While innovative approaches have emerged to enhance biodiversity assessment, significant data gaps persist, particularly within marine ecosystems. In this study, we assess the utility of combining cit...
Occupational exposure during handling and sorting of waste has previously been identified as causative agent for occupational disease. New work operations and technological progress facilitate the waste sorting industry with means to reach global sustainability goals, however, generate unknown work-exposure scenarios.
Full-shift personal work air s...
While the strong general effects of salinity on microbial diversity are well-known and described for marine and freshwater habitats, the impact of the specific composition of major inorganic ions remains largely unexplored. In this study, we assess how microbial community structure in inland saline aquatic habitats is influenced by ionic compositio...
Despite the importance of bacteria in aquatic ecosystems and their predictable diversity patterns across space and time, biomonitoring tools for status assessment relying on these organisms are widely lacking. This is partly due to insufficient data and models to identify reliable microbial predictors. Here, we show metabarcoding in combination wit...
This study assessed microorganisms in personal inhalable work air samples aiming to identify potential human pathogens, and correlate exposure to adverse health outcomes in waste workers. Full-shift personal exposure was measured in six different waste sorting plants. Microbial concentrations in inhalable air samples were analysed using MALDI-TOF M...
Due to climate warming, ice sheets around the world are losing mass, contributing to changes across terrestrial landscapes on decadal time spans. However, landscape repercussions on climate are poorly constrained mostly due to limited knowledge on microbial responses to deglaciation. Here, we reveal the genomic succession from chemolithotrophy to p...
Lakes are significant players for the global climate since they sequester terrestrially derived dissolved organic carbon (DOC), and emit greenhouse gases like CO2 to the atmosphere. However, the differences in environmental drivers of CO2 concentrations are not well constrained along latitudinal and thus climate gradients. Our aim here is to provid...
Field-ready qPCR assays with a long shelf-life support monitoring programs for emerging aquatic pathogens and enable quick conservation and management decisions. Here, we developed, validated, and tested the shelf-life of qPCR assays targeting Gyrodactylus salaris and Aphanomyces astaci with lyophilization and air-drying.
Freshwaters represent the most threatened environments with regard to biodiversity loss and, therefore, there is a need for national monitoring programs to effectively document species distribution and evaluate potential risks for vulnerable species. The monitoring of species for effective management practices is, however, challenged by insufficien...
Boreal lakes are the most abundant lakes on Earth. Changes in acid rain deposition, climate, and catchment land use have increased lateral fluxes of terrestrial dissolved organic matter (DOM), resulting in a widespread browning of boreal freshwaters. This browning affects the aqueous communities and ecosystem processes, and boost emissions of the g...
Freshwaters represent the most threatened environments with regard to biodiversity loss and therefore there is a need for national monitoring programs to effectively document species distribution and evaluate potential risks for vulnerable species. The monitoring of species for effective management practices is, however, challenged by insufficient...
Field-ready qPCR assays with a long shelf-life support monitoring programs for emerging aquatic pathogens and enable quick conservation and management decisions. Here, we develop, validate, and test the shelf-life of qPCR assays targeting Gyrodactylus salaris and Aphanomyces astaci with lyophilization and air-drying.
The resistance and resilience provided by functional redundancy, a common feature of microbial communities, is not always advantageous. An example is nitrite oxidation in partial nitritation-anammox (PNA) reactors designed for nitrogen removal in wastewater treatment, where suppression of nitrite oxidizers like Nitrospira is sought. In these ecosys...
Environmental DNA metabarcoding universal primers targeting the hypervariable region of the 12S rRNA gene
The resistance and resilience provided by functional redundancy, a common feature of microbial communities, is not always advantageous. An example is nitrite oxidation in partial nitritation-anammox (PNA) reactors during wastewater treatment, where suppression of nitrite oxidizers like Nitrospira is sought. In these ecosystems, biofilms provide mic...
Ecological association studies often assume monotonicity such as between biodiversity and environmental properties although there is growing evidence that non-monotonic relations dominate in nature. Here we apply machine learning algorithms to reveal the non-monotonic association between microbial diversity and an anthropogenic induced large scale...
Despite the importance of prokaryotes in aquatic ecosystem and their predictable diversity patterns across space and time, biomonitoring tools relying on prokaryotes are widely lacking. Using metabarcoding, as well as other molecular methods, we were able to identify multiple prokaryotic descriptors and illustrate their reliability and advantages i...
National monitoring programs provide the basis for evaluating the integrity of ecosystems, their responses to disturbances, and the success of actions taken to conserve or recover biodiversity. In this study, we successfully established a national program for the invasive chytrid fungus Batrachochytrium dendrobatidis (Bd) based on dual TaqMan assay...
Microbial communities are major players in the biogeochemical processes and ecosystem functioning of river networks. Despite their importance in the ecosystem, biomonitoring tools relying on prokaryotes are still lacking. Only a few studies have employed both metabarcoding and quantitative techniques such as Catalyzed reported deposition fluorescen...
Members of Ponto-Caspian gobies are predatory fish which have colonized freshwaters and brackish waters in Europe and North America causing a lot changes in the native ecosystems. Several eDNA assays were developed to identify round goby fish. We are going to describe two successful assays.
A species-specific assay was developed and tested by Agersnap et al. (2017) Crayfish play important role in freshwater ecosystems. Noble crayfish "Astacus astacus" is threatened to extinct by non-indigenous species such as signal crayfish "Pacifastacus leniusculus".
Crayfish play important role in freshwater ecosystems. Noble crayfish "Astacus astacus" is threatened by non-indigenous species such as signal crayfish "Pacifastacus leniusculus".
[This corrects the article DOI: 10.3389/fmicb.2020.569879.].
Exploring microbial communities using joint molecular approaches such as CARD-FISH and 16S sequencing.
The fungus Batrachochytrium dendrobatidis (Bd) was first detected in Norway in 2017, and thus indicate the arrival of an invasive black-listed species in the country. Here we report the details of real time PCR assay which was used to screen for B. dendrobatidis from water samples collected from different locations in Norway.
The current trend of increasing input of terrestrially derived dissolved organic carbon (DOC) to boreal freshwater systems is causing increased levels of carbon dioxide (CO2) supersaturation and degassing. Phosphorus (P) is often the most limiting nutrient for bacterial growth and would thus be expected to increase overall mineralization rates and...
The antibacterial agent Triclosan (TCS) is a ubiquitous environmental contaminant due to its widespread use. Sensitivity to TCS varies substantially among eu- and pro-karyotic species and its risk for the marine environment remains to be better elucidated. In particular, the effects that TCS causes on marine microbial communities are largely unknow...
Aquatic N-fixation is generally associated with the growth and mass development of Cyanobacteria in nitrogen-deprived photic zones. However, sequenced genomes and environmental surveys suggest active aquatic N-fixation also by many non-cyanobacterial groups. Here, we revealed the seasonal variation and genomic diversity of potential N-fixers in a h...
The composition of intestinal microbiota commonly varies among animal hosts and may affect host health. However, we have limited knowledge about the different relative roles of assembly processes, such as drift, dispersal and environmental selection, for the composition of gut microbiota. Here, we conducted a field study analyzing intestinal microb...
Despite their key role in biogeochemical processes, particularly the methane cycle, archaea are widely underrepresented in molecular surveys because of their lower abundance compared to bacteria and eukaryotes. Here, we use parallel high‐resolution small subunit rRNA gene sequencing to explore archaeal diversity in 109 Swedish lakes and correlate a...
Environmental DNA metabarcoding universal primers targeting the hypervariable region of the 12S rRNA gene
The fungus Batrachochytrium dendrobatidis (Bd) was first detected in Norway in 2017, and thus indicate the arrival of an invasive black-listed species in the country. Here we report the details of real time PCR assay which was used to screen for B. dendrobatidis from water samples collected from different locations in Norway.
Environmental DNA metabarcoding universal primers targeting the hypervariable region of the 12S rRNA gene
qPCR assay to detect freshwater pearl mussels Margaritifera margaritifera in order to monitor populations in their natural environment.
This protocol explain the qPCR assay for detecting the pathogenic fungus Batrachochytrium dendrobatidis in environmental DNA samples and metabarcoding of amphibians species.
Warming climate is thawing the permafrost in arctic and subarctic regions, leading to formation of thermokarst ponds. During the formation and geomorphological succession of these ponds, carbon that has been trapped in frozen soils for thousands of years is hydrologically mobilized and returned to the active carbon cycle. We sampled 12 thermokarst...
With ongoing environmental change, it is important to understand ecosystem responses to multiple perturbations over long time scales at in situ conditions. Here, we investigated the individual and combined effects of 18 years of warming and enhanced nitrogen and sulfate deposition on peat microbial communities in a nutrient-poor boreal mire. The th...
The antibacterial agent Triclosan (TCS) is an ubiquitous environmental contaminant due to its widespread use. Sensitivity to TCS varies substantially among eu- and pro-karyotic species and its risk for the marine environment remains to be better elucidated. In particular, the effects that TCS causes on marine microbial communities are largely unkno...
The antibacterial agent Triclosan (TCS) is an ubiquitous environmental contaminant due to its widespread use. Sensitivity to TCS varies substantially among eu- and pro-karyotic species and its risk for the marine environment remains to be better elucidated. In particular, the effects that TCS causes on marine microbial communities are largely unkno...
Oxygen-stratified lakes are typical for the boreal zone and also a major source of greenhouse gas emissions in the region. Due to shallow light penetration, restricting the growth of phototrophic organisms, and large allochthonous organic carbon inputs from the catchment area, the lake metabolism is expected to be dominated by heterotrophic organis...
Preparation of PCR products for amplicon sequencing
Genome streamlining is frequently observed in free-living aquatic microorganisms and results in physiological dependencies between microorganisms. However, we know little about the specificity of these microbial associations. In order to examine the specificity and extent of these associations, we established mixed cultures from three different fre...
Oxygen stratified lakes are typical for the boreal zone, and also a major source of greenhouse gas emissions in the region. Due to shallow light penetration, restricting the growth of phototrophic organisms, and large allochthonous organic carbon inputs from the catchment area, the lake metabolism is expected to be dominated by heterotrophic organi...
Detection of endangered species is invaluable for conservation efforts, yet many traditional sampling techniques are ineffective at low population abundances or during certain periods of the year. Here, we compared results from a newly developed eDNA approach and the traditional observational method for the endangered pool frog (Pelophylax lessonae...
Marine and brackish surface waters are highly dynamic habitats that undergo repeated seasonal variations in microbial community composition and function throughout time. While succession of the various microbial groups has been well investigated, little is known about the underlying gene-expression of the microbial community. We investigated microb...
Background:
Gut microbiota provide functions of importance to influence hosts' food digestion, metabolism, and protection against pathogens. Factors that affect the composition and functions of gut microbial communities are well studied in humans and other animals; however, we have limited knowledge of how natural food web factors such as stress f...
Aquatic environments are typically not homogenous, but characterized by changing substrate concentration gradients and nutrient patches. This heterogeneity in substrate availability creates a multitude of niches allowing bacteria with different substrate utilization strategies to hypothetically coexist even when competing for the same substrate. To...
Microbial interactions between Archaea and Bacteria mediate many important chemical transformations in the biosphere from degrading abundant polymers to synthesis of toxic compounds. Two of the most pressing issues in microbial interactions are how consortia are established and how we can modulate these microbial communities to express desirable fu...
The microbial faecal pollution of rivers has wide-ranging impacts on a variety of human activities that rely on appropriate river water quality. Thus, detailed knowledge of the extent and origin of microbial faecal pollution is crucial for watershed management activities to maintain safe water use. In this study, the microbial faecal pollution leve...
High-throughput DNA sequencing technologies are increasingly used for the metagenomic characterization of microbial biodiversity. However, basic issues, such as the choice of an appropriate DNA extraction method, are still not resolved for non-model microbial communities. This study evaluates four commonly used DNA extraction methods for marine per...
Although an important fraction of the world’s lakes remains ice-covered during a large proportion of the year, little is known about the microorganisms that govern the biogeochemical processes occurring under-ice along the stratigraphic redox gradients. Reconstructed genomes provide evidence for anoxygenic photosynthesis involving fixation of carbo...
Syntrophy among Archaea and Bacteria facilitates the anaerobic degradation of organic compounds to CH 4 and CO 2 . Particularly during aliphatic and aromatic hydrocarbon mineralization, as in crude oil reservoirs and petroleum-contaminated sediments, metabolic interactions between obligate mutualistic microbial partners are of central importance ¹...
Importance:
Peatlands are major sources of the greenhouse gas methane (CH4), yet in many peatlands CO2 production from unresolved anaerobic processes exceeds CH4 production. Anaerobic degradation produces the precursors of CH4 production but also represents competing processes. We show that anaerobic degradation leading to high or low CH4 producti...
Free-living microorganisms with streamlined genomes are very abundant in the environment. Genome streamlining results in losses in the cell’s biosynthetic potential generating physiological dependencies between microorganisms. However, there exists no consensus on the specificity of these microbial associations. To verify specificity and extent of...
Planktonic bacterial community dynamics over short timescales can be of great importance for food webs and ecosystem functioning but are rarely described when microbial community and composition are assessed. To study the significance of such dynamics we sampled the surface water at the deepest point of a mesotrophic lake (Lake Erken, Sweden) every...
Understanding the distribution of taxa and associated traits across different environments is one of the central questions in microbial ecology. High-throughput sequencing (HTS) studies are presently generating huge volumes of data to address this biogeographical topic. However, these studies are often focused on specific environment types or proce...