
Aleks Owczarek- University of Melbourne
Aleks Owczarek
- University of Melbourne
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149
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Introduction
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February 1992 - present
Publications
Publications (149)
We present results for a lattice model of bio-polymers where the type of $\beta$-sheet formation can be controlled by different types of hydrogen bonds depending on the relative orientation of close segments of the polymer. Tuning these different interaction strengths leads to low-temperature structures with different types of orientational order....
We study the localisation of lattice polymer models near a permeable interface in two dimensions. Localisation can arise due to an interaction between the polymer and the interface, and can be altered by a preference for the bulk solvent on one side or by the application of a force to manipulate the polymer. Different combinations of these three ef...
The study of the effect of random impurities on the collapse of a flexible polymer in dilute solution has had recent attention with consideration of semi-stiff interacting self-avoiding walks on the square lattice. In the absence of impurities the model displays two types of collapsed phase, one of which is both anisotropically ordered and maximall...
We study self-avoiding walks on the square lattice restricted to a square box of side L weighted by a length fugacity without restriction of their end points. This is a natural model of a confined polymer in dilute solution such as polymers in mesoscopic pores. The model admits a phase transition between an ‘empty’ phase, where the average length o...
We study self-avoiding walks on the square lattice restricted to a square box of side $L$ weighted by a length fugacity without restriction of their end points. This models a confined polymer in dilute solution. The model admits a phase transition between an `empty' phase, where the average length of walks are finite and the density inside large bo...
The study of the effect of random impurities on the collapse of a flexible polymer in dilute solution has had recent attention with consideration of semi-stiff interacting self-avoiding walks on the square lattice. In the absence of impurities the model displays two types of collapsed phase, one of which is both anisotropically ordered and maximall...
We investigate semi-stiff interacting self-avoiding walks on the square lattice with random impurities. The walks are simulated using the flatPERM algorithm and the inhomogeneity is realised as a random fraction of the lattice that is unavailable to the walks. We calculate several thermodynamic and metric quantities to map out the phase diagram and...
We investigate semi-stiff interacting self-avoiding walks on the square lattice with random impurities. The walks are simulated using the flatPERM algorithm and the inhomogeneity is realised as a random fraction of the lattice that is unavailable to the walks. We calculate several thermodynamic and metric quantities to map out the phase diagram and...
We investigate the surface adsorption transition of interacting self-avoiding square lattice trails onto a straight boundary line. The character of this adsorption transition depends on the strength of the bulk interaction, which induces a collapse transition of the trails from a swollen to a collapsed phase, separated by a critical state. If the t...
We consider the phase diagram of self-avoiding walks (SAWs) on the simple cubic lattice subject to surface and bulk interactions, modeling an adsorbing surface and variable solvent quality for a polymer in dilute solution, respectively. We simulate SAWs at specific interaction strengths to focus on locating certain transitions and their critical be...
We consider self-avoiding walks terminally attached to a surface at which they can adsorb. A force is applied, normal to the surface, to desorb the walk and we investigate how the behaviour depends on the vertex of the walk at which the force is applied. We use rigorous arguments to map out some features of the phase diagram, including bounds on th...
We investigate the surface adsorption transition of interacting self-avoiding square lattice trails onto a straight boundary line. The character of this adsorption transition depends on the strength of the bulk interaction, which induces a collapse transition of the trails from a swollen to a collapsed phase, separated by a critical state. If the t...
We analyse a directed lattice vesicle model incorporating both the binding-unbinding transition and the vesicle inflation-deflation transition. From the exact solution, we derive the phase diagram for this model and elucidate scaling properties around the binding-unbinding critical point in this larger parameter space. We also consider how the phas...
We investigate the phase diagram of a self-avoiding walk model of a 3-star polymer in two dimensions, adsorbing at a surface and being desorbed by the action of a force. We show rigorously that there are four phases, a free phase, a ballistic phase, an adsorbed phase and a mixed phase where part of the 3-star is adsorbed and part is ballistic. We u...
We investigate neighbor-avoiding walks on the simple cubic lattice in the presence of an adsorbing surface. This class of lattice paths has been less studied using Monte Carlo simulations. Our investigation follows on from our previous results using self-avoiding walks and self-avoiding trails. The connection is that neighbor-avoiding walks are equ...
We study uniform 3-star polymers with one branch tethered to an attractive surface and another branch pulled by a force away from the surface. Each branch of the 3-star lattice is modelled as a self-avoiding walk on the simple cubic lattice with one endpoint of each branch joined at a common node. Recent theoretical work (Ref.~1) found four phases...
We investigate neighbor-avoiding walks on the simple cubic lattice in the presence of an adsorbing surface. This class of lattice paths has been less studied using Monte Carlo simulations. Our investigation follows on from our previous results using self-avoiding walks and self-avoiding trails. The connection is that neighbor-avoiding walks are equ...
In two dimensions polymer collapse has been shown to be complex with multiple low temperature states and multi-critical points. Recently, strong numerical evidence has been provided for a long-standing prediction of universal scaling of winding angle distributions, where simulations of interacting self-avoiding walks show that the winding angle dis...
Recently, it has been proposed that the adsorption transition for a single polymer in dilute solution, modeled by lattice walks in three dimensions, is not universal with respect to inter-monomer interactions. It has also been conjectured that key critical exponents $\phi$, measuring the growth of the contacts with the surface at the adsorption poi...
Recently, it has been proposed that the adsorption transition for a single polymer in dilute solution, modeled by lattice walks in three dimensions, is not universal with respect to inter-monomer interactions. It has also been conjectured that key critical exponents $\phi$, measuring the growth of the contacts with the surface at the adsorption poi...
In two dimensions polymer collapse has been shown to be complex with multiple low temperature states and multi-critical points. Recently, strong numerical evidence has been provided for a long-standing prediction of universal scaling of winding angle distributions, where simulations of interacting self-avoiding walks show that the winding angle dis...
We study via Monte Carlo simulation a generalisation of the so-called vertex
interacting self-avoiding walk (VISAW) model on the square lattice. The
configurations are actually not self-avoiding walks but rather restricted
self-avoiding trails (bond avoiding paths) which may visit a site of the
lattice twice provided the path does not cross itself:...
Various interacting lattice path models of polymer collapse in two dimensions
demonstrate different critical behaviours. This difference has been without a
clear explanation. The collapse transition has been variously seen to be in the
Duplantier-Saleur $\theta$-point university class (specific heat cusp), the
interacting trail class (specific heat...
We find the exact solution of three interacting friendly directed walks on
the square lattice in the bulk, modelling a system of homopolymers that can
undergo gelation by introducing two distinct interaction parameters that
differentiate between the zipping of only two or all three walks. We establish
functional equations for the model's correspond...
We provide numerical support for a long-standing prediction of universal
scaling of winding angle distributions. Simulations of interacting
self-avoiding walks show that the winding angle distribution for $N$-step walks
is compatible with the theoretical prediction of a Gaussian with a variance
growing asymptotically as $C\log N$, with $C=2$ in the...
When double stranded DNA is turned in experiments it undergoes a transition.
We use an interacting self-avoiding walk on a three-dimensional fcc lattice to
relate to these experiments and treat this problem via simulations. We provide
evidence for a thermodynamic phase transition and examine related phase
diagrams taking the solvent quality into ac...
Recently it has been argued that weighting the writhe of unknotted
self-avoiding polygons can be related to possible experiments that turn double
stranded DNA. We first solve exactly a directed model and demonstrate that in
such a subset of polygons the problem of weighting their writhe is associated
with a phase transition. We then analyse simulat...
We consider a simple lattice model of a topological phase transition in open
polymers. To be precise, we study a model of self-avoiding walks on the simple
cubic lattice tethered to a surface and weighted by an appropriately defined
writhe. We also consider the effect of pulling the untethered end of the
polymer from the surface.
Regardless of the...
We study a model of two polymers confined to a slit with sticky walls. More
precisely, we find and analyse the exact solution of two directed friendly
walks in such a geometry on the square lattice. We compare the infinite slit
limit, in which the length of the polymer (thermodynamic limit) is taken to
infinity before the width of the slit is consi...
Several recent works have considered the pressure exerted on a wall by a
model polymer. We extend this consideration to vesicles attached to a wall, and
hence include osmotic pressure. We do this by considering a two-dimensional
directed model, namely that of area-weighted Dyck paths.
Not surprisingly, the pressure exerted by the vesicle on the wal...
For a standard or canonical
ribbon from differential geometry the topological White’s theorem connects the linking number, writhe and total twist of the ribbon. Here we provide an integral expression, analog to the total twist of a canonical
ribbon, that connects linking number and writhe of two curves that do not necessarily form a canonical ribbo...
There have been separate studies of the polymer collapse transition, where
the collapse was induced by two different types of attraction. In each case,
the configurations of the polymer were given by the same subset of random walks
being self-avoiding trails on the square lattice.
Numerical evidence shows that when interacting via nearest-neighbour...
We investigate the behaviour of the mean size of directed compact percolation
clusters near a damp wall in the low-density region, where sites in the bulk
are wet (occupied) with probability $p$ while sites on the wall are wet with
probability $p_w$. Methods used to find the exact solution for the dry case
($p_w=0$) and the wet case ($p_w=1$) turn...
We find the exact solution of two interacting friendly directed walks
(modelling polymers) on the square lattice. These walks are confined to
the quarter plane by a horizontal attractive surface, to capture the
effects of DNA-denaturation and adsorption. We find the solution to the
model’s corresponding generating function by means of the
obstinate...
We revisit an integrable lattice model of polymer collapse using numerical
simulations. This model was first studied by Bl\"ote and Nienhuis in J. Phys.
A. {\bf 22}, 1415 (1989) and it describes polymers with some attraction,
providing thus a model for the polymer collapse transition. At a particular set
of Boltzmann weights the model is integrable...
Self-avoiding walks and self-avoiding trails, two models of a polymer coil in
dilute solution, have been shown to be governed by the same universality class.
On the other hand, self-avoiding walks interacting via nearest-neighbour
contacts (ISAW) and self-avoiding trails interacting via multiply-visited sites
(ISAT) are two models of the coil-globu...
We study by computer simulation a recently introduced generalized model of self-interacting self-avoiding trails on the square lattice that distinguishes two topologically different types of self-interaction: namely, crossings where the trail passes across itself and collisions where the lattice path visits the same site without crossing. This mode...
The model of directed compact percolation near a damp wall is generalized to allow for a bias in the growth of a cluster, either towards or away from the wall. The percolation probability for clusters beginning with seed width m, any distance from the wall, is derived exactly by solving the associated recurrences. It is found that the general biase...
Self-avoiding walks self-interacting via nearest neighbours (ISAW) and
self-avoiding trails interacting via multiply-visited sites (ISAT) are two
models of the polymer collapse transition of a polymer in dilute solution. On
the square lattice it has been established numerically that the collapse
transition of each model lies in a different universa...
We solve exactly a two-dimensional partially directed walk model of a semi-flexible polymer that has one end tethered to a sticky wall, while a pulling force away from the adsorbing surface acts on the free end of the walk. This model generalizes a number of previously considered adsorption models by incorporating individual horizontal and vertical...
We find, and analyse, the exact solution of two friendly directed walks,
modelling polymers, which interact with a wall via contact interactions. We
specifically consider two walks that begin and end together so as to imitate a
polygon. We examine a general model in which a separate interaction parameter
is assigned to configurations where both pol...
Key aspects of the cluster distribution in the case of directed, compact percolation near a damp wall are derived as functions of the bulk occupation probability p and the wall occupation probability pw. The mean length of finite clusters and mean number of contacts with the wall are derived exactly, and we find that both results involve elliptic i...
Area-weighted Dyck-paths are a two-dimensional model for vesicles attached to
a wall. We model the mechanical response of a vesicle to a pulling force by
extending this model.
We obtain an exact solution using two different approaches, leading to a
q-deformation of an algebraic functional equation, and a q-deformation of a
linear functional equatio...
Trails (bond-avoiding walks) provide an alternative lattice model of polymers
to self-avoiding walks, and adding self-interaction at multiply visited sites
gives a model of polymer collapse. Recently, a two-dimensional model
(triangular lattice) where doubly and triply visited sites are given different
weights was shown to display a rich phase diag...
The mean length of finite clusters is derived exactly for the case of directed compact percolation near a damp wall. We find
that the result involves elliptic integrals and exhibits similar critical behaviour to the dry wall case.
KeywordsCompact percolation–Exact solution–Mean length
We have investigated a polymer growth process on the triangular lattice where the configurations produced are self-avoiding trails. We show that the scaling behavior of this process is similar to the analogous process on the square lattice. However, while the square lattice process maps to the collapse transition of the canonical interacting self-a...
We present the exact solution of a two-dimensional directed walk model of a
drop, or half vesicle, confined between two walls, and attached to one wall.
This model is also a generalisation of a polymer model of steric stabilisation
recently investigated. We explore the competition between a sticky potential on
the two walls and the effect of a pres...
We present the solution of a linear restricted solid-on-solid (RSOS) model confined to a slit. We include a field-like energy, which equivalently weights the area under the interface, and also include independent interaction terms with both walls. This model can also be mapped to a lattice polymer model of Motzkin paths in a slit interacting with b...
Recently the effect of stiffness, or semi-flexibility, on the adsorption and also the collapse phase transitions of isolated polymers has been explored via the exact solutions of partially directed walk models. Here we consider its effect on the stretching transition mediated by the application of a force to one end of the polymer when the other en...
We derive explicit expressions for $q$-orthogonal polynomials arising in the
enumeration of area-weighted Dyck paths with restricted height.
Recently it has been shown that a two-dimensional model of self-attracting
polymers based on attracting segments with the addition of stiffness displays
three phases: a swollen phase, a globular, liquid-like phase, and an
anisotropic crystal-like phase. Here, we consider the attracting segment model
in three dimensions with the addition of stiffnes...
We present the exact solution of a three-dimensional lattice model of a polymer confined between two sticky walls, that is within a slab. We demonstrate that the model behaves in a similar way to its two-dimensional analogues and agrees with Monte Carlo evidence based upon simulations of self-avoiding walks in slabs. The model on which we focus is...
A directed polymer model has been used by Alcaraz et al to reflect properties related to models of quantum entanglement in far from equilibrium stationary states. Here we calculate exactly one property related to entanglement: the average height of the polymer from the surface. In doing so we extend a well known method of exact solution for directe...
Recently it was shown that the introduction of stiffness into the model of self-interacting partially directed walks modifies the polymer collapse transition seen from a second-order to a first-order one. Here we consider the effect of stiffness on the adsorption transition. We provide the exact generating function for non-interacting semi-flexible...
Self-avoiding walk models of a polymer confined between two parallel attractive walls in two and three dimensions (slits and
slabs, respectively) have recently had a revival of interest. They were first studied as simple models of steric stabilisation
and sensitised flocculation in colloids. The revival has been catalysed by new exact solution tech...
We investigate a two-dimensional problem of an isolated self-interacting end-grafted polymer, pulled by one end. In the thermodynamic limit, we find that the model has only two different phases, namely a collapsed phase and a stretched phase. We show that the phase diagram obtained by Kumar [Phys. Rev. Lett. 98, 128101 (2007)] for small systems, wh...
A polymer is a long chain molecule of repeated chemical units, monomers. A ring polymer is simply a polymer whose ends have been joined so that topologically the molecule forms a circle. Lattice polygons are useful models of the configurational properties of flexible ring polymers in dilute solution in so-called “good” solvents. Good solvents are t...
The percolation probability for directed, compact percolation near a damp wall, which interpolates between the previously examined cases, is derived exactly. We find that the critical exponent β = 2 in common with the dry wall, rather than the value previously found in the wet wall and bulk cases. The solution is found via a mapping to a particular...
We consider directed path models of a selection of polymer and vesicle problems. Each model is used to illustrate an important
method of solving lattice path enumeration problems. In particular, the Temperley method is used for the polymer collapse
problem. The ZL method is used to solve the semi-continuous vesicle model. The Constant Term method i...
We investigate a two-dimensional problem of an isolated self-interacting end-grafted polymer, pulled by one end. In the thermodynamic limit, we find that the model has only two different phases, namely a collapsed phase and a stretched phase. We show that the phase diagram obtained by Kumar {\it at al.\} [Phys. Rev. Lett. {\bf 98}, 128101 (2007)] f...
We consider a directed walk model of a homopolymer (in two dimensions) which is self-interacting and can undergo a collapse transition, subject to an applied tensile force. We review and interpret all the results already in the literature concerning the case where this force is in the preferred direction of the walk. We consider the force extension...
Recently it has been shown that a two-dimensional model of self-attracting polymers based on attracting segments displays two phase transitions, a theta-like collapse between swollen polymers and a globular state and another between the globular state and a polymer crystal. On the other hand, the canonical model based on attracting monomers on latt...
We investigate the addition of stiffness to the lattice model of hydrogen-bonded polymers in two and three dimensions. We find that, in contrast to polymers that interact via a homogeneous short-range interaction, the collapse transition is unchanged by any amount of stiffness: this supports the physical argument that hydrogen bonding already intro...
We investigate the addition of stiffness to the lattice model of hydrogen-bonded polymers in two and three dimensions. We find that, in contrast to polymers that interact via a homogeneous short-range interaction, the collapse transition is unchanged by any amount of stiffness: this supports the physical argument that hydrogen bonding already intro...
The number of free sites next to the end of a self-avoiding walk is known as the atmosphere. The average atmosphere can be related to the number of configurations. Here we study the distribution of atmospheres as a function of length and how the number of walks of fixed atmosphere scale. Certain bounds on these numbers can be proved. We use Monte C...
We present results for a lattice model of polymers where the type of beta sheet formation can be controlled by different types of hydrogen bonds depending on the relative orientation of close segments of the polymer. Tuning these different interaction strengths leads to low-temperature structures with different types of orientational order. We perf...
We provide the exact generating function for semi-flexible and super-flexible interacting
partially directed walks and also analyse the solution in detail. We demonstrate that
while fully flexible walks have a collapse transition that is second order and obeys
tricritical scaling, once positive stiffness is introduced the collapse transition become...
The exact solution of directed self-avoiding walks confined to a slit of finite width and interacting with the walls of the slit via an attractive potential has been calculated recently. The walks can be considered to model the polymer-induced steric stabilisation and sensitised floculation of colloidal dispersions. The large width asymptotics led...
We study quasi-wetting transitions in confined systems in which capillary condensation is suppressed. In particular, we are concerned with adsorbates between opposing walls (one wall favours wetting, the other drying). We employ an Ising model and calculate the global phase diagram for a slab of width L and boundaries with opposite surface fields,...
We investigate the existence and location of the surface phase known as the "Surface-Attached Globule" (SAG) conjectured previously to exist in lattice models of three-dimensional polymers when they are attached to a wall that has a short range potential. The bulk phase, where the attractive intra-polymer interactions are strong enough to cause a c...
We analyse exact enumeration data and Monte Carlo simulation results for a self-avoiding walk model of a polymer confined between two parallel attractive walls (plates). We use the exact enumeration data to establish the regions where the polymer exerts an effective attractive force between the plates and where the polymer exerts an effective repul...
We investigate a lattice model of polymers where the nearest-neighbour monomer-monomer interaction strengths differ according to whether the local configurations have so-called ``hydrogen-like'' formations or not. If the interaction strengths are all the same then the classical $\theta$-point collapse transition occurs on lowering the temperature,...
We study mean unknotting times of knots and knot embeddings by crossing reversals, in a problem motivated by DNA entanglement. Using self-avoiding polygons (SAPs) and self-avoiding polygon trails (SAPTs) we prove that the mean unknotting time grows exponentially in the length of the SAPT and at least exponentially with the length of the SAP. The pr...
We introduce a new class of models for polymer collapse, given by random walks on regular lattices which are weighted according to multiple site visits. A Boltzmann weight omegal is assigned to each (l+1)-fold visited lattice site, and self-avoidance is incorporated by restricting to a maximal number K of visits to any site via setting omegal=0 for...
We firstly review the constant term method (CTM), illustrating its combinatorial connections and show how it can be used to solve a certain class of lattice path problems. We show the connection between the CTM, the transfer matrix method (eigenvectors and eigenvalues), partial difference equations, the Bethe Ansatz and orthogonal polynomials. Seco...
The numerical analysis of combinatorial problems with non-standard scaling is an important testing ground for the limits of current techniques. One problem that has proven especially difficult to analyse with all available numerical techniques, including various Monte Carlo simulation methods and careful series analysis, is anisotropic spiral walks...
Recently, an exhaustive study has been made of the corrections-to-scaling for the number of, and various size measures (eg. radius of gyration) of, self-avoiding walks on the various two-dimensional lattices. This study gave compelling evidence that the first non-analytic correction-to-scaling has exponent 1 = 3⁄2. However, there also exist predict...
The collapse transition of an isolated polymer has been modelled by many different approaches, including lattice models based on self-avoiding walks and self-avoiding trails. In two dimensions, previous simulations of kinetic growth trails, which map to a particular temperature of interacting self-avoiding trails, showed markedly different behaviou...
We consider a self-avoiding walk confined between two parallel planes (or lines), with an energy term associated with each vertex of the walk in the confining planes. We allow the energy terms to be different for the top and bottom planes. We use exact enumeration and Monte Carlo methods to investigate the force between the confining planes and how...
We present the exact solutions of various directed walk models of polymers confined to a slit and interacting with the walls of the slit via an attractive potential. We consider three geometric constraints on the ends of the polymer and concentrate on the long chain limit. Apart from the general interest in the effect of geometrical confinement thi...
A self-interacting polymer with one end attached to a sticky surface has been studied by means of a flat-histogram stochastic growth algorithm known as FlatPERM. We examined the four-dimensional parameter space of the number of monomers (up to 91), self-attraction, surface-attraction and pulling force applied to one end of the polymer. Using this p...
In this paper we present simulations of a surface-adsorbed polymer subject to an elongation
force. The polymer is modelled by a self-avoiding walk on a regular lattice. It is confined to
a half-space by an adsorbing surface with attractions for every vertex of the walk visiting
the surface, and the last vertex is pulled perpendicular to the surface...
An infinite hierarchy of layering transitions exists for model
polymers in solution under poor solvent or low temperatures and
near an attractive surface. A flat histogram stochastic growth
algorithm known as FlatPERM has been used on a self- and surface
interacting self-avoiding walk model for lengths up to 256. The
associated phases exist as stab...
We present Monte Carlo simulations of the coil-globule transition for interacting self-avoiding walks (ISAW) and interacting self-avoiding trails (ISAT) on the hyper-cubic lattice in four and five dimensions, performed with the PERM algorithm. We find that the second-order nature of the coil-globule transition is masked by pseudo-first-order behavi...
We consider a network model, embedded on the Manhattan lattice, of a quantum localization problem belonging to symmetry class C. This arises in the context of quasiparticle dynamics in disordered spin-singlet superconductors which are invariant under spin rotations but not under time reversal. A mapping exists between problems belonging to this sym...
Two-step restricted walk (TSRW) models are a class of restricted self-avoiding walk (SAW) where, in addition to the self-avoidance constraint, certain restrictions are placed upon each pair of successive steps. In this paper, we explore the relationship between the restrictions and the scaling of the average size of walks in three-dimensional model...
Recently questions have been raised as to the conclusions that can be drawn from currently proposed scaling theory for a single polymer in various types of solution in two and three dimensions. Here we summarize the crossover theory predicted for low dimensions and clarify the scaling arguments that relate thermal exponents for quantities on approa...
In a recent article on stretched polymers in a poor solvent by Grassberger and Hsu \cite{grassberger2002a-a} questions were raised as to the conclusions that can be drawn from currently proposed scaling theory for a single polymer in various types of solution in two and three dimensions. Here we summarise the crossover theory predicted for low dime...
We consider a network model, embedded on the Manhattan lattice, of a quantum localisation problem belonging to symmetry class C. This arises in the context of quasiparticle dynamics in disordered spin-singlet superconductors which are invariant under spin rotations but not under time reversal. A mapping exists between problems belonging to this sym...
Monte Carlo simulations, using the PERM algorithm, of interacting self-avoiding walks (ISAW) and interacting self-avoiding trails (ISAT) in five dimensions are presented which locate the collapse phase transition in those models. It is argued that the appearance of a transition (at least) as strong as a pseudo-first-order transition occurs in both...
We present results for the generating functions of single fully-directed walks on the triangular lattice, enumerated according to each type of step and weighted proportional to the area between the walk and the surface of a half-plane (wall), and the number of contacts made with the wall. We also give explicit formulae for total area generating fun...
We present results for the generating functions of polygons and more general objects that can touch, constructed from two fully directed walks on the infinite triangular lattice, enumerated according to each type of step and weighted proportional to the area and the number of contacts between the directed sides of the objects. In general these dire...
Human alpha(1)-acid glycoprotein (AGP) or orosomucoid (ORM) is a major acute phase protein that is thought to play a crucial role in maintaining homeostasis. Human AGP is the product of a cluster of at least two adjacent genes located on HSA chromosome 9. Using a range of restriction endonucleases we have investigated DNA variation at the locus enc...
The coil-globule transition of an isolated polymer has been well established to be a second-order phase transition described by a standard tricritical O(0) field theory. We present Monte-Carlo simulations of interacting self-avoiding walks and interacting self-avoiding trails in four dimensions which provide compelling evidence that the approach to...
We consider the mathematical properties of the generating and partition functions in the two variable scaling region about the tricritical point in some models of polymer collapse. We concentrate on models that have a similar behaviour to that of interacting partially-directed self-avoiding walks (IPDSAW) in two dimensions. However, we do not restr...
Year JNL vol pages
In two dimensions the universality classes of self-avoiding walks on the square lattice, restricted by allowing only certain two-step configurations to occur within each walk, has been argued to be determined primarily by the symmetry of the set of allowed two-step configurations. In a recent paper (Rechnitzer A and Owczarek A L...
We examine self-avoiding walks in dimensions 4 to 8 using high-precision Monte Carlo simulations up to length N = 16 384, providing the first such results in dimensions d > 4 on which we concentrate our analysis. We analyse the scaling behaviour of the partition function and the statistics of nearest-neighbour contacts, as well as the average geome...
We study a proper subset of polyominoes, called polygonal polyominoes, which are defined to be self-avoiding polygons containing any number of holes, each of which is a self-avoiding polygon. The staircase polygon subset, with staircase holes, is also discussed. The internal holes have no common vertices with each other, nor any common vertices wit...
We have simulated four-dimensional interacting self-avoiding trails (ISAT) on the hypercubic lattice with standard interactions at a wide range of temperatures up to length 4096 and at some temperatures up to length 16384. The results confirm the earlier prediction (using data from a non-standard model at a single temperature) of a collapse phase t...