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Publications (108)
Unlike most rivers globally, nearly all lowland Amazonian rivers have unregulated
flow, supporting seasonally flooded floodplain forests. Floodplain forests harbor a
unique tree species assemblage adapted to flooding and specialized fauna, including
fruit-eating fish that migrate seasonally into floodplains, favoring expansive floodplain
areas....
Leaf and wood functional traits of trees are related to growth, reproduction, and survival, but the degree of phylogenetic conservatism in these relationships is largely unknown. In this study, we describe the variability of strategies involving leaf, wood and demographic characteristics for tree genera distributed across the Amazon Region, and qua...
We describe the geographical variation in tree species composition across Amazonian forests and show how environmental conditions are associated with species turnover. Our analyses are based on 2023 forest inventory plots (1 ha) that provide abundance data for a total of 5188 tree species. Within-plot species composition reflected both local enviro...
The Neotropical clade of Lecythidaceae—Lecythidoideae—comprises 10 genera and more than 230 woody species that are usually rainforest trees. Lecythidoideae range from Mexico to southeast Brazil but are most diverse and abundant in the central Amazon and Guiana Shield regions. Previous studies found weak support for monophyly in the two species rich...
Colli-Silva et al.1 recently proposed that cupuaçu (Theobroma grandiflorum) was domesticated in northwestern Amazonia as a selection from its sister species, cupuí (T. subincanum). This proposal ignores long-term research in taxonomy, botany, biogeography, and genetics about Theobroma, including cupuaçu. Our review of the research that was ignored...
Aim: Amazonia hosts more tree species from numerous evolutionary lineages, both young and ancient, than any other biogeographic region. Previous studies have shown that tree lineages colonized multiple edaphic environments and dispersed widely across Amazonia, leading to a hypothesis, which we test, that lineages should not be strongly associated w...
Mycorrhizae, a form of plant–fungal symbioses, mediate vegetation impacts on ecosystem functioning. Climatic effects on decomposition and soil quality are suggested to drive mycorrhizal distributions, with arbuscular mycorrhizal plants prevailing in low-latitude/high-soil-quality areas and ectomycorrhizal (EcM) plants in high-latitude/low-soil-qual...
The genus Pouteria (Sapotaceae Juss.) was considered one of the largest genera in the Neotropics, however, phylogenetic studies have proven that many of its species belong to other genera. However, Pouteria s.l. it still has many species complexes with great leaf plasticity and overlapping morphological characters, as is the case of the species P....
Habitat fragmentation could potentially affect tree architecture and allometry. Here, we use ground surveys of terrestrial LiDAR in Central Amazonia to explore the influence of forest edge effects on tree architecture and allometry, as well as forest biomass, 40 years after fragmentation. We find that young trees colonising the forest fragments hav...
ARTICLE Mapping density, diversity and species-richness of the Amazon tree flora Using 2.046 botanically-inventoried tree plots across the largest tropical forest on Earth, we mapped tree species-diversity and tree species-richness at 0.1-degree resolution, and investigated drivers for diversity and richness. Using only location, stratified by fore...
Pouteria reticulata (Engl.) Eyma (Sapotaceae Juss.) is a widely distributed species, from southern Mexico to Brazil, and presents great phenotypic plasticity in leaf size and shape. Such plasticity raises doubts regarding the identification of specimens in collections, and the use of different tools is important to aggregate information for taxonom...
Macrolobium paulobocae is presented as a new species of the legume subfamily Detarioideae. It is restricted to seasonally flooded igapó forests in the Central Amazon. We provide a description, illustration, photographs, and a distribution map of the new species, as well as a table of comparative morphology with similar, likely phylogenetically rela...
Introduction
Tropical forests harbor a large diversity of closely related tree species that can thrive across habitats. This biodiversity has been found to correspond to large functional diversity in aboveground traits, and likely also relates to belowground trait variation. Globally, root trait (co-)variation is driven by different belowground res...
Trees adjust their architecture to acclimate to various external stressors, which regulates ecological functions that are needed for growth, reproduction, and survival. Human activities, however, are fragmenting natural habitats apace and could affect tree architecture and allometry, but quantitative assessments remain lacking. Here, we leverage gr...
In a time of rapid global change, the question of what determines patterns in species abundance distribution remains a priority for understanding the complex dynamics of ecosystems. The constrained maximization of information entropy provides a framework for the understanding of such complex systems dynamics by a quantitative analysis of important...
Aim
To investigate the geographic patterns and ecological correlates in the geographic distribution of the most common tree dispersal modes in Amazonia (endozoochory, synzoochory, anemochory and hydrochory). We examined if the proportional abundance of these dispersal modes could be explained by the availability of dispersal agents (disperser‐avail...
Plant distribution patterns may indicate habitat specialization either by closely related species with conserved traits or by phylogenetically distant species with converging traits. Lianas represent a large proportion of the overall tropical species diversity and abundance. Despite their importance, little is known about the relationship between h...
In this study, we analyze the demographic rates and biomass dynamics of Lecythidaceae in a 100-ha permanent forest plot in the Central Amazon. We characterize habitats in the plot, analyze the effect of habitat on tree density, species richness, and biomass and demographic dynamics, and quantify significant species habitat associations. The plot ex...
Myrcia is the sole genus of the Myrciinae, one of the nine subtribes of Myrteae (Myrtaceae). The Amazon forest holds about one-quarter of the Brazilian species of Myrcia, but the genus is still understudied in this whole region. In this context, this study presents a floristic survey of Myrcia in the permanent plots of the Biological Dynamics of Fo...
Forest conservation and management programs rely on precise knowledge of local tree diversity. Distinguishing tree species is a major concern in tropical forest inventories as morphology alone may not be sufficient for species identifications in those highly diverse environments. Therefore, a multi-evidence approach is desirable to avoid subjective...
Forest conservation and management programs rely on precise knowledge of local tree diversity. Distinguishing tree species is a major concern in tropical forest inventories as morphology alone may not be sufficient for species identifications in those highly diverse environments. A multi-evidence approach is therefore desirable to avoid subjective...
Humiria balsamifera is an infraspecific complex of high phenotypic variation and widely distributed in northern South America. Leaf traits are traditionally considered the most relevant taxonomic characters for varietal level delimitation in the group. However, substantial phenotypic overlap among vegetative characters complicates taxonomic diagnos...
The forests of Amazonia are among the most biodiverse plant communities on Earth. Given the immediate threats posed by climate and land-use change, an improved understanding of how this extraordinary biodiversity is spatially organized is urgently required to develop effective conservation strategies. Most Amazonian tree species are extremely rare...
Recent studies have leveraged large datasets from plot-inventory networks to report a phenomenon of hyperdominance in Amazonian tree communities, concluding that few species are common and many are rare. However, taxonomic hypotheses may not be consistent across these large plot networks, potentially masking cryptic diversity and threatened rare ta...
In a time of rapid global change, the question of what determines patterns in species abundance distribution remains a priority for understanding the complex dynamics of ecosystems. The constrained maximization of information entropy provides a framework for the understanding of such complex systems dynamics by a quantitative analysis of important...
The forests of Amazonia are among the most biodiverse plant communities on Earth. Given the immediate threats posed by climate and land-use change, an improved understanding of how this extraordinary biodiversity is spatially organized is urgently required to develop effective conservation strategies. Most Amazonian tree species are extremely rare...
O objetivo deste estudo foi avaliar as condições climáticas adequadas para prever a distribuição de Carapa guianensis Aubl. no presente e no futuro, considerando diferentes cenários de mudanças climáticas. Utilizando registros de presença com coordenadas geográficas disponíveis em banco de dados e variáveis bioclimáticas explicativas do WorldClim,...
Myrcia is the sole genus of the Myrciinae, one of the nine subtribes of Myrteae (Myrtaceae). The Amazon forest holds about one-quarter of the Brazilian species of Myrcia, but the genus is still understudied in this whole region. In this context, this study presents a floristic survey of Myrcia in the permanent plots of the Biological Dynamics of Fo...
Tropical biomes are the most diverse plant communities on Earth, and quantifying this diversity at large spatial scales is vital for many purposes. As macroecological approaches proliferate, the taxonomic uncertainties in species occurrence data are easily neglected and can lead to spurious findings in downstream analyses. Here, we argue that techn...
Three new Amazonian species of the Myrcia splendens group from Brazil are proposed based on morphology and near-infrared spectroscopy of leaves and compared with similar taxa. Myrcia eveae resembles M. splendens and may be recognised mostly by large and oblong leaf blades that tapers abruptly at the apex and large bracts; Myrcia otocalyx also resem...
Amazonian forests are extraordinarily diverse, but the estimated species richness is very much debated. Here, we apply an ensemble of parametric estimators and a novel technique that includes conspecific spatial aggregation to an extended database of forest plots with up-to-date taxonomy. We show that the species abundance distribution of Amazonia...
Amazonian forests are extraordinarily diverse, but the estimated species richness is very much debated. Here, we apply an ensemble of parametric estimators and a novel technique that includes conspecific spatial aggregation to an extended database of forest plots with up-to-date taxonomy. We show that the species abundance distribution of Amazonia...
Amazonian forests are extraordinarily diverse, but the estimated species richness is very much debated. Here, we apply an ensemble of parametric estimators and a novel technique that includes conspecific spatial aggregation to an extended database of forest plots with up-to-date taxonomy. We show that the species abundance distribution of Amazonia...
Amazonian forests are extraordinarily diverse, but the estimated species richness is very much debated. Here, we apply an ensemble of parametric estimators and a novel technique that includes conspecific
spatial aggregation to an extended database of forest plots with up-to-date taxonomy. We show that the species abundance distribution of Amazonia...
Amazonian forests are extraordinarily diverse, but the estimated species richness is very much debated. Here, we apply an ensemble of parametric estimators and a novel technique that includes conspecific spatial aggregation to an extended database of forest plots with up-to-date taxonomy. We show that the species abundance distribution of Amazonia...
White sand ecosystems (WSE) occur in nutrient-poor sandy soils patchily distributed throughout the lowlands of Amazonia. The diversification and current patterns of diversity of birds and plants specialized to the WSE were likely affected by abiotic conditions in very different ways relative to those in the upland Terra Firme forest, which has been...
Protium santamariae is described and illustrated. The new species is restricted to the Pacific Coast of Costa Rica but shares morphological similarities with two South American species, P. kleinii and P. krukoffii. We provide a description, a distribution map, notes on its taxonomy, and a key to distinguish it from morphologically similar species.
Amazonian forests are extraordinarily diverse, but the estimated species richness is very much debated. Here, we apply an ensemble of parametric estimators and a novel technique that includes conspecific spatial aggregation to an extended database of forest plots with up-to-date taxonomy. We show that the species abundance distribution of Amazonia...
The association of the ant Myrcidris epicharis with the plant Myrcia magna is reported for the first time. This association was registered in two localities along the Negro river basin, in the region of Manaus, Amazonas state, Brazil. The ants inhabit swollen shoots in apical and subjacent nodes of the branches. This record represents the second pl...
Here, we examine the influence of the spatial distribution of open white‐sand campina (WSC) in the Amazon on the species richness and beta diversity of their vascular plants. It is well known that beta diversity tends to increase with geographical distance, but the influence of habitat insularity on floristic composition and endemism is still uncle...
Tropical forests are known for their high diversity. Yet, forest patches do occur in the tropics where a single tree species is dominant. Such “monodominant” forests are known from all of the main tropical regions. For Amazonia, we sampled the occurrence of monodominance in a massive, basin-wide database of forest-inventory plots from the Amazon Tr...
Tropical forests are known for their high diversity. Yet, forest patches do occur in the tropics where a single tree species is dominant. Such "monodominant" forests are known from all of the main tropical regions. For Amazonia, we sampled the occurrence of monodominance in a massive, basin-wide database of forest-inventory plots from the Amazon Tr...
Tropical forests are known for their high diversity. Yet, forest patches do occur in the tropics where a single tree species is dominant. Such "monodominant" forests are known from all of the main tropical regions. For Amazonia, we sampled the occurrence of monodominance in a massive, basin-wide database of forest-inventory plots from the Amazon Tr...
We present the amended description of the species Acmanthera minima and A. parviflora based on specimens collected in the Lower Negro River basin and the Serra do Aracá National Park, respectively, in the Amazonas State, Brazil. We also provide photographs, a distribution map, notes on conservation status and a key to all species of the genus Acman...
The new species Myrcia psammophila is here described, illustrated and compared with M. grandis and M. umbraticola, two morphologically similar taxa. It may be distinguished from these two latter species based on possession of leaves with corky petiole and raised midvein adaxially, and distinctly pedicellate flowers with squared staminal ring and se...
Schoepfia clarkii is a rare species of Schoepfiaceae that to date has been known only from the single flowering specimen used in the original description from white-sand vegetation in Venezuela. Here we report new records for this species collected from the lower Negro River basin in Brazil, ca. 900 km from the type locality, but also from white-sa...
Symbiotic nitrogen (N)‐fixing trees can provide large quantities of new N to ecosystems, but only if they are sufficiently abundant. The overall abundance and latitudinal abundance distributions of N‐fixing trees are well characterised in the Americas, but less well outside the Americas.
Here, we characterised the abundance of N‐fixing trees in a n...
Species delimitation remains a challenge worldwide, but especially in biodiversity hotspots such as the Amazon. Here, we use an integrative taxonomic approach that combines data from morphology, phylogenomics, and leaf spectroscopy to clarify the species limits within the Protium heptaphyllum species complex, which includes subsp. cordatum, subsp....
Old-growth tropical forests harbor an immense diversity of tree species but are rapidly being cleared, while secondary forests that regrow on abandoned agricultural lands increase in extent. We assess how tree species richness and composition recover during secondary succession across gradients in environmental conditions and anthropogenic disturba...
Photos by Francisco Farroñay. Produced by: Francisco Farroñay © Francisco Farroñay [ffarro667@gmail.com]. Acknowledgments to CAPES for the fellowship, and CEMBAM-PPBIO Group for logistical support fieldguides.fieldmuseum.org] [1129] version 1
Species complexes are common in the Neotropical flora, and the Pagamea guianensis complex is one of the most widespread groups of species in the Amazonian white-sand flora. Previous analyses suggested the occurrence of ten species in this group, but species limits remained unclear due to poor sampling, morphological overlap and low molecular variat...
Final report of scientific initiation program
The main objectives of this project were to reduce the proportion of Sapotaceae samples that remain identified as morphotypes in the BDFFP collection; and to check the identification of those that already have a scientific name. The results reveal that the spectral data at the generic level are able to validate the genera in 90%, however, in the sp...
Aim
To examine the contribution of large‐diameter trees to biomass, stand structure, and species richness across forest biomes.
Location
Global.
Time period
Early 21st century.
Major taxa studied
Woody plants.
Methods
We examined the contribution of large trees to forest density, richness and biomass using a global network of 48 large (from 2 t...
This document summarizes the BDFFP Sapotaceae data, with an indication of other NIR and Silica data that we have for the BDFFP species. This document can be updated with data downloaded from the Sapotaceae TUDO projects of the BDFFP plants, botam, and uatuma databases. Table 1 contains the names of all the databases, with an indication of the BDFFP...
Species distribution models (SDMs) are widely used in ecology and conservation. Presence-only SDMs such as MaxEnt frequently use natural history collections (NHCs) as occurrence data, given their huge numbers and accessibility. NHCs are often spatially biased which may generate inaccuracies in SDMs. Here, we test how the distribution of NHCs and Ma...
Belongs to paper Species Distribution Modelling: Contrasting presence-only models with plot abundance data by Gomes et al.
Comparing the results of modelling the area of occupancy with MaxEnt and with inverse distance weighting (IDW).
Analysis results for the predicted area of occupancy as calculated by Maxent and IDW methods. The analyses were conducted for 170 of all 227 hyperdominant species that had MaxEnt’s predicted environmental suitability significantly differ...
Species distribution models (SDMs) are widely used in ecology and conservation. Presence-only SDMs such as MaxEnt frequently use natural history collections (NHCs) as occurrence data, given their huge numbers and accessibility. NHCs are often spatially biased which may generate inaccuracies in SDMs. Here, we test how the distribution of NHCs and Ma...
Na região do Baixo Rio Negro (região de Manaus e Novo Airão, Amazonas), a madeira de espécies de itaúba tem sido um dos recursos florestais historicamente mais explorados, especialmente para a construção de embarcações. Apesar do intenso uso e da importância deste recurso para a economia e cultura local, pouco se sabe sobre a biologia e ecologia de...
Final report of scientific initiation program
We analyze forest structure, diversity, and dominance in three large-scale Amazonian forest dynamics plots located in Northwestern (Yasuni and Amacayacu) and central (Manaus) Amazonia, to evaluate their consistency with prevailing wisdom regarding geographic variation and the shape of species abundance distributions, and to assess the robustness of...