Aaron Lim

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• PhD
• Lecturer at University College Cork

Multibeam backscatter has proven to be a useful tool in deciphering seabed sediments. While traditional image-based backscatter processing methods are commonly used, signal-based approaches such as Angular Range Analysis (ARA) offer a robust sediment-characterisation, albeit with a relatively low spatial-resolution. Thus, this research aims to impr...

This study explores microplastic and cellulosic microparticle occurrences in the NE Atlantic, focusing on the Porcupine Bank Canyon and Porcupine Seabight. Water samples from depths ranging between 605 and 2126 m and Lophelia pertusa coral samples from 950 m depth were analysed. Microparticles were detected in deep-water habitats, with concentratio...

Modern cold-water corals (CWCs) occur in a wide range of water depths, with Desmophyllum pertusum being one of the most common species. Pleistocene, Holocene, and modern coral mound formation by living CWC reefs have previously been described in the Porcupine Seabight from water depths greater than 700 m in the vicinity of the transitional zone bet...

The Confined Morphologies Mapping (CoMMa) Toolbox, a novel ArcGIS Pro python toolbox expressly created for semi-automated seabed morphological mapping, is presented here. The toolbox includes a selection of tools for the pre-processing, delineation and description of confined features on a digital elevation model (DEM) that are either negative or p...

The Irish continental margin (ICM) encompasses many complex sedimentary basins and diverse geomorphological features displaying bedrock outcrops where a large variety of habitats can be observed. This large area of seabed extends over >400,000 km² and cannot be mapped manually or in a standardized way. Novel bedrock suitability mapping is applied t...

The Irish Shelf Seabed Geomorphological Map (ISSGM) (v2023) presented here, is the first high-resolution geomorphological map of the entire Irish continental shelf. This large-scale mapping exercise took advantage of the vast INFOMAR multibeam echosounder dataset, and used a protocol of semi-automated mapping techniques to accurately and rapidly ex...

The Irish–Scottish margin is geologically and oceanographically heterogeneous. Source waters of subpolar and subtropical origin interact with banks, seamounts, submarine canyon systems, escarpments, and mound provinces resulting in rich and diverse benthic communities that are influenced by local and regional hydrodynamics (e.g., internal waves, ti...

In this study we applied for the first time Fully Convolutional Neural Networks (FCNNs) to a marine bathymetric dataset to derive morphological classes over the entire Irish continental shelf. FCNNs are a set of algorithms within Deep Learning that produce pixel-wise classifications in order to create semantically segmented maps. While they have be...

Lithic sedimentary benthic habitats are often organised by the overlying hydrodynamic regime, generating seabed sedimentary bedforms (SSBs) whose morphology and sediment composition are controlled by the current flow properties including speed, direction, and duration. Furthermore, SSBs can manifest at a variety of spatial scales reflecting differe...

The characterisation of particle shape is an important analysis in the field of sedimentary geology. At finer scales, it is key for understanding sediment transport while at coarser scales, such as boulders, it is vital for coastal protection. However, the accurate characterisation of particle shape is restricted by the application of 2D imaging fo...

Structure-from-Motion (SfM) photogrammetry is a time and cost-effective method for high-resolution 3D mapping of cold-water corals (CWC) reefs and deep-water environments. The accurate classification and analysis of marine habitats in 3D provide valuable information for the development of management strategies for large areas at various spatial and...

Within the Porcupine Bank Canyon (NE Atlantic), cold-water coral (CWC) mounds are mostly found clustered along the canyon lip, with individual disconnected mounds occurring nearby on the western Porcupine Bank. Remotely operated vehicle-mounted vibrocoring was utilized to acquire cores from both of these sites. This study is the first to employ thi...

Cold-water coral (CWC) reefs are considered “hotspots” of biodiversity in deep-sea environments. Like tropical coral reefs, these habitats are subject to climate and anthropogenic threats. The use of remotely operated vehicles (ROVSs) in combination with three-dimensional (3D) modelling and augmented reality (AR) has enabled detailed visualisation...

Seabed sedimentary bedforms (SSBs) are strong indicators of current flow (direction and velocity) and can be mapped in high resolution using multibeam echosounders. Many approaches have been designed to automate the classification of such SSBs imaged in multibeam echosounder data. However, these classification systems only apply a geomorphological...

The Celtic Sea, situated off the south coast of Ireland is characterised by a gently southwest-sloping palaeo-glaciated seabed superimposed by a network of Holocene bedforms. During the Last Glacial Maximum (~27 ka BP) the region was occupied by the Irish Sea Ice Stream, which has left an intricate pattern of subglacial meltwater channels and morai...

Cold-water corals (CWCs) have come under threat from anthropogenic activities such as fishing despite their ecological significance as biodiversity hotspots and as such are being protected in Europe under the EU Habitats Directive with some designated as Special Areas of Conservation (SACs). This study maps the distribution and sources of marine li...

The Irish continental margin hosts many complex sedimentary basins, and diverse geomorphological domains displaying bedrock outcrops that can host a large variety of habitats from shallow to cryptic fauna. More recent surveying in the Irish offshore territory has indicated extensive areas of bedrock exposure. The BeTar_Drill2 (Bedrock Target analys...

Monitoring of cold-water corals (CWCs) for pathogens and diseases is limited due to the environment, protected nature of the corals and their habitat and as well as the challenging and sampling effort required. It is recognised that environmental factors such as temperature and pH can expedite the ability of pathogens to cause diseases in cold-wate...

Extensive research has been undertaken to elucidate the glacial history of the British Irish Ice Sheet (BIIS) in the NE Atlantic. BRITICE-CHRONO has compiled terrestrial and marine based evidence, to provide an empirical reconstruction of ice sheet expansion and retreat during the Late Pleistocene. Across the Irish margin, particular focus has been...

National mapping programs (e.g., INFOMAR and MAREANO) and global efforts (Seabed 2030) acquire large volumes of multibeam echosounder data to map large areas of the seafloor. Developing an objective, automated and repeatable approach to extract meaningful information from such vast quantities of data is now essential. Many automated or semi-automat...

Temperature and pH can expedite the ability of pathogens to cause diseases in cold-water corals (CWCs). The present study employed a combination of histology and polymerase chain reaction diagnostic techniques to investigate potential pathogens present in the CWCs Lophelia pertusa and Madrepora oculata in the Porcupine Bank Canyon (PBC), NE Atlanti...

The “Little MonSta” benthic lander array consists of 8 ROV-deployable (remotely operated vehicle) instrumented lander platforms for monitoring physical and chemical oceanographic properties and particle sampling developed as part of the MMMonKey_Pro program (mapping, modeling, and monitoring key processes and controls in cold-water coral habitats i...

Benthic fauna form spatial patterns which are the result of both biotic and abiotic processes, which can be quantified with a range of landscape ecology descriptors. Fine- to medium-scale spatial patterns (<1–10 m) have seldom been quantified in deep-sea habitats, but can provide fundamental ecological insights into species’ niches and interactions...

Cold-water coral (CWC) reefs are complex structural habitats that are considered biodiversity “hotspots” in deep-sea environments and are subject to several climate and anthropogenic threats. As three-dimensional structural habitats, there is a need for robust and accessible technologies to enable more accurate reef assessments. Photogrammetry deri...

In the Porcupine Bank Canyon, Lophelia pertusa and Madrepora oculata are the main framework-forming corals producing three dimensional structures which provide a home for a range of benthic fauna and microbial communities. To understand the roles and functions that microbes perform in coral health in the Porcupine Bank Canyon, three groups of sampl...

Cold-water coral (CWC) habitats are considered important centers of biodiversity in the deep sea, acting as spawning grounds and feeding area for many fish and invertebrates. Given their occurrence in remote parts of the planet, research on CWC habitats has largely been derived from remotely-sensed marine spatial data. However, with ever-developing...

Abstract Strong currents are a key component of benthic habitats by supplying food and nutrients to filter-feeding organisms such as cold-water corals. Although field measurements show that cold-water coral habitats exist in areas of elevated bottom currents, flume studies show that cold-water corals feed more effectively at lower flow speeds. This...

Submarine canyons support high biomass communities as they act as conduits where sediments, nutrients, and organic matter from continental shelves, or those that are carried along by slope currents, are transported into the abyssal zone. The Porcupine Bank Canyon (PBC), located on the Irish continental margin and isolated from terrigenous inputs, r...

High‐resolution seismic and bathymetric data offshore southeast Ireland and LIDaR data in County Waterford are presented that partially overlap previous studies. The observed Quaternary stratigraphic succession offshore southeast Ireland (between Dungarvan and Kilmore Quay) records a sequence of depositional and erosional events that supports regio...

Scleractinian cold-water corals (CWCs), such as Lophelia pertusa and Madrepora oculata, build complex frameworks and carbonate mound habitats in the deep-sea and are regarded as deep-sea biodiversity hotspots. However, there is a paucity of research regarding temporal change in the biological composition of these CWC habitats and analysis of this c...

Cold-water coral (CWC) mounds are biogenic, long-lived morphostructures composed primarily by scleractinian CWC’s and hemipelagic sediments that form complex deep-sea microhabitats found globally but specifically along the European-Atlantic margin. In this work, high-resolution mapping was applied to identify individual organismal distribution and...

Cold-water coral ecosystems represent unique and exceptionally diverse environments in the deep-sea. They are well developed along the Irish margin, varying broadly in shape and size. The Moira Mounds, numerous small-sized mounds, are nestled in the Belgica Mound Province (Porcupine Seabight, North-East Atlantic). The investigation of living (Rose...

Currents play a vital role in sustaining and developing deep water benthic habitats by mobilising food and nutrients to otherwise relatively barren parts of the seabed. Where sediment supply is significant, it can have a major influence on the development and morphology of these habitats. This study examines a segment of the Belgica Mound Province,...

This poster is an introduction to the MMMonKey_Pro programme.

Poster for the International Meeting of Sedimentology, Toulouse, 2017

Cold-water coral (CWC) habitats are commonly regarded as hotspots of biodiversity in the deep-sea. However, a standardised approach to monitoring the effects of climate change, anthropogenic impact and natural variability through video-surveying on these habitats is poorly-established. This study is the first attempt at standardising a cost-effecti...

Original citation Lim, A. 2017. Spatio – temporal patterns and controls on cold-water coral reef development: The Moira Mounds, Porcupine Seabight, offshore Ireland. PhD Thesis, University College Cork. Type of publication Doctoral thesis Rights © 2017, Aaron Lim. http://creativecommons.org/licenses/by-nc-nd/3.0/ Embargo information No embargo requ...

Geological, biological, morphological, and hydrochemical data are presented for the newly discovered Moytirra vent field at 45oN. This is the only high temperature hydrothermal vent known between the Azores and Iceland, in the North Atlantic and is located on a slow to ultraslow-spreading mid-ocean ridge uniquely situated on the 300 m high fault sc...