Question
Asked 4 May 2016
How do I interpret haplotype network from software Network 5.0?
I drew haplotype network so i know h10 in that figure is haplotype 10 but what is mv1 from which h10 is branching out?
Most recent answer
Median vectors (mv) , representing missing or not sampled haplotypes
All Answers (4)
Research Institute of Medical Genetics, Tomsk National Research Medical Center, Russian Academy of Sciences
should be "median vector", as I guess
Simply read user guide:
"A median vector is a hypothesised (often ancestral) sequence which is
required to connect existing sequences within the network with maximum parsimony. Without the median vector, there would be no shortest connection between the data set's sequences."
University of Pune,Indian Institute of Science Education and Research, Pune
Hey thanks Maria. But my point is does it take ancestral sequence (median vector) from the sequences which I have submitted .I am sure it does then how do I know which one it has taken as ancestral sequence.
Research Institute of Medical Genetics, Tomsk National Research Medical Center, Russian Academy of Sciences
I am not an expert in the Network, but as far as I know there is no strict hypothesis about ancestral sequence, unlike you designate it yourself. The program just connects your haplotypes by the shortest way, and you have to decide where is the ancestor. it's not obligatory that the ancestor is the median vector. It could be one of your real haplotypes - most numerous, located deep in the tree, the closest to other species, given rise to many other haplotypes, etc.
Well, I did not work with this software for a long time. Maybe it has gained now the feature of finding the ancestor...