Question
Asked 5 September 2017

How to convert HARDI diffusion data (hdr/img) to nifiti with fslchfiletype for TBSS?

Hi Everyone, I'm really new to Diffusion Imaging and I would like to enquire how do we go about  using fslchfiletype to convert hdr/img to .nii format? Is there a GUI for fslchfiletype?
Would really appreciate some help on this. Thank you!

All Answers (3)

Jonatan Ottino González
Children's Hospital Los Angeles
Germaine,
you may want to check Chris Rorden's tool (http://people.cas.sc.edu/rorden/mricron/dcm2nii.html)
cheers
1 Recommendation
Alex Bhogal
University Medical Center Utrecht
Normally you can open a terminal in the associated directory and then enter command line:
fslchfiletype NIFTI filename.hdr
2 Recommendations
Germaine Chew
Temasek Polytechnic
Dear Jonatan and Alex,
Thank you very much for the references and help!! :)

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