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Asked 8th Feb, 2014

FSL 5.0 GUI working fine but Command line not working - any suggestions?

I have installed FSL 5.0 in my ubuntu 12.10. It's working fine when processed from GUI but when I try to run it using command line, it shows "command not found".
9th Feb, 2014
Irene Bollettini
San Raffaele Scientific Institute
You need to setup the configuration by hand.
User shell setup is stored in a file called .bash_profile (BASH) or .profile (SH, KSH and sometimes BASH) in your home folder (eg ~/.bash_profile), you need to edit (or create) this file to add the following lines:
FSLDIR=/usr/local/fsl
. ${FSLDIR}/etc/fslconf/fsl.sh
PATH=${FSLDIR}/bin:${PATH}
export FSLDIR PATH
changing /usr/local/fsl to the directory path you installed FSL to.
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