Question
Asked 1 July 2019
  • Government Yoga and Naturopathy Medical College & Hospital

Autophagy: After how many days of fasting does autophagy usually start?

Hi,
Could you please help me to explore after how many days of fasting does autophagy actually start in (1) Humans (2) Animal models and/or (3) cell lines, please?
Thank you in advance

Most recent answer

Venugopal Vijayakumar
Government Yoga and Naturopathy Medical College & Hospital
Thanks a lot for your valuable inputs

Popular answers (1)

Suraiya Saleem
Indian Institute of Technology Madras
Hi,
I have worked with the PC12 neuronal cell line in which I studied autophagy. It was observed that upon treatment, in about 24 to 48 hrs there were occurrence of autophagic vacuoles in the cells followed by autophagic death. but at the molecular level autophagic genes began to express as early as 8hrs post insult.
Animal models and humans will definitely have a different time line of events.
All the best.
3 Recommendations

All Answers (5)

Suraiya Saleem
Indian Institute of Technology Madras
Hi,
I have worked with the PC12 neuronal cell line in which I studied autophagy. It was observed that upon treatment, in about 24 to 48 hrs there were occurrence of autophagic vacuoles in the cells followed by autophagic death. but at the molecular level autophagic genes began to express as early as 8hrs post insult.
Animal models and humans will definitely have a different time line of events.
All the best.
3 Recommendations
Venugopal Vijayakumar
Government Yoga and Naturopathy Medical College & Hospital
Suraiya Saleem That’s great...! Thank you so much.
Looking forward to know the experts inputs in humans & animal models...
Rabeah Al-Temaimi
Kuwait University
I worked on primary dog dorsal root ganglia and fibroblast cultures. We assessed Mitophagy and autophagy after 20 and 24 hours in starvation media with organelle specific dyes and we noted mitophagy but not autophagy. So I guess you would need either specific early autophagy marker and test for it in fixed cells after different interval incubation to ascertain the start of autophagy. I would think it would be cell type dependent too. Alternatively if you want to keep cell alive for live-cell imaging I suggest you use lysotracker dye to visualize autophagic vacuoles in real-time.
2 Recommendations
Nilay Nandi
University of Texas Southwestern Medical Center
Venugopal Vijayakumar In Drosophila melanogaster starvation independent basal autophagy can be visualised in larval fat bodies 90-96 h after egg laying. To examine starvation dependent autophagy, 90-92 h old larvae is further starved in 20% sucrose solution for 4 h and starvation dependent autophagy is analysed in larval fat body.
1 Recommendation
Venugopal Vijayakumar
Government Yoga and Naturopathy Medical College & Hospital
Thanks a lot for your valuable inputs

Similar questions and discussions

What about complete() function of the mice package in R?
Question
2 answers
  • Florent MichelotFlorent Michelot
Hi everyone,
I would like your opinion on using the complete() function of the mice package on R.
Theoretically, after multiple imputations, analyses should be performed on each imputed dataset, and then the results of the analyses should be pooled (see attached diagram).
However, I consider the complete() function. In summary, it permits generating a unique final dataset using the results of multiple imputations previously performed with the mice() function. This strategy is easy, "inexpensive," and allows us to manipulate only one dataset.
This is a concrete example of the usefulness of this strategy. I am conducting mixed-methods research in which I want to interview some participants after analyzing their responses to my survey. If my respondent John Doe did not answer to an item of a scale, I would risk having 5 plausible answers from John Doe after multiple imputations (if m=5, or 20 plausible responses if m=20, etc.). However, the complete() function will summarize the different estimates into one dataset (instead of 5, or 20, etc.). Basically, during an interview, I will be able to question John Doe based on his scale score computed with NA replacement. So I lose precision, but gain in ability to exploit the answers.
However, this approach seems problematic, as the literature does not support it well. In fact, except for this paper by van Buuren et al. (2011, cf. section 5.2), I cannot find any source that supports this approach:
Well, I'm stuck between a rock (a more rigorous approach, i.e. the pooling) and a hard place (a more practical approach, i.e. the complete() function). What do you think?
Hope to read you (and my apologies for my broken English)
FM

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