Lab
Molecular Bases of Disease and Drug Design (MolBD3)
Institution: Italian National Research Council
Department: Institute of Biophysics IBF
About the lab
https://users.unimi.it/biolstru/molbd3-lab.html
https://www.instagram.com/molbd3/
Hosted by the Institute of Biophysics, our group aims to dissect the molecular basis of human diseases. We exploit an integrated approach, blending structural biology techniques (such as X-ray crystallography, small angle X-ray scattering and cryo electron microscopy) with protein biochemistry/biophysics and computational biology).
Once the underlying pathological mechanism is well described, the same structural and biochemical tools are employed to screen and design novel drugs.
We are involved in several collaborative projects both with academic groups and pharmaceutical companies.
https://www.instagram.com/molbd3/
Hosted by the Institute of Biophysics, our group aims to dissect the molecular basis of human diseases. We exploit an integrated approach, blending structural biology techniques (such as X-ray crystallography, small angle X-ray scattering and cryo electron microscopy) with protein biochemistry/biophysics and computational biology).
Once the underlying pathological mechanism is well described, the same structural and biochemical tools are employed to screen and design novel drugs.
We are involved in several collaborative projects both with academic groups and pharmaceutical companies.
Featured research (4)
Pyridobenzothiazolone derivatives are a promising class of broad-spectrum antivirals. However, the mode of action of these compounds remains poorly understood. The HeE1-17Y derivative has already been shown to be a potent compound against a variety of flaviviruses of global relevance. In this work, the mode of action of HeE1-17Y has been studied for West Nile virus taking advantage of reporter replication particles (RRPs). Viral infectivity was drastically reduced by incubating the compound with the virus before infection, thus suggesting a direct interaction with the viral particles. Indeed, RRPs incubated with the inhibitor appeared to be severely compromised in electron microscopy analysis. HeE1-17Y is active against other enveloped viruses, including SARS-CoV-2, but not against two non-enveloped viruses, suggesting a virucidal mechanism that involves the alteration of the viral membrane.
Gelsolin comprises six homologous domains, named G1 to G6. Single point substitutions in this protein are responsible for AGel amyloidosis, a hereditary disease causing progressive corneal lattice dystrophy, cutis laxa, and polyneuropathy. Although several different amyloidogenic variants of gelsolin have been identified, only the most common mutants present in the G2 domain have been thoroughly characterized, leading to clarification of the functional mechanism. The molecular events underlying the pathological aggregation of 3 recently identified mutations, namely A551P, E553K and M517R, all localized at the interface between G4 and G5, are here explored for the first time. . Structural studies point to destabilization of the interface between G4 and G5 due to three structural determinants: β-strand breaking, steric hindrance and/or charge repulsion, all implying impairment of interdomain contacts. Such rearrangements decrease the temperature and pressure stability of gelsolin but do not alter its susceptibility to furin cleavage, the first event in the canonical aggregation pathway. These variants also have a greater tendency to aggregate in the unproteolysed forms and exhibit higher proteotoxicity in a C. elegans-based assay. Our data suggest that aggregation of G4G5 variants follows an alternative, likely proteolysis-independent, pathway.
Inhibitors of apoptosis proteins (IAPs) are validated onco-targets, as their overexpression correlates with cancer onset, progression, diffusion and chemoresistance. IAPs regulate cell death survival pathways, inflammation, and immunity. Targeting IAPs, by impairing their protein-protein interaction surfaces, can affect events occurring at different stages of cancer development.
To this purpose, we employed a rational virtual screening approach to identify compounds predicted to interfere with the assembly of pro-survival macromolecular complexes. One of the candidates, FC2, was shown to bind in vitro the BIR1 domains of both XIAP and cIAP2. Moreover, we demonstrated that FC2 can induce cancer cell death as a single agent and, more potently, in combination with the Smac-mimetic SM83 or with the cytokine TNF. FC2 determined a prolonged activation of the NF-κB pathway, accompanied to a stabilization of XIAP-TAB1 complex. This candidate molecule represents a valuable lead compound for the development of a new class of IAP-antagonists for cancer treatment.
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