Global Ecology and Biogeography

Published by Wiley
Publications
Understanding the stability of realized niches is crucial for predicting the responses of species to climate change. One approach is to evaluate the niche differences of populations of the same species that occupy regions that are geographically disconnected. Here, we assess niche conservatism along thermal gradients for 26 plant species with a disjunct distribution between the Alps and the Arctic. European Alps and Norwegian Finnmark. We collected a comprehensive dataset of 26 arctic-alpine plant occurrences in two regions. We assessed niche conservatism through a multispecies comparison and analysed species rankings at cold and warm thermal limits along two distinct gradients corresponding to (1) air temperatures at 2 m above ground level and (2) elevation distances to the tree line (TLD) for the two regions. We assessed whether observed relationships were close to those predicted under thermal limit conservatism. We found a weak similarity in species ranking at the warm thermal limits. The range of warm thermal limits for the 26 species was much larger in the Alps than in Finnmark. We found a stronger similarity in species ranking and correspondence at the cold thermal limit along the gradients of 2-m temperature and TLD. Yet along the 2-m temperature gradient the cold thermal limits of species in the Alps were lower on average than those in Finnmark. We found low conservatism of the warm thermal limits but a stronger conservatism of the cold thermal limits. We suggest that biotic interactions at the warm thermal limit are likely to modulate species responses more strongly than at the cold limit. The differing biotic context between the two regions is probably responsible for the observed differences in realized niches.
 
Boxplots of Pagel's lambda and kappa as measures of phylogenetic signal and gradualism, respectively, estimated for all ordination axes of ecological variation relevant to climatic, habitat and trophic niches. Replicate estimates of lambda and kappa for each axis were made using 100 nearly maximum likelihood phylogenetic trees. The values at the top of each box give the percentage of tests (across trees and axis combinations) that yielded lambda or kappa estimates that were significantly greater than 0 and lower than 1, respectively, based on likelihood ratio tests. To account for the importance of each ordination axis, lambda and kappa values were weighted according to the variances (eigenvalues) of the corresponding ordination axis. The box waist indicates the median score. Filled black points indicate the weighted average estimates of lambda and kappa for climatic, habitat and trophic multivariate niches, across trees and axes.
Plots of observed disparity through time (DTT) for observed data and results from Brownian evolution models for three components of the environmental niches of 405 species of European birds. The span of solid colors in the vertical direction indicates the range of disparity values that arises from topological uncertainty across 100 nearly maximum likelihood phylogenetic trees. Values of disparity for all three niches (saturated colours) differ from neutral expectations derived from 1000 Brownian evolution simulations of each niche (pale colours).
The origins of ecological diversity in continental species assemblages have long intrigued biogeographers. We apply phylogenetic comparative analyses to disentangle the evolutionary patterns of ecological niches in an assemblage of European birds. We compare phylogenetic patterns in trophic, habitat and climatic niche components. Europe. From polygon range maps and handbook data we inferred the realized climatic, habitat and trophic niches of 405 species of breeding birds in Europe. We fitted Pagel's lambda and kappa statistics, and conducted analyses of disparity through time to compare temporal patterns of ecological diversification on all niche axes together. All observed patterns were compared with expectations based on neutral (Brownian) models of niche divergence. In this assemblage, patterns of phylogenetic signal (lambda) suggest that related species resemble each other less in regard to their climatic and habitat niches than they do in their trophic niche. Kappa estimates show that ecological divergence does not gradually increase with divergence time, and that this punctualism is stronger in climatic niches than in habitat and trophic niches. Observed niche disparity markedly exceeds levels expected from a Brownian model of ecological diversification, thus providing no evidence for past phylogenetic niche conservatism in these multivariate niches. Levels of multivariate disparity are greatest for the climatic niche, followed by disparity of the habitat and the trophic niches. Phylogenetic patterns in the three niche components differ within this avian assemblage. Variation in evolutionary rates (degree of gradualism, constancy through the tree) and/or non-random macroecological sampling probably lead here to differences in the phylogenetic structure of niche components. Testing hypotheses on the origin of these patterns requires more complete phylogenetic trees of the birds, and extended ecological data on different niche components for all bird species.
 
Description of anthrome classes.
Global changes in anthromes, 1700–2000, relative to global population (a) and land use (b–h). Global percentages for each time period are at the top, absolute values at the bottom (scales differ for each variable, as marked), for global population (a), all ice-free land (b), unused lands (c; lands not in use for agriculture or urban settlements), used lands (d; crops + pasture + urban), pasture land (e), cropped land (f), irrigated land (g) and urban land (h).
Potential natural vegetation biomes (a; Ramankutty & Foley, 1999) and their anthropogenic transformation from 1700 to 2000 (b–d). Levels of anthrome transformation of the terrestrial biosphere in 2000 (b) and in 1700 (c) are illustrated, along with the year 2000 anthrome levels of 1700s-era wildlands (d) and seminatural anthromes (e). White spaces in (d) and (e) are non-wild and non-seminatural areas, respectively, in 1700. Eckert IV projection.
Global patterns of anthropogenic transformation and novel ecosystem development, 1700–2000. Anthropogenic land transformations are highlighted using an index of transformation calculated by subtracting anthrome classes between time periods (legend at upper right), for all change up to 1700 (a), between 1700 and 1800 (b), 1800 and 1900 (c), 1900 and 2000 (d), 1700 and 2000 (e) and for all change up to 2000 (f). Time since conversion to anthromes (g), percentage of anthrome area consisting of embedded unused lands (h; lands not used for agriculture or settlements, not including wildlands), and the anthrome level of all cells with > 20% cover by unused lands with at least 300 years elapsed since their conversion from wild biomes (i). Eckert IV projection.
Aim To map and characterize anthropogenic transformation of the terrestrial biosphere before and during the Industrial Revolution, from 1700 to 2000.Location Global.Methods Anthropogenic biomes (anthromes) were mapped for 1700, 1800, 1900 and 2000 using a rule-based anthrome classification model applied to gridded global data for human population density and land use. Anthropogenic transformation of terrestrial biomes was then characterized by map comparisons at century intervals.Results In 1700, nearly half of the terrestrial biosphere was wild, without human settlements or substantial land use. Most of the remainder was in a seminatural state (45%) having only minor use for agriculture and settlements. By 2000, the opposite was true, with the majority of the biosphere in agricultural and settled anthromes, less than 20% seminatural and only a quarter left wild. Anthropogenic transformation of the biosphere during the Industrial Revolution resulted about equally from land-use expansion into wildlands and intensification of land use within seminatural anthromes. Transformation pathways differed strongly between biomes and regions, with some remaining mostly wild but with the majority almost completely transformed into rangelands, croplands and villages. In the process of transforming almost 39% of earth's total ice-free surface into agricultural land and settlements, an additional 37% of global land without such use has become embedded within agricultural and settled anthromes.Main conclusions Between 1700 and 2000, the terrestrial biosphere made the critical transition from mostly wild to mostly anthropogenic, passing the 50% mark early in the 20th century. At present, and ever more in the future, the form and process of terrestrial ecosystems in most biomes will be predominantly anthropogenic, the product of land use and other direct human interactions with ecosystems. Ecological research and conservation efforts in all but a few biomes would benefit from a primary focus on the novel remnant, recovering and managed ecosystems embedded within used lands.
 
Maps of location of (a) richness hotspots, (b) threatspots and endemic hotspots, (c) rarity hotspots and (d) taxonomic hotspots of plant diversity of Crete, according to the division of the island into 162 grid cells of 8.25 km2. Asterisks indicate Natura 2000 SACs.
Maps of distribution of grid cells chosen to represent (a) all the plant species, (b) all the endemic plant species, (c) all the genera and (d) all the families at least once, according to the division of the Crete into 162 grid cells of 8.25 km2. Natura 2000 SACs are indicated with asterisks.
Spearman rank correlation coefficients among scores for species richness, vulnerability, range-size rarity, endemic species richness and taxonomic distinctiveness in the 162 studied cells in Crete
Aim This study examines the effectiveness of the selected ‘network’ of Natura 2000 Special Areas of Conservation (SACs) at a regional scale in Greece, in terms of its representativeness of plant biodiversity. Location The island of Crete is used as a case study because it is considered to be one of the 10 hotspots for biodiversity in the Mediterranean Basin. Methods Hotspot analysis and complementarity algorithms are used to define priority areas for conservation and calculate their spatial overlap with the Natura 2000 SACs in Crete. Results The various categories of hotspots contain subsamples of plant categories, used for their definition. Spatial overlap among different categories of hotspots, areas of complementary diversity and Natura 2000 SCAs is low. Main conclusions The results show that the Natura 2000 SACs ‘network’ in Crete seems insufficient to ensure satisfactory representation of the regional plant biodiversity elements.
 
Aims Twentieth-century climate, the spatial pattern of tree establishment and positive feedback influence upper tree line ecotones. Here, I investigate how these factors interact to gain a more holistic understanding of how broad-scale abiotic and local-scale site conditions regulate tree establishment within upper tree line ecotones. Location A latitudinal gradient (c. 35–45° N) in the US Rocky Mountains. Study sites (n= 22) were located in the Bighorn (BH), Medicine Bow (MB), Front Range (FR) and Sangre de Cristo (SDC) mountain ranges. Methods Dendroecological techniques were used to reconstruct tree establishment dates that were compared with 20th-century climate data using correlation and regime shift analyses. Spatial patterns of tree establishment were analysed by Ripley's K and used to determine local-scale interactions capable of ameliorating broad-scale climate inputs through positive feedback. Results Significant correlations (P < 0.01) between tree establishment and climate were confined to the FR, where a positive correlation was found with summer (June–August) and cool season (November–April) temperature range (Tmax−Tmin). These trees were almost exclusively situated in a random spatial pattern. Similar patterns exist in the BH, yet their establishment was contingent on the availability of local shelter in the lee of boulders. Trees in the MB and SDC were primarily clustered in space and had no significant correlations with climate. Considerable lag times exist between regime shift changes in climate towards more favourable growing conditions and corresponding shifts in tree establishment in all mountain ranges except the FR, where synchronous shifts occurred in the early 1950s. Main conclusions These results suggest that the influence of broad-scale climate on upper tree line dynamics is contingent on the local-scale spatial patterns of tree establishment and related influences of positive feedback. This research has important implications for understanding how vegetation communities will respond to global climate change.
 
Aim To provide the first comparative overview on the current numbers of alien species that invade representative European terrestrial and freshwater habitats for a range of taxonomic groups.Location Europe.Methods Numbers of naturalized alien species of plants, insects, herptiles, birds and mammals occurring in 10 habitats defined according to the European Nature Information System (EUNIS) were obtained from 115 regional data sets. Only species introduced after ad 1500 were considered. Data were analysed by ANCOVA and regression trees to assess whether differences exist among taxonomic groups in terms of their habitat affinity, and whether the pattern of occurrence of alien species in European habitats interacts with macroecological factors such as insularity, latitude or area.Results The highest numbers of alien plant and insect species were found in human-made, urban or cultivated habitats; if controlled for habitat area in the region, wetland and riparian habitats appeared to support relatively high numbers of alien plant species too. Invasions by vertebrates were more evenly distributed among habitats, with aquatic and riparian, woodland and cultivated land most invaded. Mires, bogs and fens, grassland, heathland and scrub were generally less invaded. Habitat and taxonomic group explained most variation in the proportions of alien species occurring in individual habitats related to the total number of alien species in a region, and the basic pattern determined by these factors was fine-tuned by geographical variables, namely by the mainland–island contrast and latitude, and differed among taxonomic groups.Main conclusions There are two ecologically distinct groups of alien species (plants and insects versus vertebrates) with strikingly different habitat affinities. Invasions by these two contrasting groups are complementary in terms of habitat use, which makes an overall assessment of habitat invasions in Europe possible. Since numbers of naturalized species in habitats are correlated among taxa within these two groups, the data collected for one group of vertebrates, for example, could be used to estimate the habitat-specific numbers of alien species for other vertebrate groups with reasonable precision, and the same holds true for insects and plants.
 
Aim Recent studies of plant invasions in habitat types across different climatic regions of Europe have made it possible to produce a European map of plant invasions. Parallel research led to the formulation of integrated scenarios of future socio-economic development, which were used to create spatially explicit scenarios of European land-use change for the 21st century. Here we integrate these two research lines and produce the first spatially explicit projections of plant invasions in Europe for the years 2020, 2050 and 2080. Location The European Union (except Bulgaria and Romania), Norway and Switzerland. Methods We used vegetation plots from southern, central and north-western Europe to quantify mean levels of invasion by neophytes (post-1500 alien plants) for forest, grassland, urban, arable and abandoned land. We projected these values on the land-use scenarios for 2020, 2050 and 2080, and constructed maps of future plant invasions under three socio-economic scenarios assuming: (1) deregulation and globalization, (2) continuation of current policies with standing regulations, and (3) a shift towards sustainable development. Results Under all scenarios an increase in the level of invasion was projected for north-western and northern Europe, and under the first two scenarios a decrease for some agricultural areas of eastern Europe where abandonment of agricultural land is expected. A net increase in the level of invasion over Europe was projected under scenarios 2 and 3. Main conclusions The polarization between more and less invaded regions is likely to increase if future policies are oriented on economic deregulation, which may result in serious future problems in some areas of Europe. However, an implementation of sustainability policies would not automatically restrict the spread of alien plants. Therefore invasions require specific policy approaches beyond the more general ones, which are currently on the policy agenda and were tested in the scenarios.
 
1. Three permanent plots (100×0 m) were established in the subalpine Norway spruce (Picea abies (L.) Karst.) forest of Paneveggio in the spring of 1993, to begin a long-term forest ecosystem research project. The main purpose of these plots was to provide information about subalpine Norway spruce stand dynamics and to provide suggestions for close-to-nature silviculture. 2. The three stands were selected to represent the most common forest structures in the Paneveggio forest. The first stand is close to forestry roads, has a relatively regular and continuous canopy, and thinning and cutting operations only ended in the 1980s; the second stand is far from forest roads and has developed without anthropogenic influence for several decades; the third one is located at the present upper limit of the pure spruce forest and, apparently, was heavily used in the past as a pasture. 3. The first step in the investigation was to describe the structure and to study the history of the three stands using both written evidence from manage- ment plans and biological archives from tree rings. 4. The stands in plots 1 and 2 began to establish after a disturbance that removed part of the previous stands according to dendroecological studies, which are partially supported by written evidence. The remaining parts of these stands were eliminated by two major disturbances that occurred during the following decades. Written records about the use of the forest lead us to assume that the initial disturbances that occurred in the two stands were logging activities as a part of a group shelterwood system. The stand in plot 2 has developed without significant human interference for about half a century as confirmed by the presence of many dead trees. The stand in plot 3 consists of old trees that were part of an open stand and a secondary population that established after cessation of grazing. 5. The study has confirmed that dendroecological techniques can be used to identify occurrence and intensity of previous disturbance in forests stands, although at Paneveggio it is difficult to distinguish between natural and anthropogenic disturbances in the tree ring record. The presence of human activity necessitates investigation of multiple lines of evidence. 6. Paneveggio's forest management plans were useful in the interpretation of the data obtained through dendroecological analysis, although events did not always correspond because data from the management plans (yearly thinning, felling, wind-throw damage) never gave stand-level details, but applied to areas of several hectares. Despite these limitations, the information included in the management plans is of crucial importance in studying stand history and only by using all these sources of information is it possible to delineate the most important features of the history and disturbance that affected the origin and subsequent growth of the forest stands.
 
Range–diversity plots for the mammal fauna of three regions in Mexico, by species (a, c, e), and by sites (b, d, f): (a, b) central Mexico; (c, d) the Isthmus of Tehuantepec; (e, f) the Yucatan Peninsula. By species, showing their proportional range sizes (ordinates) and the average species richness within their ranges (abscissas); histograms on top and on the right-hand side show the frequency distribution of those variables; the solid curved line marks the upper theoretical limit for points; the vertical dashed line corresponds to the mean proportional species richness of the sites and the hyperbolic dashed curves are lines of equal covariance among species. By sites, showing their proportional species richness (ordinates) and the average proportional range size of species occurring in the sites with the other elements of the graph correspond to those described for species.
Aim A great deal of information on distribution and diversity can be extracted from presence–absence matrices (PAMs), the basic analytical tool of many biogeographic studies. This paper presents numerical procedures that allow the analysis of such information by taking advantage of mathematical relationships within PAMs. In particular, we show how range–diversity (RD) plots summarize much of the information contained in the matrices by the simultaneous depiction of data on distribution and diversity.Innovation We use matrix algebra to extract and process data from PAMs. Information on the distribution of species and on species richness of sites is computed using the traditional R (by rows) and Q (by columns) procedures, as well as the new Rq (by rows, considering the structure of columns) and Qr (by columns, considering the structure by rows) methods. Matrix notation is particularly suitable for summarizing complex calculations using PAMs, and the associated algebra allows the implementation of efficient computational programs. We show how information on distribution and species richness can be depicted simultaneously in RD plots, allowing a direct examination of the relationship between those two aspects of diversity. We explore the properties of RD plots with a simple example, and use null models to show that while parameters of central tendency are not affected by randomization, the dispersion of points in RD plots does change, showing the significance of patterns of co-occurrence of species and of similarity among sites.Main conclusion Species richness and range size are both valid measures of diversity that can be analysed simultaneously with RD plots. A full analysis of a system requires measures of central tendency and dispersion for both distribution and species richness.
 
Aim Explanations of biogeographic diversity patterns have emphasized the role of large-scale processes that determine species pools, whereas explanations of local patterns have not. We address the hypothesis that local diversity patterns are also primarily dependent on the size of the available species pools, which are expected to be large when the particular habitat type has been evolutionary more abundant, or in unproductive habitats due to shorter generation time and hence higher diversification rates. Location The Canary Islands. Methods We determined the geographic distribution and habitat requirements of all native vascular plant species in the Canary Islands. Species pools for each habitat type on particular islands were further split into two categories according to origin: either originating due to local diversification or due to natural immigration. The dependence of historical diversification and diversification rate on habitat type, area, age, altitude and distance to the mainland was tested with general linear mixed models weighed according to the Akaike information criterion. Results The largest portion of the local variation in plant species diversity was attributed to the historic (pre-human) habitat area, although island age was also important. The diversification rate was higher in unproductive habitats of coastal scrub and summit vegetation. Main conclusion Our study supports the species pool hypothesis, demonstrating that natural local patterns of species diversity in different habitats mirror the abundance of those particular habitats in evolutionary history. It also supports the community-level birth rate hypothesis, claiming that stressful conditions result in higher diversification rates. We conclude that much of the observed local variation in plant diversity can be attributed to the differing sizes of species pools evolved under particular habitat conditions, and that historic parameters are far more important determinants of local diversity than suggested by ecological theory.
 
Aim To integrate dietary knowledge and species distributions in order to examine the latitudinal, environmental, and biogeographical variation in the species richness of avian dietary guilds (herbivores, granivores, frugivores, nectarivores, aerial insectivores, terrestrial/arboreal insectivores, carnivores, scavengers, and omnivores). Location Global. Methods We used global breeding range maps and a comprehensive dietary database of all terrestrial bird species to calculate guild species richness for grid cells at 110 × 110 km resolution. We assessed congruence of guild species richness, quantified the steepness of latitudinal gradients and examined the covariation between species richness and climate, topography, habitat diversity and biogeographic history. We evaluated the potential of current environment and biogeographic history to explain global guild distribution and compare observed richness–environment relationships with those derived from random subsets of the global species pool. Results While most guilds (except herbivores and scavengers) showed strong congruence with overall bird richness, covariation in richness between guilds varied markedly. Guilds exhibited different peaks in species richness in geographical and multivariate environmental space, and observed richness–environment relationships mostly differed from random expectations. Latitudinal gradients in species richness were steepest for terrestrial/arboreal insectivores, intermediate for frugivores, granivores and carnivores, and shallower for all other guilds. Actual evapotranspiration emerged as the strongest climatic predictor for frugivores and insectivores, seasonality for nectarivores, and temperature for herbivores and scavengers (with opposite direction of temperature effect). Differences in species richness between biogeographic regions were strongest for frugivores and nectarivores and were evident for nectarivores, omnivores and scavengers when present-day environment was statistically controlled for. Guild richness–environment relationships also varied between regions. Main conclusions Global associations of bird species richness with environmental and biogeographic variables show pronounced differences between guilds. Geographic patterns of bird diversity might thus result from several processes including evolutionary innovations in dietary preferences and environmental constraints on the distribution and diversification of food resources.
 
Aim To assess the influence of natural environmental factors and historic and current anthropogenic processes as determinants of vegetation distributions at a continental scale. Location Africa. Methods Boosted regression trees (BRTs) were used to model the distribution of African vegetation types, represented by remote-sensing-based land-cover (LC) types, as a function of environmental factors. The contribution of each predictor variable to the best models and the accuracy of all models were assessed. Subsequently, to test for anthropogenic vegetation transformation, the relationship between the number of BRT false presences per grid cell and human impact was evaluated using hurdle models. Finally, the relative contributions of environmental, current and historic anthropogenic factors on vegetation distribution were assessed using regression-based variation partitioning. Results Deserts and evergreen forests were best predicted by environmental variables, though most other LC classes were also relatively well predicted by the environment. Annual precipitation emerged as the most important determinant of all LC classes. At low rainfall levels, LC classes with increasing woody cover replaced each other as rainfall increased, while LC class rainfall optima overlapped at high rainfall levels. With some exceptions, anthropogenic factors had a relatively small influence on the distribution of most LC classes. However, anthropogenic factors did have an influence on the inaccuracies in BRT models, and these models provided an indication of which LC classes have been most reduced by transformation. Main conclusions Here we show, for the first time, how environmental and anthropogenic factors influence vegetation distribution across Africa. LC classes at rainfall extremes are best predicted by the environment. In addition, we corroborate, also for the first time, the much-stated claim that rainfall is the most important variable for the distribution of African vegetation for all African vegetation types. Finally, we indicate how anthropogenic drivers affect LC distributions.
 
Aim In any region affected, fires exhibit a strong seasonal cycle driven by the dynamic of fuel moisture and ignition sources throughout the year. In this paper we investigate the global patterns of fire seasonality, which we relate to climatic, anthropogenic, land-cover and land-use variables. Location Global, with detailed analyses from single 1°× 1° grid cells. Methods We use a fire risk index, the Chandler burning index (CBI), as an indicator of the ‘natural’, eco-climatic fire seasonality, across all types of ecosystems. A simple metric, the middle of the fire season, is computed from both gridded CBI data and satellite-derived fire detections. We then interpret the difference between the eco-climatic and observed metrics as an indicator of the human footprint on fire seasonality. Results Deforestation, shifting cultivation, cropland production or tropical savanna fires are associated with specific timings due to land-use practices, sometimes largely decoupled from the CBI dynamics. Detailed time series from relevant locations provide comprehensive information about these practices and how they are adapted to eco-climatic conditions. Main conclusions We find a great influence of anthropogenic activities on global patterns of fire seasonality. The specificity of the main fire practices and their easy identification from global observation is a potential tool to support land-use monitoring efforts. Our results should also prove valuable in the development of a methodological approach for improving the representation of anthropogenic fire practices in dynamic global vegetation models.
 
Aim We examine how two categories of non-native species (archaeophyte and neophyte, introduced before and after ad 1500, respectively) have had different impacts on β diversity across European urban floras. Our goal is to use the unique biological perspective provided by urban areas, and the contrasting historical and geographical perspectives provided by archaeophytes and neophytes, to infer how non-native species will impact upon β diversity in the future.Location Twenty-two urban areas located in seven European countries.Methods We used the β-sim dissimilarity index to estimate the level of β diversity for 231 unique pair-wise combinations of 22 urban floras. We examined bivariate plots of dissimilarity by geographical separation of city centres to evaluate distance decay of similarity for native species, archaeophytes and neophytes.Results Based on average percentages, 52.8% (SD = 8.2%) of species in the urban floras were identified as non-native with 28.3% (SD = 6.9%) classified as neophytes and 24.5% (SD = 4.9%) as archaeophytes. Relative to native species, across urban floras, archaeophytes were associated with higher compositional similarity and weaker distance decay patterns, whereas neophytes were associated with lower compositional similarity and stronger distance decay patterns.Main conclusions Across European urban floras, archaeophytes and neophytes occurred in similar numbers but archaeophytes were consistently associated with lower β diversity and neophytes with higher β diversity. Thus, the impact of non-native species on β diversity can be determined, at least in part, through their historical and geographical associations with anthropogenic activities. If archaeophytes represent the long-term biogeographical outcome for human commensal species, neophytes could develop similar patterns. The consequences, however, are likely to be more substantial ecologically and geographically due to the increasing numbers of neophytes and their global anthropogenic associations. Nevertheless, at present, our findings suggest that, based on occurrence information, neophytes have not achieved this state with European urban floras retaining regionally distinct assemblages of neophytes.
 
Aim To investigate how species richness and similarity of non-native plants varies along gradients of elevation and human disturbance. Location Eight mountain regions on four continents and two oceanic islands. Methods We compared the distribution of non-native plant species along roads in eight mountainous regions. Within each region, abundance of plant species was recorded at 41–84 sites along elevational gradients using 100-m2 plots located 0, 25 and 75 m from roadsides. We used mixed-effects models to examine how local variation in species richness and similarity were affected by processes at three scales: among regions (global), along elevational gradients (regional) and with distance from the road (local). We used model selection and information criteria to choose best-fit models of species richness along elevational gradients. We performed a hierarchical clustering of similarity to investigate human-related factors and environmental filtering as potential drivers at the global scale. Results Species richness and similarity of non-native plant species along elevational gradients were strongly influenced by factors operating at scales ranging from 100 m to 1000s of km. Non-native species richness was highest in the New World regions, reflecting the effects of colonization from Europe. Similarity among regions was low and due mainly to certain Eurasian species, mostly native to temperate Europe, occurring in all New World regions. Elevation and distance from the road explained little of the variation in similarity. The elevational distribution of non-native species richness varied, but was always greatest in the lower third of the range. In all regions, non-native species richness declined away from roadsides. In three regions, this decline was steeper at higher elevations, and there was an interaction between distance and elevation. Main conclusions Because non-native plant species are affected by processes operating at global, regional and local scales, a multi-scale perspective is needed to understand their patterns of distribution. The processes involved include global dispersal, filtering along elevational gradients and differential establishment with distance from roadsides.
 
Aim To assess how habitat affinities in the native distribution range influence the invasion success of 282 central European neophytes (alien plants introduced after ad 1500). Location Czech Republic. Methods Classification trees were used to determine which native habitats donate the most alien species, the correspondence between habitats occupied by species in their native and invaded distribution ranges, and invasion success of species originating from different habitats. Results The species most likely to naturalize in Central Europe are those associated with thermophile woodland fringes in their native range (81%), cultivated areas of gardens and parks (75%) and broad-leaved deciduous woodlands (72%). The largest proportions of invasive species recruit from those that occur on riverine terraces and eroded slopes, or grow in both deciduous woodland and riverine scrub. When the relative role of habitats in the native range is assessed as a determinant of the probability that a species will become invasive in concert with other factors (the species’ residence time, life history, region of origin), the direct effect of habitat is negligible. However, the effect of native habitats on patterns of invasions observed in central Europe is manifested by large differences in the numbers of species they supply to the invaded region. More than 50 neophytes were recruited from each of the following habitats: dry grasslands, ruderal habitats, deciduous woodland, inland cliffs, rock pavements and outcrops, and tall-herb fringes and meadows. Main conclusions Casual species recruit from a wider range of habitats in their native range than they occupy in the invaded range; naturalized but not invasive species inhabit a comparable spectrum of habitats in both ranges, and successful invaders occupy a wider range of habitats in the invaded than in the native range. This supports the idea that the invasive phase of the process is associated with changes in biological features that allow for extension of the spectrum of habitats invaded.
 
Aim Human activities have weakened biogeographical barriers to dispersal, increasing the rate of introduction of alien plants. However, their impact on beta diversity and floristic homogenization is poorly understood. Our goal is to compare the phylogenetic beta diversity of native species with that of two groups of alien species, archaeophytes and neophytes (introduced before and after ad 1500, respectively), across European urban floras to explore how biological invasions affect phylogenetic turnover at a continental scale. Location Twenty European cities located in six countries between 49 and 53° N latitude in continental Europe and the British Isles. Methods To compare the phylogenetic beta diversity of native and alien species we use the average phylogenetic dissimilarity of individual floras from their group centroid in multivariate space. Differences in phylogenetic beta diversity among different species groups are then assessed using a randomization test for homogeneity of multivariate dispersions. Results Across European urban floras, and when contrasted with natives, archaeophytes are usually associated with lower levels of phylogenetic beta diversity while neophytes tend to increase phylogenetic differentiation. Main conclusions While archaeophytes tend to promote limited homogenization in phylogenetic beta diversity, because of their diverse geographical origin together with short residence times in the invaded regions, neophytes are not promoting biotic homogenization of urban floras across Europe. Therefore, in spite of the increasing rate of alien invasion, an intense phylogenetic homogenization of urban cities is not to be expected soon.
 
Aim The aim of our study was to reveal relationships between richness patterns of native vs. alien plant species and spatial heterogeneity across varying landscape patterns at a regional scale. Location The study was carried out in the administrative district of Dessau (Germany), covering around 4000 km2. Methods Data on plant distribution of the German vascular flora available in grid cells covering 5′ longitude and 3′ latitude (c. 32 km2) were divided into three status groups: native plants, archaeophytes (pre 1500 AD aliens) and neophytes (post 1500 AD aliens). Land use and abiotic data layers were intersected with 125 grid cells comprising the selected area. Using novel landscape ecological methods, we calculated 38 indices of landscape composition and configuration for each grid cell. Principal components analysis (PCA) with a set of 29 selected, low correlated landscape indices was followed by multiple linear regression analysis. Results PCA reduced 29 indices to eight principal components (PCs) that explained 80% cumulative variance. Multiple linear regression analysis was highly significant and explained 41% to 60% variance in plant species distribution (adjusted R2) with three significant PCs (tested for spatial autocorrelation) expressing moderate to high disturbance levels and high spatial heterogeneity. Comparing the significance of the PCs for the species groups, native plant species richness is most strongly associated with riverine ecosystems, followed by urban ecosystems, and then small-scale rural ecosystems. Archaeophyte and neophyte richness are most strongly associated with urban ecosystems, followed by small-scale rural ecosystems and riverine ecosystems for archaeophytes, and riverine ecosystems and small-scale rural ecosystems for neophytes. Main conclusions Our overall results suggest that species richness of native and alien plants increases with moderate levels of natural and/or anthropogenic disturbances, coupled with high levels of habitat and structural heterogeneity in urban, riverine, and small-scale rural ecosystems. Despite differences in the order of relevance of PCs for the three plant groups, we conclude that at the regional scale species richness patterns of native plants as well as alien plants are promoted by similar factors.
 
The ability to ascribe native or alien status to species in a rapidly changing world underpins diverse research fields that overlap with global change and biological invasions via biodiversity. Current definitions generally link alien status to anthropogenic dispersal events, but this can create conflicts for active management and global change adaptation strategies, such as managed relocation and restoration ecology. Here we propose a unifying approach that allows for the incorporation of rapid global change into biological invasion terminology. We introduce the concept of a projected dispersal envelope (PDE) to define the region where a species is or could be native, irrespective of human involvement. The PDE integrates biogeography and niche theory with existing invasion terminology to place a spatial and temporal context on species movements. We draw on a diverse suite of topical organism movements to illustrate these concepts. Our restructured definitions allow for native species to move into or with rapidly shifting climatic regions, as well as identifying the inappropriate introduction of alien species to new areas. Moreover, our definitions framework forms a timely and essential component of adaptation policies and responses for invasive species management and the enhancement of biodiversity in a rapidly changing world.
 
Location of the Tioures travertine system in the Aigue Agnelle valley (Queyras Massif, French inner Alps).
Ombrothermic diagram for Queyras. Black dots correspond to mean monthly temperatures and white histograms to mean monthly precipitation. Data are obtained from the weather stations of Saint-Véran (2125 m a.s.l.).
Drawing of leaf imprints identified within the Tioures travertine. Cone and needles of Pinus uncinta were predominant.
of 230 Th / 234 U measurements and dates. The high values of 230 Th / 232 Th ratio, allow us to trust the dates obtained
Aims The present paper concerns the analysis of macro-remains (plant imprints) from high altitude travertine deposits dating back to the early Holocene (9800 BP). Our results allow us to discuss treeline location and ecology, and to supplement previous data based on pollen from natural sediments and charcoal from natural soil. Location The travertine under study is located in the Queyras massif, in the southern French Alps, along the Italian border. The site is situated on a south-facing slope. Methods The travertine deposit has been dated by 230Th/234U. Taxonomic identification of plant imprints was achieved by comparison of the morphology of fossil specimens with extant material. Results Imprints of Pinus uncinata (cones and needles), broad-leaved trees (Betula cf. pubescens, Populus tremula and Salix spp.), and unidentified trunks have been found. The plant assemblage records the existence at a high altitude (2200 m) of shade-intolerant vegetation at around 9800 BP. Our data indicate that the treeline limit was at least 100 m higher than previously thought. The morphological features of the travertine, the plant assemblage and trunk diameters indicate that during the travertinization process, vegetation around the site was probably dense with tall upright trees. Main conclusions Our data show that Pinus uncinata and broad-leaved trees developed at 2200 m, while regional pollen analyses locate the treeline at lower altitudes. Different research methods appear to provide different results. Around 9800 BP tree regeneration and growth were made possible up to at least 2200 m a.s.l., probably as a result of warmer and wetter summers. Warmer conditions are inferred from the predicted increase in incoming solar radiation based on calculated orbital variations, and wetter conditions are inferred from the build-up of the travertine.
 
Aim The hair of grazers provides an isotopic record of environmental and nutritional signals. Here, we assess the effect of altitude on the carbon and nitrogen isotope composition of the hair of ruminant grazers and its relation to grassland vegetation, to evaluate the use of hair isotope data for ecosystem reconstruction, animal nutritional ecology and biogeochemical studies in montane environments.Location European Alps.Methods We sampled grassland vegetation (pure C3) and the hair of ruminants along an altitudinal gradient (400–2500 m), and analysed their isotope composition (δ13C and δ15N). Results were compared with published effects of altitude on 13C in C3 plants at the species level and on 15N at the community level. The study was complemented with a comparison of diet and hair isotope composition in ruminants held in confinement.Results δ13C of hair increased (c. 1.1‰ km−1) and δ15N decreased (c. 1.1‰ km−1) with altitude. The same changes occurred in local grassland vegetation, and in regional to global grassland data sets. Offsets between hair and vegetation 13C or 15N (‘diet–hair shift’) were independent of altitude. Sheep (Ovis aries) and cattle (Bos taurus) exhibited a 13C shift near +3‰, but that of goats (Capra hircus) was larger (+4.2‰) in alpine environments and in confinement. The diet–hair shift for 15N was more variable (+2.1 to +3.6‰).Main conclusions Grazer hair provides a faithful spatially and temporally integrated record of grassland isotope composition, useful for ecosystem and environment reconstruction. The effect of altitude on hair 15N is important for studies of trophic relationships: an altitude shift of 2000 m produced the same effect in hair 15N as would a shift from an animal tissue-based to a plant-based diet. The similarity of altitude effects on δ13C of individual plant species, vegetation and hair indicates that the effect of altitude on species-level ‘intrinsic water use efficiency’ scales up linearly to the community and landscape level.
 
Aim To investigate latitudinal and altitudinal patterns in body size variation among north-west European land snail species, as well as factors influencing such patterns. Location Latitudinal patterns were investigated in north-west Europe from the British Isles and France in the west to Finland, Poland, Slovakia and Hungary in the east and from Norway in the north to France (with the exception of the Mediterranean part of the country), Switzerland, Austria and Hungary in the south. Altitudinal patterns were examined in the Alps in Austria and Switzerland. Methods Data on latitudinal ranges of 366 north-west European land snail species, on altitudinal ranges of 175 species from Austria and 150 species from Switzerland, and on their body sizes were used to test for the presence of interspecific latitudinal or altitudinal body size patterns. Four methods, Stevens’ method, the midpoint method, the across-species method, and a phylogenetically controlled analysis (CAIC) were applied. Results As a result of the predominance of some small bodied clades at higher latitudes and some large bodied clades at lower latitudes, body size of north-west European land snails decreases significantly with increasing latitude. However, little of the body size variation across species is explained by latitude and the phylogenetically controlled analysis showed that the decrease of body size with increasing latitude is not a result of repeated and independent evolution of an association between body size and latitude in many clades. There is no significant correlation between body size of land snail species and altitude in the Alps although a negative correlation of body size and altitude is frequent within species. Main conclusion If phylogenetic effects are controlled for, neither latitudinal nor altitudinal patterns in body size could be found. Bergmann's rule, which predicts a positive correlation between body size of species and latitude, could not be confirmed for north-west European land snails.
 
Division of North America into five latitudinal zones.
Taxonomic richness and species turnover for different latitudinal zones. 
Results of principal components (PC) analysis of climatic variables for quadrats (n = 313) in five latitudinal zones, based on the correlation matrix. 
Relationship between beta diversity at the species level, measured as the absolute value of slope of lnJ in relation to distance from , and (a) mean latitude, (b) mean annual temperature, (c) mean PC 1 score (first principal component of climatic data) and (d) mean species richness per quadrat of each latitudinal zone.
Mean and standard deviation of principal component (PC) scores within each latitudinal zone. 
Aim Spatial turnover of species, or beta diversity, varies in relation to geographical distance and environmental conditions, as well as spatial scale. We evaluated the explanatory power of distance, climate and topography on beta diversity of mammalian faunas of North America in relation to latitude. Location North America north of Mexico. Methods The study area was divided into 313 equal-area quadrats (241 × 241 km). Faunal data for all continental mammals were compiled for these quadrats, which were divided among five latitudinal zones. These zones were comparable in terms of latitudinal and longitudinal span, climatic gradients and elevational gradients. We used the natural logarithm of the Jaccard index (lnJ) to measure species turnover between pairs of quadrats within each latitudinal zone. The slope of lnJ in relation to distance was compared among latitudinal zones. We used partial regression to partition the variance in lnJ into the components uniquely explained by distance and by environmental differences, as well as jointly by distance and environmental differences. Results Mammalian faunas of North America differ more from each other at lower latitudes than at higher latitudes. Regression models of lnJ in relation to distance, climatic difference and topographic difference for each zone demonstrated that these variables have high explanatory power that diminishes with latitude. Beta diversity is higher for zones with higher mean annual temperature, lower seasonality of temperature and greater topographic complexity. For each latitudinal zone, distance and environmental differences explain a greater proportion of the variance in lnJ than distance, climate or topography does separately. Main conclusions The latitudinal gradient in beta diversity of North American mammals corresponds to a macroclimatic gradient of decreasing mean annual temperature and increasing seasonality of temperature from south to north. Most of the variance in spatial turnover is explained by distance and environmental differences jointly rather than distance, climate or topography separately. The high predictive power of geographical distance, climatic conditions and topography on spatial turnover could result from the direct effects of physical limiting factors or from ecological and evolutionary processes that are also influenced by the geographical template.
 
Map of Chile showing its 13 administrative regions stretching from the Andean Ranges westward to the Pacific Ocean, all sequentially laid southwards along the continental territory.
Relationship between pre-European (Jp) and current (Jc) similarities. Filled squares (a) show the actual relationship (observed values) between Jp and Jc indicating no change in floristic similarity (slope = 1, intercept = 0). Open squares (b) show a hypothetical relationship (expected values) assuming that the naturalized flora is more widely distributed than it is now.
Changes in floristic similarity (Ln(J)) in pre-European and current floras according to geographical distance (km). Lines are least-squares quadratic fits to the data for pre-European flora (solid line) and current flora (broken line). (b) Changes in floristic similarity (Ln(J)) in current flora according to geographical distance (km), where simulated extinction of native plants (solid line and filled squares) and the spread of naturalized ones (broken line and open squares) have been maximized.
Geographical turnover for native and naturalized plants according to Whittaker's index (W). Lines are least-squares quadratic fits to the data on native (solid line) and naturalized plants (broken line).
Aim To quantify the occurrence of floristic change in the vascular flora of Chile. We test whether continental areas have experienced floristic modification leading to either homogenization, differentiation or tracking.Location Continental Chile.Methods On the basis of the geographical distribution of native (1806 species) and naturalized plants (552 species) in continental Chile, we quantified change between two floristic stages: (1) pre-European flora, including native extant and extinct species; and (2) current flora, including native and naturalized species, but excluding extinct plants. We compared changes in compositional similarity (calculated by Jaccard's index, ΔJ) between pairs of regions, and similarity decay with respect to geographical distance. Additionally, by means of Whittaker's index, we examined species turnover, distinguishing between native and naturalized plants.Results Between floristic stages (pre-European vs. current flora) no significant changes in floristic similarity were noted at national or regional scales. Similarity decay showed no statistical differences between pre-European and current flora. Analysing patterns of geographical turnover, we found that species turnover of naturalized plants over their geographical range is similar to that of native plants.Conclusions The composition of the continental flora of Chile does not show significant modifications in similarity patterns after considering naturalized species, thus indicating floristic tracking. The causes of this phenomenon may be related to the current geographical distribution of naturalized plants, which closely parallels that of native plants. Our results differ from those obtained in Northern Hemisphere continents, thus indicating that trends of biotic change may differ between hemispheres.
 
Aim To test the hypothesis that plant species with a higher dispersal ability have a lower beta diversity. Location North America north of Mexico. Method Propagules of pteridophytes (ferns and their allies) are more vagile than propagules of spermatophytes (gymnosperms and angiosperms), and thus pteridophytes have a higher dispersal ability than do spermatophytes. The study area was divided into 71 geographical units distributed in five latitudinal zones. Species lists of pteridophytes and spermatophytes were compiled for each geographical unit. Three measures of beta diversity were used: βsim, which is one minus the Simpson index of similarity, βslope, which is the slope of the relationship between Simpson index and geographical distance, and β0.5-distance, which is the distance that halves the similarity from its initial value. Results Average βsim is higher for spermatophytes than for pteridophytes, regardless of whether the data are analysed for the whole continent or for latitudinal zones. Average βsim decreases with increasing latitude for both spermatophytes and pteridophytes. The difference in average βsim between the two plant groups increases with increasing latitude, indicating that beta diversity decreases with increasing latitude faster for pteridophytes than for spermatophytes. When the Simpson index is regressed against geographical distance, the regression slope (βslope) is steeper for spermatophytes than for pteridophytes, and the slope decreases with increasing latitude for both plant groups. Similarly, β0.5-distance was shorter for spermatophytes than for pteridophytes in each latitudinal zone and increased with increasing latitude for both plant groups. The results of the analyses using the three different measures of beta diversity are consistent. Main conclusions The fact that beta diversity is lower for pteridophytes with vagile propagules than for spermatophytes with less vagile propagules suggests that beta diversity is negatively related to dispersal ability.
 
Predicted carrying capacity for species richness (SK) for portions of the study area not significantly influenced by human land use. Spatial data are in the Lambert azimuthal equal area projection.
between mean observed landbird species richness and each of the predictor variables. Codes are defined in Tables 1 and 2.
Aim To demonstrate that the concept of carrying capacity for species richness (SK) is highly relevant to the conservation of biodiversity, and to estimate the spatial pattern of SK for native landbirds as a basis for conservation planning. Location North America. Methods We evaluated the leading hypotheses on biophysical factors affecting species richness for Breeding Bird Survey routes from areas with little influence of human activities. We then derived a best model based on information theory, and used this model to extrapolate SK across North America based on the biophysical predictor variables. The predictor variables included the latest and probably most accurate satellite and simulation-model derived products. Results The best model of SK included mean annual and inter-annual variation in gross primary productivity and potential evapotranspiration. This model explained 70% of the variation in landbird species richness. Geographically, predicted SK was lowest at higher latitudes and in the arid west, intermediate in the Rocky Mountains and highest in the eastern USA and the Great Lakes region of the USA and Canada. Main conclusions Areas that are high in SK but low in human density are high priorities for protection, and areas high in SK and high in human density are high priorities for restoration. Human density was positively related to SK, indicating that humans select environments similar to those with high bird species richness. Federal lands were disproportionately located in areas of low predicted SK.
 
Aim Geographic distributions of species are constrained by several factors acting at different scales, with climate assumed to be a major determinant at broad extents. Recent studies, however, have challenged this statement and indicated that climate may not dominate among the factors governing geographic distributions of species. Here, we argue that these results are misleading due to the lack of consideration of the geographic area that has been accessible to the species. Location North America. Methods We generated null distributions for 75 North American endemic and 19 non-endemic bird species. For each species, climatic envelopes of observed and null distributions were modelled using neural networks and generalized linear models, and seven climatic predictors. Values of the area under the receiver–operating characteristic curve (AUC) based on models of observed distributions were compared with corresponding AUC values for the null distributions. Results More than 82% of the endemic species showed AUC higher for the observed than for the null distributions, while 63% of the non-endemic species showed such a pattern. Main conclusions We demonstrate a dominant climatic signal in shaping North American bird distributions. Our results attest to the importance of climate in determining species distributions and support the use of climate-envelope models for estimating potential distributional areas at the appropriate spatial scales.
 
Habitat niche breadths of anuran species represented as weighted average (circles) of their occurrence at sites based on the ordination along RLQ axis 1. The whisker represents the distribution amplitude of the species (standard deviation). Vertical lines represent the scores of the study sites along the respective RLQ axis. Acronyms with numbers refer to individual species of particular geographic regions: AFRO, Afrotropics; NEO, Neotropics; INDO, Indomalaya. Numbering follows species sequence in Appendix S1. Closed arrow = first species of particular region occurring along niche-space gradient. Open arrow = last species of particular region occurring along niche-space gradient.
Results from multivariate fourth-corner tests performed on single regional and global data sets: (a) Neotropical, (b) Afrotropical, (c) Indomalayan, (d) global. Both permutation models 2 and 4 were combined (see Methods and Appendix S3). Black squares represent significant relationships. Significance is based on the square root-adjusted and Bonferroni corrected alpha =√0.05/8 = 0.079. Trait variables shaded in grey show significant phylogenetic signal in Abouheif's test (original phylogenetic proximity, 999 Monte Carlo permutations, P < 0.01). For full environmental and trait variable names see Table 1 and Appendix S1.
ratios between anuran traits (as defined in Appendix S1) and the first two RLQ axes.
Aim To investigate whether trait–habitat relations in biological communities converge across three global regions. The goal is to assess the role of habitat templets in shaping trait assemblages when different assembly mechanisms are operating and to test whether trait–habitat relations reflect a common evolutionary history or environmental trait filters. Location Guiana Shield, South America; Upper Guinea Forest Block, West Africa; Borneo rain forests, Southeast Asia. Methods We compared large anuran amphibian data sets at both the regional and cross-continental scale. We applied a combination of three-table ordinations (RLQ) and permutation model-based multivariate fourth-corner statistics to test for trait–habitat relationships at both scales and used phylogenetic comparative methods to quantify phylogenetic signal in traits that enter these analyses. Results Despite the existence of significant trait–habitat links and congruent trait patterns, we did not find evidence for the existence of a universal trait–habitat relationship at the assemblage level and no clear sign for cross-continental convergence of trait–habitat relations. Patterns rather varied between continents. Despite the fact that a number of traits were conserved across phylogenies, the phylogenetic signal varied between regions. Trait–habitat relations therefore not only reflect a common evolutionary history, but also more recently operating environmental trait filters that ultimately determine the trait composition in regional assemblages. Main conclusions Integrating trait–habitat links into analyses of biological assemblages can enhance the predictive power and general application of species assembly rules in community and macroecology, particularly when phylogenetic comparative methods are simultaneously applied. However, in order to predict trait composition based on habitat templets, trait–habitat links cannot be assumed to be universal but rather have to be individually established in different regions prior to model building. Only then can direct trait-based approaches be useful tools for predicting fundamental community patterns.
 
Aim General patterns of biodiversity, such as latitudinal gradients and species-area relationships, are found consistently in a wide range of organisms, but recent results for protist diversity suggest that organisms shorter than 2 mm do not display such patterns. We tested this prediction in bdelloid rotifers, pluricellular metazoans smaller than 2 mm, but with size and ecology comparable to protists. Location A single valley in northern Italy was surveyed in detail and compared to all available faunistic data on bdelloids worldwide. Methods We analysed 171 local assemblages of bdelloid rotifers living in 5 systems of dry mosses and submerged mosses in running water and in lakes. We compared patterns of alpha, beta, and gamma diversity, and nestedness of metacommunities, with those known from protists and larger organisms. Results Bdelloid rotifers showed low local species richness (alpha diversity), with strong habitat selection, as observed in larger organisms. The number of species differed among systems, with a higher number of species in dry than in aquatic mosses. There was no hierarchical structure or exclusion of species in the metacommunity pattern within each system. Local diversity for the entire valley was surprisingly high compared with worldwide bdelloid diversity, similar to observed patterns in protists. Main Conclusions Bdelloid rotifers have some of the peculiarities of protist biodiversity, although at slightly different spatial scales, thus confirming the idea of a major change in biodiversity patterns among organisms shorter than 2 mm. However, bdelloids show stronger habitat selection than protists. We suggest two possible explanations for the observed patterns: (1) dispersal is very rare, and not all bdelloid clones are arriving everywhere; and (2) dispersal is effective in displacing propagules, but environmental heterogeneity is very high and prevents many species from colonizing a given patch of moss.
 
Plots of mean effects for predictors of organism distribution in patchy landscapes across four major groups of animals. All means are presented with 95% confidence intervals. (a) Mean effects for predictors of animal abundance. (b) Mean effects for predictors of animal occupancy. The number of studies included in each calculation is indicated above the mean effect sizes.
Plot of mean effects of connectivity metrics on organism distribution in patchy landscapes. Binary metrics include information on patch characteristics only whereas matrix composition metrics describe structural aspects of land cover in the matrix separating patches. All means are presented with 95% confidence intervals. (a) Mean effects of connectivity metrics on organism abundance. (b) Mean effects of connectivity metrics on organism occupancy. The number of studies included in each calculation is indicated above the mean effect sizes.
Cross-tabulation of number of effects in the total data set across levels of landscape context (matrix heterogeneity and habitat cover), response (abundance and occupancy), and predictor (binary and matrix).
Aim Connectivity is a key determinant of the distribution and abundance of organisms and is greatly influenced by anthropogenic landscape modification, yet we lack a synthetic perspective on the magnitude and extent of matrix effects on connectivity. We synthesize results from published studies to understand the importance of matrix effects on fragmented animal populations. Location Global. Methods We conduct a meta-analysis of 283 fragmented populations representing 184 terrestrial animal taxa to determine the strength of matrix composition effects on the occurrence and abundance of animals in fragmented habitat. Results Studies that use data on matrix composition report greater effects on abundance and occupancy of fragmented populations than studies that define connectivity without regard to the surrounding matrix (i.e. ‘binary’ studies that describe only characteristics of patch habitat). Main conclusions Our findings underscore that conservation strategies must consider the importance of matrix habitat, have important implications for metapopulation and metacommunity paradigms, and provide direct large-scale, multi-taxa evidence that matrix habitat is an important driver of ecological dynamics in heterogeneous landscapes.
 
Continued
Historic and current area (in 1000 km 2 ) and north-south linear extent (in 1000 km) of the distribution of galaxiids.
Distribution of Galaxias maculatus in relation to latitude (from north to south) and distance to sea (proportional to the country width). Black circles, rivers; white circles, lakes. Names of some systems are presented as references.
Proportion of four Galaxiidae species and the two dominant salmonids in the latitudinal gradient, for both coastal (34–42° S) and Andean basins (36–47° S).
Mean lacustrine species richness in the elevation gradient the Aysén region (northern Chilean Patagonia), including native and non-native species. Error bars indicate SE.
Aim Globally, one of the major threats to the integrity of native faunas is the loss of biodiversity that can result from the introduction of exotics. Here we document recent changes in the distribution of five common fish species that are linked to introductions in Chile. Location Chile from 28° S to 54° S. Methods We assess the extent of changes in distribution of galaxiid species by comparing their historical and current distributions based on the results of the most extensive survey of freshwater fishes in Chile to date, a range that encompasses the full latitudinal and elevational range of the Galaxiidae in Chile. We test for relationships of the distributions and abundances of native fishes with the incidence of introduced species. Results The latitudinal range of Galaxias maculatus has declined by 26%, and most of this reduction has occurred in the northern part of its range. Aplochiton taeniatus and Brachygalaxias bullocki have experienced reductions (8–17% loss) in total drainage area occupied, and they have disappeared from, or are now extremely difficult to find, in latitudes 36° to 41° S, coincidently with areas of urban growth and intense economic activities. The distribution of Galaxias platei has, instead, increased considerably. In northern basins, G. maculatus has apparently been replaced by an introduced poeciliid Gambusia sp. High-elevation systems remain dominated by native Galaxias platei, whereas systems at intermediate elevations, especially rivers, are now dominated by introduced salmonids. Within drainages, native galaxiids remain abundant where exotic salmonid abundance is low. Main conclusions We suggest that negative interactions between introduced and native fish are responsible for some of the range reductions among Galaxiidae in Chile. The severity of the impacts varies with latitude and altitude and is probably related to temperature. The effects of Gambusia are restricted to warmer systems. Native fish also appear to have found temperature refugia from salmonids; impacts are low in the warmer northern and coastal systems, as well as in high-altitude relatively cold systems. Native fish also appear less vulnerable to salmonids in lakes than in rivers. This study identifies watersheds critical for the conservation of biodiversity within the Galaxiidae.
 
Map of the Iberian Peninsula and North Africa showing the geological origin, limits and nomenclature of the subregions in the sampled area. (b) Map with the subregions examined in the study (Iberian Plate, Transitional, Betic and Rif zones) and symbols for community and genetic samples (see Appendices S2 and S3 for detailed information on site location). All sites were included within the limits of the Mediterranean climate, the boundary of which is shown according to Köppen (1931).
Species accumulation curves for each geological subregion. Curves were determined by a logistic model and their characteristic parameters (A, K, t50; see text) are given. The value of t90 (the number of sites required to collect 90% of total taxa in a region) and the surface area sampled (S) in each subregion (see ) are also shown.
Correspondence analysis (CA) of caddisfly presence/absence in the 142 sampling sites. ‘d’ indicates the scale of the graph and the ellipses envelop 70% of sites of each subregion (top graph; I = Iberian Plate, T = Transition, B = Betic, R = Rif) and of each altitude category (bottom graph; 1 = higher than 1500 m a.s.l., 2 = between 1000 and 1500 m a.s.l., 3 = between 500 and 1000 m a.s.l., 4 = between 250 and 500 m a.s.l., 5 = lower than 250 m a.s.l.). Axes 1 and 2 explained 4.93% and 4.63% of the total variability, respectively.
Haplotype network of 23 unique cytochrome C oxidase subunit I (COI) gene haplotypes of Chimarra marginata with their corresponding subregional location (Iberian Plate, Transitional, Betic and Rif zones) and nested design for nested clade analysis. Each line corresponds to a mutational step between two given haplotypes and each small circle to a missing intermediate. Boxes represent the n-step clades with roman numbers indicating the nesting size and arabic numerals showing the clade number. Asterisks identify clades with significant geographical associations (for exact geographical location of haplotypes see Appendix S3).
Aim To examine how the employment of both community- and population-level approaches can provide a wider view of the importance of contemporary and historical factors on current species distribution. We posit that community ecology should provide more information about contemporary factors, whereas population genetics should provide better information about historical factors. Location Rivers of the western Mediterranean Basin, including four subregions differing in geological history: the Iberian Plate, Transitional, Betic and Rif. Methods For a community-level approach, Trichoptera richness and community composition were compared between subregions using species accumulation curves and a correspondence analysis. For a population-level approach, the mtDNA cytochrome C oxidase subunit I (COI) gene of specimens of the Trichoptera midstream-lowland species Chimarra marginata (L.) was sequenced and analysed using phylogeographical methods. Results The community approach revealed that historical events had more influence on headwater communities than contemporary ecological factors, whereas historical events had negligible influence on midstream-lowland communities. In midstream-lowland sites, however, the population approach showed that the genetic structure of C. marginata differed significantly between subregions and revealed patterns of historical gene migration. In terms of species richness, the Rif subregion had the lowest value per basin due to local climatic features and isolation. Main conclusions Both community- and population-level approaches yielded information about the effects of historical factors on species distribution. However, the importance of historical events on current Trichoptera communities depends on the river zonation. Unlike headwater sites, midstream-lowland sites showed signs of historical events at the population level but not at the community level at the scale used, indicating that both approaches should be employed together in biogeographical studies. Lack of detection of historical events at the community level does not necessarily mean that they are negligible. Most likely, the organizational level used is not appropriate. We also stress the importance of implementing conservation measures for rivers in the western Mediterranean, especially under future scenarios of climate change and human disturbances in the Mediterranean Basin.
 
Aim To undertake a quantitative review of the Quaternary fossil record of European water beetles to evaluate their geographical and temporal coverage, and to characterize the extent and typology of the shifts in their geographical ranges.Location Europe.Methods We compiled Quaternary water beetle records from public databases and published references. We included in the analyses species of 10 families of aquatic Coleoptera, and recorded range shifts through the comparison of the location of fossil remains with the current distribution of the species. We explored the ecological representativeness of the fossil record, as well as the relationship between range shifts and the habitat type of the species.Results Our final data set included over 9000 records for 259 water beetle species. Fossil remains of aquatic beetles have been documented exclusively north of 42° N, with most of the records from the British Isles and virtually none from southern Europe or the Mediterranean Basin. Over 80% of the records were from the Late Glacial and the Holocene periods (the last 15 kyr), and overall approximately 20% of the species have been recorded outside their present range (23% excluding Holocene records). Most range shifts were southern or western extensions of currently widespread, northern species, with 10 species displaying major range shifts through the Palaearctic. Lentic species were significantly more likely to have experienced major range shifts, even accounting for the general ecological bias of the fossil record towards lentic habitats.Main conclusions Our results show that the Quaternary record of aquatic Coleoptera is geographically, temporally and ecologically skewed, necessitating caution when extrapolating general conclusions about range changes and ecological stability to other areas or periods on the basis of such scattered evidence. Most central and northern European species for which there are fossil records seem to have conserved their ranges through the Late Pleistocene, with geographical shifts mostly restricted to species with current widespread north Palaearctic or Holarctic distributions. Major range shifts through the Palaearctic are taxonomically uneven, suggesting either an idiosyncratic behaviour of taxa depending on ecological or phylogenetic factors, or a sampling artefact produced by the limited availability of taxonomic expertise.
 
Aim Our objective was to evaluate the influence of distinct macroecological factors (space, floristics and environment) on the variation in seed dispersal strategies of shrubs and trees in the Araucaria forest biome in the southern and south-eastern Brazilian highlands. We hypothesize that history-related factors (space, floristics) are major determinants of the proportion of endo- and syn-zoochorous species in Araucaria forests, despite the current gradients in environmental conditions. Location Araucaria forest is the main forest biome in southern Brazil, at altitudes above 500 m a.s.l. (latitude ≤ 30° S). Their northern limit in Brazil is at latitude 20° S, where forests occur at elevations above 1000 m a.s.l. Methods We compiled information from 27 floristic checklists comprising shrub and tree species distributed along the geographical range of the Brazilian Araucaria forest biome. We classified species as zoochorous and non-zoochorous, based on morphological attributes of their diaspores. Sites were described by geographical coordinates (latitude, longitude) and five environmental variables. We evaluated separately the influence of floristic, spatial and environmental variables on zoochory using correspondence analysis and linear regressions. Further, we evaluated causal connections between these variable groups using Mantel tests and path analysis. Results Zoochory increased with both latitude and longitude. Regression analysis showed that rainfall seasonality was the only environmental variable explaining the variation in the proportion of zoochorous species. All pairwise Mantel correlations between space, rainfall seasonality, floristics and zoochory were significant. Path analysis showed that rainfall seasonality was strongly determined by spatial distances between sites, and floristics was directly determined by rainfall seasonality. Further zoochory was mostly determined by floristics. Main conclusions Taking into account historical factors in the interpretation of macroecological patterns improves our understanding of biodiversity gradients. Hypotheses based on long-term dynamics of distinct floristic groups provide some useful insights into patterns shown by studies elsewhere. Here we offer an analytical solution to incorporate history-related factors into macroecological analyses. While history-based hypotheses do not replace any other ideas concerning macroecological patterns, they are likely to improve our understanding on factors determining present-day ecological patterns.
 
Aim To investigate the formation of nestedness and species co-occurrence patterns at the local (sampling station), the intermediate (island group), and the archipelago scale. Location The study used data on the distribution of terrestrial isopods on 20 islands of the central Aegean (Greece). These islands are assigned to two distinct subgroups (Kyklades and Eastern islands). Methods The Nestedness Temperature Calculator was used to obtain nestedness values and maximally nested matrices, the EcoSim7 software and a modified version of Sanderson (2000) method were used for the analysis of species co-occurrences. Idiosyncratic temperatures of species and the order of species placement in the maximally nested matrices were used for further comparisons among spatial scales. The relationships of nestedness values with beta-diversity, habitat diversity and a number of ecological factors recorded for each sampling station were also investigated. Results Significant nestedness was found at all spatial scales. Levels of nestedness were not related to beta-diversity or habitat diversity. Nestedness values were similar among spatial scales, but they were affected by matrix size. The species that contributed most to the nested patterns within single islands were not the same as those that produce nestedness at the archipelago scale. There was significant variation in the frequency of species occurrence among islands and among spatial scales. There was no direct effect of ecological factors on the shaping of patterns of nestedness within individual islands, but habitat heterogeneity was crucial for the existence of such patterns. Positive associations among species prevailed at all scales when species per station were considered, while negative associations prevailed in the species per island matrices. All associations resulted from the habitat structure of sampling stations and from particularities of geographical distributions. Conclusions There was no clear-cut distinction between nestedness patterns among spatial scales, even though different species, and partially different factors, contributed to the formation of these patterns in each case. There was a core of species that contributed to the formation of nested patterns at all spatial scales, while the patterns of species associations suggested that biotic interactions are not an important causal factor. The results of this study suggest that locally rare species cannot be widespread at a higher spatial scale, while locally common species can have a restricted distribution.
 
Aim Vegetation exhibiting landscape-scale regular spatial patterns has been reported for arid and semi-arid areas world-wide. Recent theories state that such structures are bound to low-productivity environments and result from a self-organization process. Our objective was to test this relationship between periodic pattern occurrence and environmental factors at a global scale and to parametrize a predictive distribution model. Location Arid and semi-arid areas world-wide. Methods We trained an empirical predictive model (Maxent) for the occurrence of periodic vegetation patterns, based on environmental predictors and known occurrences verified on Landsat satellite images. Results This model allowed us to discover previously unreported pattern locations, and to report the first ever examples of spotted patterns in natural systems. Relationships to the main environmental drivers are discussed. Main conclusions These results confirm that periodic patterned vegetations are ubiquitous at the interface between arid and semi-arid regions. Self-organized patterning appears therefore to be a biome-scale response to environmental conditions, including soil and topography. The set of correlations between vegetation patterns and their environmental conditions presented in this study will need to be reproduced in future modelling attempts.
 
Aim We examined the relative contributions of spatial gradients and local environmental conditions to macroinvertebrate assemblages of boreal headwater streams at three hierarchical extents: bioregion, ecoregion and drainage system. We also aimed to identify the environmental variables most strongly related to assemblage structure at each study scale, and to assess how the importance of these variables is related to regional context and spatial structuring at different scales. Location Northern Finland (62–68° N, 25–32° E). Methods Variation in macroinvertebrate data was partitioned using partial canonical correspondence analysis into components explained by spatial variables (nine terms from the cubic trend surface regression), local environmental variables (15 variables) and spatially structured environmental variation. Results The strength of the relationship between assemblage structure and local environmental variables increased with decreasing spatial extent, whereas assemblage variation related to spatial variables and spatially structured environmental variation showed the opposite pattern. At the largest extents, spatial variation was related to latitudinal gradients, whereas spatial autocorrelation among neighbouring streams was the likely mechanism creating spatial structure within drainage systems. Only stream size and water acidity were consistently important in explaining assemblage structure at all study scales, while the importance of other environmental variables was more context-dependent. Main conclusions The importance of local environmental factors in explaining macroinvertebrate assemblage structure increases with decreasing spatial extent. This scale-related pattern is not caused solely by changes in study extent, however, but also by variable sample sizes at different regional extents. The importance of environmental gradients is context-dependent and few factors are likely to be universally important correlates of macroinvertebrate assemblage structure. Finally, our results suggest that bioassessment should give due attention to spatial structuring of stream assemblages, because important assemblage gradients may not only be related to local factors but also to biogeographical constraints and neighbourhood dispersal processes.
 
Aim To assess the hypothesis that free-living prokaryotes show a pattern of ‘no biogeography’ by examining the scaling of soil prokaryotic diversity and by comparing it with other groups’ biogeographical patterns. Location Two sites in the tropical deciduous forest of Chamela, Jalisco, on the western coast of Mexico. Methods We examined the diversity and distribution of soil prokaryotes in two 8 × 8 m quadrats divided in such manner that we could sample at four spatial scales. Restriction fragment length polymorphisms of 16S rRNA genes were used to define operational taxonomic units (OTUs) that we used in lieu of species to assess diversity. Results We found highly structured species assemblages that allowed us to reject multiple predictions of the hypothesis that soil bacteria show ‘no biogeography’. The frequency distribution of range size (measured as the occupancy of quadrats) of OTUs followed a hollow curve similar to that of vertebrates on continents. Assemblages showed high levels of beta diversity and a non-random nested pattern of diversity. OTU diversity scaled with area followed a power function with slopes z = 0.42 and 0.47. Main conclusions We demonstrate a non-ubiquitous dispersal for soil prokaryotes, which suggests a complex biogeography similar to that found for terrestrial vertebrates.
 
Aim and Location Our aim is to develop pollen–climate inference models for southern Europe and to test their performance and inference power by cross-validation with modern climate data. Surface sediments collected from lakes along a climate gradient from the winter-cold/summer-wet Alps to winter-wet/summer-dry Sicily were analysed for modern pollen assemblages. Methods For each lake, mean monthly temperatures, seasonal precipitation and site-specific climate uncertainties have been estimated. Pollen–climate relationships were studied using numerical analyses, and inference models were derived by partial least squares (PLS) and weighted-averaging PLS (WA-PLS) regressions for January and July temperatures (T), and for winter, spring and summer precipitation (P). In order to assess whether these variables are also of ecological importance for vegetation in the subregions, we split the data set into an Alpine and a Mediterranean subset. Results Low bootstrap cross-validated root mean square errors of prediction (RMSEP) for January T (1.7 °C), July T (2.1 °C) and summer P (38 mm), as well as low RMSEPs expressed as a percentage of the gradient length (8–9%), indicate a good inference power. Models revealed excellent to good performance statistics for January T, July T and summer P (r2= 0.8), and for winter and spring P (r2=c. 0.5). We show that the variables with the highest explanatory power differ between the two subregions. These are summer T and P for the Alpine set, and January T, winter P and July T for the Mediterranean set. Main conclusions The study reveals the influence of climatic conditions during the growing season on modern pollen assemblages and indicates the potential of pollen data for long-term climate reconstructions of parameters such as winter precipitation and temperature, which seem to be the main factors having an influence on the variability of Mediterranean climate. These models may therefore provide important information on past regional climate variability in southern Europe.
 
Aim This paper describes the development of novel indices of bird-habitat preference to examine bird species’ use of habitats and their distributions relative to habitats. It assesses the implications for bird conservation regionally and the scope for biodiversity assessments generally. Location A 200 km by 400 km area of farmland with seminatural and urban areas, covering south-eastern England. Methods Cluster analysis was used to link birds to landscapes. Cluster centroid coordinate values were processed to derive indices of bird-habitat preference. Further developments assessed the relative values of individual habitats for birds. Results Clustering objectively linked birds to landscapes. Maps of the clusters showed strong regional patterns associated with distinctive habitat assemblages. Derived indices related bird species directly to individual habitats and habitats to birds. Even rare species and scarce habitats showed successful linkages, often to each other. Objective corroboration strongly supported the associations of coastal, wetland, urban and woodland birds and habitats; but, it suggested that farmland birds, whose numbers have nearly halved since 1977, may prefer alternative habitats. Main conclusions Land cover maps from remote sensing provide an effective way to link birds to habitats and vice versa. Thus, generalized habitat maps might be used to extrapolate localized or sample-based bird observations or the results of autecological studies, helping to predict and understand bird distributions in the wider countryside. The weak links between farmland birds and farmland habitats in a region dominated by farming, suggests that reasons for the decline in farmland birds may be deep seated and thus hard to reverse. The procedures described are repeatable elsewhere and applicable more generally to evaluate landscapes and biodiversity. It is suggested that remote sensing could rarely be bettered as a means of assessing habitats, comprehensively, over wide areas, in most parts of the world.
 
Aim To test whether congeneric species are significantly associated with one another in space, either positively or negatively. Also, to provide a framework for a causal investigation of co-occurrence patterns by a parallel comparison of interactions in geographical and ecological data matrices.Location For the analysis of congeneric species’ co-occurrences we used 30 matrices covering a wide range of taxa and geographical areas, while for the causal investigation we used the distribution of 50 terrestrial isopod species on 20 islands and 264 sampling stations in the central Aegean archipelago, as well as a number of ecological variables for each sampling station.Methods We developed a software program (cooc) that incorporates the species-by-species approach to co-occurrence analysis using EcoSim's output of prior null model analysis of co-occurrence. We describe this program in detail, and use it to investigate one of the most common assembly rules, namely, the decreased levels of co-occurrence among congeneric species pairs. For the causal analysis, we proceed likewise, cross-checking the results from the geographical and the ecological matrices. There is only one possible combination of results that can support claims for direct competition among species.Results We do not get any strong evidence for widespread competition among congeneric species, while most communities investigated do not show significant patterns of species associations. The causal analysis suggests that the principal factors behind terrestrial isopod species associations are of historical nature. Some exceptional cases are also discussed.Main conclusions Presence/absence data for a variety of taxa do not support the assembly rule that congeneric species are under more intense competition compared to less related species. Also, these same data do not suggest strong interactions among species pairs, regardless of taxonomic status. When significant species associations can be seen in such matrices, they mainly reflect the effects of history or of habitat requirements.
 
Aim The bioclimatic model is a new method for palaeoclimatic reconstruction built on the assumption of a significant correlation between climate and mammal community composition. The goal of this approach is to infer past climatic conditions using mammal fossil associations as source data. Location The study used mammal faunas from all over the world to develop the bioclimatic model. As an example of the potential of the model, we have applied it to Quaternary faunas from Eurasia. Methods The proposed model was constructed by applying multivariate discriminant analysis to modern mammal faunas and climates from throughout the world. The model was validated with a different set of modern faunas than those used in the discriminant analysis, including some from transitional zones between different climates (ecotones). To test the reliability of the method in the Pleistocene, the results have been compared to those obtained with data from other disciplines, such as palaeobotany. Results The results obtained in the validation of the model show that more than 90% of the localities have been classified correctly. Comparisons of results in the late Pleistocene-Holocene of Barová between a palaeobotanical study and the bioclimatic analysis show the latter to be highly accurate. The results for early Pleistocene faunas show somewhat drier and more open climatic conditions for Europe than the present day, with larger areas of steppe environments. Main Conclusions The bioclimatic model could be used to infer climatic conditions from mammal faunas. The results presented in this work provide a preliminary example of the potential that bioclimatic analysis has as a tool for palaeoclimatic inference. Finally, this method offers the opportunity to standardize data coming from vertebrate palaeontology for use in the construction and evaluation of climatic models.
 
Aim We assessed how avian biodiversity and above-ground carbon storage were related in different forest age-classes, including mature stands (> 100 years), in a managed, mixed-species eucalypt forest. Location Gippsland, south-eastern Australia. Methods In 50 2-ha stands ranging in age from ≤ 5 years to mature stands > 100 years, we undertook repeated avian surveys, performed detailed habitat measurements and estimated amounts of above-ground carbon. Extensive wildfire reduced the number of sites to 28 (seven in each of four age classes) upon which analyses and inferences were made. We also analysed data on carbon storage and some bird responses from previously published studies. Results Mature vegetation (> 100 years) had the greatest richness, abundance and biomass of birds. Key ecological resources, such as tree-hollows for nesting, generally occurred mostly in stands > 60 years. Avian richness per unit of above-ground carbon storage was relatively low for stands of 20–60 years. While above-ground carbon storage appeared to increase in a monotonic fashion as stands age and mature, there were quantum increases in all measures of avian biodiversity in mature stands (> 100 years). Main conclusions Our results suggest that carbon is organized in a different way, with substantially greater biodiversity benefits, in very old stands. Mature vegetation simultaneously maximizes both avian biodiversity and above-ground carbon storage. These results bolster arguments for allocating highest priorities to the preservation of old-growth forest stands rather than alternative investments (e.g. reafforestation for carbon sequestration).
 
Aim Tropical forests have been recognized as important global carbon sinks and sources. However, many uncertainties about the spatial distribution of live tree above-ground biomass (AGB) remain, mostly due to limited availability of AGB field data. Recent studies in the Amazon have already shown the importance of large sample size for accurate AGB gradient analysis. Here we use a large stem density, basal area, community wood density and AGB dataset to study and explain their spatial patterns in an Asian tropical forest. Location Borneo, Southeast Asia. Methods We combined stem density, basal area, community wood density and AGB data from 83 locations in Borneo with an environmental database containing elevation, climate and soil variables. The Akaike information criterion was used to select models and environmental variables that best explained the observed values of stem density, basal area, community wood density and AGB. These models were used to extrapolate these parameters across Borneo. Results We found that wood density, stem density, basal area and AGB respond significantly, but differentially, to the environment. AGB was only correlated with basal area, but not with stem density and community wood specific gravity. Main conclusions Unlike results from Amazonian forests, soil fertility was an important positive correlate for AGB in Borneo while community wood density, which is a main driver of AGB in the Neotropics, did not correlate with AGB in Borneo. Also, Borneo's average AGB of 457.1 Mg ha−1 was c. 60% higher than the Amazonian average of 288.6 Mg ha−1. We find evidence that this difference might be partly explained by the high density of large wind-dispersed Dipterocarpaceae in Borneo, which need to be tall and emergent to disperse their seeds. Our results emphasize the importance of Bornean forests as carbon sinks and sources due to their high carbon storage capacity.
 
Aim To analyse how the patterns of species richness for the whole family Phyllostomidae determine the structure of diversity fields (sets of species-richness values) within the ranges of individual bat species. Location The range of the family Phyllostomidae in North and South America. Methods We generated a database of the occurrence of 143 phyllostomid bat species in 6794 quadrats, analysing the species-richness frequency distribution for all sites, and for subsets of sites defined by the geographic ranges of species. Range–diversity plots, depicting simultaneously the size and the mean species richness of ranges, were built to explore the patterns of co-occurrence in widespread and restricted species. We compared the empirical patterns against two null models: (1) with scattered (non-cohesive) ranges, and (2) with cohesive ranges modelled with the spreading-dye algorithm. Diversity fields were analysed with richness maps for individual species and with comparisons of species-richness frequency distributions. Results Overall richness frequency distribution showed a multimodal pattern, whereas simulated distributions showed lower values of variance, and were unimodal (for model 1) and bimodal (for model 2). Range–diversity plots for the empirical data and for the cohesive-ranges simulation showed a strong tendency of species to co-occur in high-diversity sites. The scattered-ranges simulation showed no such tendency. Diversity fields varied according to idiosyncratic features of species generating particular geographic patterns and richness frequency distributions. Main conclusions Phyllostomid bats show a higher level of co-occurrence than expected from null models. That tendency in turn implies a higher variance in species richness among sites, generating a wider species-richness frequency distribution. The diversity field of individual species results from the size, shape and location of ranges, but also depends on the general pattern of richness for the whole family.
 
Aim The aim of this study was to analyse whether, and how, the inclusion of habitat specialists and edge-preferring species modifies the species–area relationship predictions of the island biogeography theory for an insect group (ground beetles, Coloptera: Carabidae) living in natural fragments. Species–habitat island area relationships applied to terrestrial habitat islands can be distorted by the indiscriminate inclusion of all species occurring in the fragments. Matrices surrounding terrestrial habitat fragments can provide colonists that do not necessarily distinguish the fragment from the matrix and can survive and reproduce there. Edge-preferring species can further distort the expected relationship, as smaller fragments have larger edge:core ratios.
 
Aim We assessed the rates of turnover of tree species with distance (beta diversity) in wet forests of the Western Ghats (WG) complex of India to see whether climate, topographic variation or species traits influence beta diversity. Location The Western Ghats is a chain of mountains about 1600 km in length, running parallel to the western coast of the Indian Peninsula from above 8° N to almost 21° N latitude. Methods We used data from 60 small plot inventories concentrated in three regions: the southernmost part of the Western Ghats (SWG) (8°24′ to 9°37′ N), the Nilgiri Hills (11°12′ to 11°14′ N), and the central Western Ghats (CWG) (12°32′ to 14°51′ N). We used Sorensen's index (SI) to estimate the similarity in species composition between two plots and regressed SI against the logarithm of the distance between plots to assess beta diversity. A bootstrapping procedure provided confidence intervals for regression coefficients. To test for the effects of climate, we regressed seasonality differences between plots against SI for low-elevation (< 800 m) plots along the north–south axis, and all plots in the SWG. We assessed the impact of the rainfall gradient in the Kogar region. Results Among all three regions, beta diversity was highest along the latitudinal axis, and along the rainfall gradient in the Kogar region. Differences in seasonality between sites were strongly related to beta diversity along the north–south seasonality gradient and within the SWG. Within the three regions, beta diversity was highest in the region with the strongest rainfall gradient and lowest for the topographically heterogeneous SWG. Beta diversity did not differ between forest strata and dispersal modes. Main conclusions We conclude that climate, particularly seasonality, is probably the primary driver of beta diversity among rain forest trees of the Western Ghats complex.
 
Aim We tested the hypothesis that shredder detritivores, a key trophic guild in stream ecosystems, are more diverse at higher latitudes, which has important ecological implications in the face of potential biodiversity losses that are expected as a result of climate change. We also explored the dependence of local shredder diversity on the regional species pool across latitudes, and examined the influence of environmental factors on shredder diversity. Location World-wide (156 sites from 17 regions located in all inhabited continents at latitudes ranging from 67° N to 41° S). Methods We used linear regression to examine the latitudinal variation in shredder diversity at different spatial scales: alpha (α), gamma (γ) and beta (β) diversity. We also explored the effect of γ-diversity on α-diversity across latitudes with regression analysis, and the possible influence of local environmental factors on shredder diversity with simple correlations. Results Alpha diversity increased with latitude, while γ- and β-diversity showed no clear latitudinal pattern. Temperate sites showed a linear relationship between γ- and α-diversity; in contrast, tropical sites showed evidence of local species saturation, which may explain why the latitudinal gradient in α-diversity is not accompanied by a gradient in γ-diversity. Alpha diversity was related to several local habitat characteristics, but γ- and β-diversity were not related to any of the environmental factors measured. Main conclusions Our results indicate that global patterns of shredder diversity are complex and depend on spatial scale. However, we can draw several conclusions that have important ecological implications. Alpha diversity is limited at tropical sites by local factors, implying a higher risk of loss of key species or the whole shredder guild (the latter implying the loss of trophic diversity). Even if regional species pools are not particularly species poor in the tropics, colonization from adjacent sites may be limited. Moreover, many shredder species belong to cool-adapted taxa that may be close to their thermal maxima in the tropics, which makes them more vulnerable to climate warming. Our results suggest that tropical streams require specific scientific attention and conservation efforts to prevent loss of shredder biodiversity and serious alteration of ecosystem processes.
 
Aim Two of the oldest observations in plant geography are the increase in plant diversity from the poles towards the tropics and the global geographic distribution of vegetation physiognomy (biomes). The objective of this paper is to use a process-based vegetation model to evaluate the relationship between modelled and observed global patterns of plant diversity and the geographic distribution of biomes. Location The global terrestrial biosphere. Methods We implemented and tested a novel vegetation model aimed at identifying strategies that enable plants to grow and reproduce within particular climatic conditions across the globe. Our model simulates plant survival according to the fundamental ecophysiological processes of water uptake, photosynthesis, reproduction and phenology. We evaluated the survival of an ensemble of 10,000 plant growth strategies across the range of global climatic conditions. For the simulated regional plant assemblages we quantified functional richness, functional diversity and functional identity. Results A strong relationship was found (correlation coefficient of 0.75) between the modelled and the observed plant diversity. Our approach demonstrates that plant functional dissimilarity increases and then saturates with increasing plant diversity. Six of the major Earth biomes were reproduced by clustering grid cells according to their functional identity (mean functional traits of a regional plant assemblage). These biome clusters were in fair agreement with two other global vegetation schemes: a satellite image classification and a biogeography model (kappa statistics around 0.4). Main conclusions Our model reproduces the observed global patterns of plant diversity and vegetation physiognomy from the number and identity of simulated plant growth strategies. These plant growth strategies emerge from the first principles of climatic constraints and plant functional trade-offs. Our study makes important contributions to furthering the understanding of how climate affects patterns of plant diversity and vegetation physiognomy from a process-based rather than a phenomenological perspective.
 
Aim To understand cross-taxon spatial congruence patterns of bird and woody plant species richness. In particular, to test the relative roles of functional relationships between birds and woody plants, and the direct and indirect environmental effects on broad-scale species richness of both groups. Location Kenya. Methods Based on comprehensive range maps of all birds and woody plants (native species > 2.5 m in height) in Kenya, we mapped species richness of both groups. We distinguished species richness of four different avian frugivore guilds (obligate, partial, opportunistic and non-frugivores) and fleshy-fruited and non-fleshy-fruited woody plants. We used structural equation modelling and spatial regressions to test for effects of functional relationships (resource–consumer interactions and vegetation structural complexity) and environment (climate and habitat heterogeneity) on the richness patterns. Results Path analyses suggested that bird and woody plant species richness are linked via functional relationships, probably driven by vegetation structural complexity rather than trophic interactions. Bird species richness was determined in our models by both environmental variables and the functional relationships with woody plants. Direct environmental effects on woody plant richness differed from those on bird richness, and different avian consumer guilds showed distinct responses to climatic factors when woody plant species richness was included in path models. Main conclusions Our results imply that bird and woody plant diversity are linked at this scale via vegetation structural complexity, and that environmental factors differ in their direct effects on plants and avian trophic guilds. We conclude that climatic factors influence broad-scale tropical bird species richness in large part indirectly, via effects on plants, rather than only directly as often assumed. This could have important implications for future predictions of animal species richness in response to climate change.
 
Top-cited authors
Norman C Duke
  • James Cook University
Larry L. Tieszen
  • United States Geological Survey
Andrés Baselga
  • University of Santiago de Compostela
Zhiliang Zhu
  • United States Geological Survey
Giri Chandra
  • United States Environmental Protection Agency