Wiley

Cancer Medicine

Published by Wiley

Online ISSN: 2045-7634

Disciplines: Obstetrics & gynecology

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Autophagy process consists of several sequential steps. (1) Initiation. (2) Phagophore nucleation. (3) Phagophore elongation. (4) Fusion of autophagosome with lysosome and degradation of cargo in autolysosome.
Overview of signaling pathways involved in the regulation of autophagy. (1) Growth factors and nutrients can induce PI3K, which activates AKT and subsequently mTORC1. Also, the activated AKT induce mTORC1 through TSC1/2 inhibition. (2) Growth factors inducethe Ras–Raf–MEK‐ERK1/2 signaling pathway. This pathway can directly induce autophagy. ERK complex can inhibit TSC1/2 complex, leading to activating mTORC1. (3) Under starvation and stress condition, Bcl2 is phosphorylated by JNK1 and thereby separated from Beclin1. Then, Beclin1 induces Vps34 complex formation, an important protein complex in the autophagy process. (4) P53 has different roles in autophagy. Under stress conditions, p53 nuclear localization promotes autophagy inducers such as DRAM and DAPK1. Nevertheless, cytoplasmic p53 leads to autophagy inhibition through Beclin1 and AMPK blocking.
Autophagy: A challengeable paradox in cancer treatment

February 2023

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1,256 Reads

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34 Citations

Farnaz Ahmadi‐Dehlaghi

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Elahe Valipour

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Aims and scope


Cancer Medicine is an open access, interdisciplinary oncology journal providing rapid publication of research from global biomedical researchers across the cancer sciences. Indexed in Medline and Web of Science, we cover the breadth of oncology: clinical cancer research, cancer biology, cancer prevention, and bioinformatics.

Recent articles


Flowchart illustrating selection criteria of the study population. Population selection (n = 25,026) for analysis of the association between NPAR and cancer. And the population selection of various cancers (n = 2374) was presented to analyze the relationship between NPAR and cancer mortality. The 10th revised edition (ICD‐10) based on the International Statistical Classification of Diseases and Related Health Problems defined the cause of cancer mortality: malignant neoplasms (019‐043).
Kaplan–Meier survival curves for mortality outcomes. (A) All‐cause mortality, (B) cancer‐related mortality, (C) skin cancer‐related mortality, and (D) prostate cancer‐related mortality.
Restricted cubic spline analysis of the nonlinear relationship between continuous NPAR and hazard ratio. Non‐linear relationship of NPAR and the risk of all‐cause mortality in pan‐cancer (A), skin cancer (B), and urinary system cancer (C).
The Association Between Neutrophil‐Percentage‐to‐Albumin Ratio (NPAR) and Mortality Among Individuals With Cancer: Insights From National Health and Nutrition Examination Survey
  • Article
  • Full-text available

January 2025

Xinyang Li

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Meng Wu

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Minxin Chen

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Dawei Chen

Background Neutrophils interact with tumor cells, potentially exacerbating cancer progression. Additionally, decreased albumin levels are a marker of poor cancer prognosis. The neutrophil‐percentage‐to‐albumin ratio (NPAR) has been used for prognostic assessment in non‐cancerous diseases, but its relationship with mortality risk in cancer patients has not been explored. Therefore, we utilized data from the National Health and Nutrition Examination Survey (NHANES) to investigate the correlation between NPAR and the risks of all‐cause mortality and cancer‐related mortality among cancer patients. Methods This study leveraged comprehensive NHANES data spanning 2005–2016. We analyzed the relationship between NPAR and the risks of cancer incidence, all‐cause mortality, and cancer‐related mortality using weighted Logistic and Cox regression models, as well as trend tests. Restricted cubic spline analysis was employed to investigate NPAR's nonlinear relationship with mortality risk. Furthermore, Kaplan–Meier survival analysis was utilized to assess patient prognoses across varying NPAR levels. Results Elevated NPAR was associated with an increased risk of all‐cause mortality and cancer‐related mortality in cancer patients (p < 0.05), with higher NPAR values correlating with greater risk (p‐trend < 0.05). However, no significant association between NPAR and cancer incidence was observed (p > 0.05). Our analysis further identified a non‐linear relationship between NPAR and all‐cause mortality risk (p‐nonlinear < 0.05), while no non‐linear relationship was found with cancer‐related mortality risk. The relationship is characterized by an optimal NPAR value, correlating with the lowest hazard ratio (HR). Deviations from this optimal NPAR result in increased all‐cause mortality risk (p < 0.05). Kaplan–Meier analysis indicated superior survival rates in patients with lower NPAR values compared to those with higher NPAR values (p < 0.05). Conclusions According to our study, higher NPAR was associated with an increased risk of all‐cause mortality and cancer‐related mortality in cancer patients.


Sankey diagram showing the therapeutic evolution of Cohort A (n = 224) at four timepoints: Their original histology at transurethral resection, neoadjuvant chemotherapy status, histology at surgical resection and follow‐up of their metastatic status after surgery. N/A: not assessed (lost to follow up), N: no, NeoCTX: neoadjuvant chemotherapy; pCR: pathologic complete response; SCNEC‐URO: small cell neuroendocrine carcinomas of the urinary tract; TUR: transurethral resection, Y: yes.
Cumulative incidence function curves for metastasis by histology at resection, neoadjuvant chemotherapy status, primary cancer type, and stage at resection. CIF: cumulative incidence function; N: no, neoCTx: neoadjuvant chemotherapy; pCR: pathologic complete response; SCNEC: small cell neuroendocrine carcinoma; Y: yes.
Distribution of anatomic sites among patients with metastatic recurrence in Cohort A (n = 92). LNs: lymph nodes.
Histopathologic Progression and Metastatic Relapse Outcomes in Small Cell Neuroendocrine Carcinomas of the Urinary Tract

January 2025

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1 Read

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Georges C. Tabet

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Arlene O. Siefker‐Radtke

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Omar Alhalabi

Introduction Small cell neuroendocrine carcinoma of the urinary tract (SCNEC‐URO) has an inferior prognosis compared to conventional urothelial carcinoma (UC). Here, we evaluate the predictors and patterns of relapse after surgery. Materials and Methods We identified a definitive‐surgery cohort (n = 224) from an institutional database of patients with cT1‐T4NxM0 SCNEC‐URO treated in 1985–2021. Histopathologic review was conducted by independent pathologists. Relapse event was the time‐to‐event outcome, and relapse probabilities were estimated using a competing risk method with cumulative incidence functions (CIFs). Fine‐Gray distribution models assessed covariate associations. Results Most patients (161, 71.9%) received neoadjuvant chemotherapy (neoCTX). Ninety two (41%) patients had relapse with 77 (83.7%) having distant organs as first metastatic sites, including 10 (10.9%) with exclusive central nervous system (CNS) metastases, mostly (9/10) within 1 year of surgery. Patients with pathologic complete response (pCR) after neoCTx had the lowest 5‐year CIF (16.5% [95% CI 9.3%–25.6%]). Patients with remaining exclusively small cell (SC) histology had the highest CIF (85.7% [95% CI 46.6–96.9]). Patients with eradicated SCNEC but remaining UC components had an intermediate‐risk CIF (32.5% [95% CI 18.6–47.2]). Multivariable analysis adjusting for neoCTx, clinical stage at diagnosis (T3/4, N0/N+ vs. T1/T2, N0), and pathologic stage (pN+ vs. pN0) demonstrated that any SCNEC histology at resection (vs. pCR) was associated with relapse risk (hazard ratio = 3.69 [95% CI 1.91–7.13], p = 0.0001). Conclusions SCNEC‐URO is a systemic disease with high risk of distant relapse including CNS. Our findings highlight unmet needs for neoadjuvant/adjuvant approaches targeting the rare SCNEC subtype and suggest adding CNS surveillance within the first year after definitive surgery to high‐risk patients. Précis (Condensed Abstract) Alongside neoadjuvant chemotherapy and cancer stage, histology at resection strongly impacts relapse risk in small cell neuroendocrine carcinomas of the urinary tract. The incidence of brain metastasis is notably higher than in “traditional” urothelial cancer within the first year after surgery, especially if small cell cancer persists, thus necessitating close neurological monitoring during this period.


YTHDF1 Regulates RELA m6A Modification and Activates the NF‐Kappa B Signaling Pathway to Promote the Mechanism of Gastric Cancer

Background Gastric cancer (GC) is an important cause of death. Molecular targeted therapy and immunotherapy are progressing rapidly. It is very important to explore the pathogenesis pathways of GC and provide strong support for its treatment. However, the mechanism of occurrence and development of GC is still unclear. Methods Online databases and immunohistochemistry (IHC) of clinical samples were used to analyze the differential expression of YTHDF1 in the GC and nearby tissues, and its effect on survival prognosis. In vitro experimental study of GC, other mechanisms and functional analyses were specifically designed and performed too. Results Online data and clinical samples analysis showed that the expression of YTHDF1 in GC was markedly elevated compared to surrounding tissues. Higher YTHDF1 levels were correlated with worse survival outcomes. Analysis of correlation with clinical parameters showed that the expression level of YTHDF1 exhibited a favorable correlation with lymphatic metastases, as well as with PD‐1 and PD‐L1 levels. In vitro studies of YTHDF1 overexpression have demonstrated its ability to enhance GC cell growth and migration while inhibiting apoptosis. Based on our results, RELA is a downstream target of YTHDF1, and YTHDF1 triggers the NF‐κB signaling pathway by regulating RELA translation. Conclusion In comparison to adjacent tissues, GC exhibits significantly elevated YTHDF1 expression. Increased YTHDF1 expression in the GC is correlated with decreased patient survival. Lymph node metastasis and the expression of PD‐1 and PD‐L1 are positively correlated with YTHDF1 levels. YTHDF1 inhibits apoptosis while promoting the migration and proliferation of GC. Additionally, it stimulates the NF‐κB pathway and controls the translation of RELA.


Study flow diagram.
Drivers of Palliative Care and Hospice Use Among Patients With Advanced Lung Cancer

January 2025

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1 Read

Purpose Despite rigorous evidence of improved quality of life and longer survival, disparities in the utilization of palliative and hospice care persist for racial and ethnic minority patients with cancer. This study evaluated the impact of psychosocial factors on utilization of these services. Methods Patients with advanced lung cancer were recruited at a large academic urban hospital. Patients were surveyed about their knowledge of palliative care and hospice and their beliefs regarding medical mistrust, lung cancer care, palliative care and hospice. We used univariate and multivariable logistic regression analyses to examine the association between mistrust, knowledge and beliefs among the entire cohort and minority (Black and Hispanic) and non‐minority patients on utilization of palliative care consultation and hospice care use. Results Ninety‐nine of the enrolled participants had a mean age of 64 years. Minority patients were more likely to receive a palliative care referral (p < 0.001) and attend a consult (p = 0.003). Similarly, they were more likely to receive a hospice referral (p = 0.04), however there was no difference in hospice care use based on minority status (p = 0.102). In our adjusted model, older patients and those reporting negative lung cancer beliefs were more likely to receive hospice care (OR: 1.06, 95% CI: 1.004–1.138; OR: 1.04, 95% CI: 1.002–1.093, respectively). Conclusion Minority patients with advanced lung cancer were more likely to receive a palliative care referral and specialty level consultation when compared to non‐minority patients. Our work highlights the importance of proactive referral processes in facilitating access to palliative and hospice services, particularly among younger patients.


Kaplan–Meier curves for biochemical recurrence (BCR) stratified by (A) presence or absence of positive surgical margin (PSM) and (B) PSM length.
Impact of Centralisation of Radical Prostatectomy Driven by the Introduction of Robotic Systems on Positive Surgical Margin and Biochemical Recurrence in pT2 Prostate Cancer

January 2025

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2 Reads

Background To assess how centralisation of cancer services via robotic surgery influenced positive surgical margin (PSM) occurrence and its associated risk of biochemical recurrence (BCR) in cases of pT2 prostate cancer (PC). Methods Retrospective analysis of all radical prostatectomy (RP) cases performed in the West of Scotland during the period from January 2013 to June 2022. Primary outcomes were PSM and BCR. The secondary outcomes compared the impact of centralisation and surgical approach on PSM and BCR; and margin length and location on BCR. Propensity score matching and Cox regression models were performed using R. Results A total of, 907 patients were included; 662 robot assisted radical prostatectomy (RARP), 245 open RP. PSM rate was 17.7% (161/907), similar in RARP and open cohorts. Patients with PSM had higher rates of BCR; 26.7%, compared to 8.7% in patients with no PSM. Patients with margins of ≥ 1 mm had higher risk of developing BCR. Patients who underwent open RP had increased incidence of PSM ≥ 1 mm; 40/43 (93%) compared to 83/117 (71%) in robotic approach (p = 0.003). Limitations include the study being retrospective, introduction of centralisation and robot concurrently, and evolution of practice. Discussion PSMs in pT2 PC are associated with higher rates of BCR. Introduction of centralisation via the robot had no impact on PSM occurrence or BCR, although did demonstrate a reduction in PSM length.


ImmuCellAI and WGCNA results. (A) Infiltration abundance of different immune cells in ESCC (Derived by ImmuneCellAI). (B) The correlation between the magenta module and macrophages in GSE161533. (C) The correlation between the red module and macrophages in GSE23400. (D) Venn diagram showing the intersection between the magenta module in GSE161533 and the red module in GSE23400.
Expression differential analysis and survival analysis results for ITGB2. (A–C) Expression differential analysis results. (A) GSE161533. (B) GSE23400. (C) UCSC Toil RNAseq. (D–F) Kaplan–Meier curves for different survival metrics. (D) Overall survival (OS). (E) Disease‐specific survival (DSS). (F) Progression‐free interval (PFI). (G) WB results of tumor samples and normal tissue samples. (H) Differential analysis of WB based on quantification using ImageJ. (I) Representative IHC images of tumor samples and normal tissue samples. (J) Differential analysis of IHC based on quantification using ImageJ. * indicates p < 0.05, *** indicates p < 0.001.
The analysis results of single‐cell sequencing data. (A) Expression profile of ITGB2 across different cell types. (B) Pseudotime analysis results of macrophages. (C) M2 polarization levels of macrophages at different time points. (D) Differential expression levels of ITGB2 in macrophages between early and late stage ESCC. (E) Correlation between macrophage development and intracellular expression levels of ITGB2. (F) Correlation between intracellular expression levels of ITGB2 and M2 polarization levels of macrophages.
Analysis results of the correlation between the target gene ITGB2 and immune cell infiltration in ESCC, along with the results of dual immunofluorescence. (A–C) Correlation of ITGB2 expression with various immune cells across different datasets. (A) GSE161533. (B) GSE23400. (C) TCGA. (D–F) Correlation of ITGB2 expression with macrophage infiltration across different datasets. (D) GSE161533. (E) GSE23400. (F) TCGA. (G) Representative immunofluorescence images; red fluorescence represents ITGB2, and green fluorescence represents CD163; yellow light is produced by the overlap of red and green fluorescence. (H) Correlation analysis results between the fluorescence intensity of ITGB2 protein and the fluorescence intensity of CD163 protein. (I) Coloc2 results for all samples. (J) Representative co‐localization analysis results of all samples.
Analysis results of the correlation between the target gene ITGB2 and macrophage markers, its association with immunotherapy, and the exploration of upstream miRNAs. (A–C) The correlation between ITGB2 and known primary targets of macrophages in different datasets. (A) GSE161533. (B) GSE23400. (C) TCGA. (D) The correlation between ITGB2 expression in ESCC and 16 immune therapeutic response‐related TME signatures. (E) miRNAs with a binding probability greater than 0.9 in miRWork. (F) Key miRNAs obtained through screening. (G) Differential expression of key miRNAs between ESCC and normal esophageal tissues in GSE66274. (H) Differential expression of key miRNAs between ESCC and normal esophageal tissues in GSE67268.
Macrophage Infiltration and ITGB2 Expression in ESCC: A Novel Correlation

Background Esophageal squamous cell carcinoma (ESCC) is one of the most prevalent and lethal malignancies worldwide. Despite progress in immunotherapy for cancer treatment, its application and efficacy in ESCC remain limited. Therefore, there is an ongoing need to explore potential molecules and therapeutic strategies related to tumor immunity in ESCC. Methods In this study, we integrated high‐throughput sequencing data, gene chip data, single‐cell sequencing data, and various bioinformatics analysis methods along with experimental approaches to identify key genes involved in immune infiltration in ESCC and investigate their relationship with immune cell development, as well as the potential of these key genes in immunotherapy. Results We discovered and validated a positive correlation between macrophage infiltration and ITGB2 expression in ESCC. ITGB2 is overexpressed in ESCC and has potential as a prognostic biomarker for the disease. We present for the first time the finding that the expression of ITGB2 in infiltrating macrophages increases as these macrophages polarize toward a tumor‐promoting phenotype in ESCC. Moreover, during the progression of ESCC, ITGB2 expression in infiltrating macrophages is upregulated. The higher the expression of ITGB2, the more feasible it is to target macrophages. Additionally, we found that evaluating immune therapy responses in ESCC patients through ITGB2 expression is a viable approach. Furthermore, we identified three miRNAs associated with abnormal ITGB2 expression, providing insights into the upstream molecular interactions of ITGB2. Conclusions Macrophage infiltration in ESCC is closely associated with ITGB2, which holds significant potential for immunotherapy applications in ESCC. Based on our findings and prior studies, we propose a novel hypothesis: inducing M1 macrophages in vitro, knocking out ITGB2, and then reinfusing these ITGB2‐knockout M1 macrophages into ESCC patients may represent a promising new immunotherapy strategy, providing a new avenue for ESCC immunotherapy.


Prognostic Factors and Nomogram for Malignant Brainstem Ependymoma: A Population‐Based Retrospective Surveillance, Epidemiology, and End Results Database Analysis

Purpose This study aimed to identify prognostic factors and develop a nomogram for survival in patients with brainstem ependymoma. Methods Data of 652 patients diagnosed with brainstem ependymoma extracted from the Surveillance, Epidemiology, and End Results (SEER) registry from 2000 to 2020 were analyzed. Univariate and multivariable Cox regression analyses were performed to examine factors influencing overall survival (OS). Receiver operating characteristic curve (ROC) and calibration curves were used to verify the nomogram. The Kaplan–Meier method was used to analyze OS based on treatment methods stratification or different age patterns. Results Six independent prognostic factors of patients with brainstem ependymoma were identified, including age, race, marital status, radiation, gross total resection (GTR), and histology. A comprehensive nomogram model was developed utilizing these predictors identified through multivariable Cox regression analysis. Furthermore, we found that patients with GTR have improved overall survival than patient with no surgery and biopsy only or with partial resection (GTR vs. no: p = 0.0004, GTR vs. partial resection: p = 0.022). Patients with radiation have improved overall survival than patient without radiation (p = 0.00013). Patients with GTR combined radiation therapy have improved overall survival than patient without or with GTR or radiation therapy only (p < 0.0001). Different treatment methods have no significant difference in the overall survival probability of the elderly group. Conclusions Individuals who are Black and anaplastic ependymomas were negative risk factors for brainstem ependymoma associated with an increased risk of mortality. Patients aged < 50 years with GTR and radiation always had better survival.


Immunoinfiltration Analysis of Mitochondrial Damage‐Related Genes in Lung Adenocarcinoma and Construction of a Classification and Prognostic Model Integrated With WGCNA and Machine Learning Algorithms

January 2025

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2 Reads

Background Lung adenocarcinoma (LUAD) exhibits molecular heterogeneity, with mitochondrial damage affecting progression. The relationship between mitochondrial damage and immune infiltration, and Weighted Gene Co‐expression Network Analysis (WGCNA)‐derived biomarkers for LUAD classification and prognosis, remains unexplored. Aims The objective of our research is to identify gene modules closely related to the clinical stages of LUAD using the WGCNA method. Based on the genes within these modules, we constructed machine learning (ML) models for classification and prognosis prediction, thereby facilitating precise diagnosis and personalized treatment of LUAD. Materials & Methods Using GeneCards and The Cancer Genome Atlas (TCGA) databases, we screened differentially expressed mitochondrial damage‐related genes in LUAD. Immune cell infiltration patterns were assessed using Single‐Sample Gene Set Enrichment Analysis (SSGSEA) method. Functional enrichment analyses were conducted to explore biological functions and signaling pathways. Gene modules related to clinical stages of LUAD were identified by WGCNA. ML models were constructed for classification and prognosis prediction, and validated in an independent Gene Expression Omnibus (GEO) dataset. Results The study revealed a significant relationship between mitochondrial damage and immune infiltration in LUAD. We identified a gene module closely associated with the clinical stages of LUAD. The ML models for classification and prognosis that were constructed demonstrated good effectiveness and generalization capabilities. Discussion Mitochondrial damage‐related genes are crucial in LUAD progression and linked to immune infiltration. The gene module and models identified have potential applications in LUAD classification and prognosis, offering novel markers for precision medicine. Conclusion This study uncovers the relationship between mitochondrial damage and immune infiltration in LUAD, paving the way for molecular classification, prognosis prediction, and personalized treatment strategies.


Prognostic Significance and Therapeutic Potential of SERPINE1 in Head and Neck Squamous Cell Carcinoma

Background This study aims to elucidate the expression pattern of SERPINE1, assess its prognostic significance, and explore potential therapeutic drugs targeting this molecule. Methods and Results In this study, we delved into the variations in gene mutation, methylation patterns, and expression levels of SERPINE1 in head and neck squamous cell carcinoma (HNSCC) and normal tissues, leveraging comprehensive analyses of The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) datasets. The connection between the biological function of the gene and prognosis was scrutinized through immune infiltration and enrichment analyses. Concurrently, we assessed the potential therapeutic value of SERPINE1 through drug sensitivity analysis. It was observed that, particularly in human papillomavirus (HPV) negative HNSCC, SERPINE1 exhibited elevated expression levels, correlating with poorer prognosis. The infiltration levels of eight cell types, such as eosinophils, Tgd, and macrophages, showed a positive correlation with SERPINE1 expression, whereas infiltration levels of four cell types, including cytotoxic cells, B cells, and pDCs, displayed a negative correlation. Furthermore, copy number variations of SERPINE1 were primarily characterized by homologous amplification, positively correlating with its expression, while methylation showed an inverse correlation. The outcomes of drug sensitivity analysis underscored the potential of SERPINE1 as a therapeutic target. Conclusion Elevated expression of SERPINE1 in HNSCC is intricately linked with adverse prognostic outcomes and has the potential to influence the immune microenvironment. Subsequent investigations are imperative to fully elucidate the prognostic implications of SERPINE1 as a biomarker and to unlock its therapeutic promise as a target for intervention.


PRISMA extension for scoping reviews diagram.
Use of Digital Health Interventions for Cancer Prevention Among People Living With Disabilities in the United States: A Scoping Review

Background The use of digital health strategies for cancer care increased dramatically in the United States over the past 4 years. However, a dearth of knowledge remains about the use of digital health for cancer prevention for some populations with heath disparities. Therefore, the purpose of the present scoping review was to identify digital health interventions for cancer prevention designed for people with disabilities. Methods This scoping review was guided by the Preferred Reporting Items for Systematic Reviews and Meta‐Analyses extension for scoping reviews and the Arksey and O'Malley methodological framework. The Embase, PubMed, Ovid MEDLINE, and CINAHL/EBSCO databases were searched for peer‐reviewed articles published from database inception to February 5, 2024. Reports published in English of studies that employed digital health strategies for cancer prevention, were conducted among people with disabilities regardless of age, and were conducted in the United States were included. Findings Following screening for eligibility, seven articles were identified. The types of disabilities were cancer (n = 4), bipolar I or II disorder (n = 1), obesity (n = 1), and deafness (n = 1). Interventions focused on education (n = 4), screening (n = 3), smoking cessation (n = 3), physical activity (n = 1), and cessation support (n = 1). Digital health strategies consisted of educational content delivered online, text messaging, interactive educational games, and downloadable informational applications. The common outcome of interest across all manuscripts was intervention efficacy. Interpretation Overall, limited research is available to evaluate the use of digital health for cancer prevention among people with disabilities. This review identified gaps in knowledge that, if addressed, may help guide continued innovation in the use of digital health strategies for cancer prevention among people with disabilities.


PRISMA flowchart showing the search and study selection process.
(A) Forest plot for meta‐analysis of Q2 versus Q1 of GGT effect on all GI cancers; (B) forest plot for meta‐analysis of Q3 versus Q1 of GGT effect on all GI cancers; (C) forest plot for meta‐analysis of Q4 versus Q1 of GGT effect on all GI cancers; (D) funnel plot for meta‐analysis A; (E) funnel plot for meta‐analysis B; (F) funnel plot for meta‐analysis C; and (G) Copas adjustment for meta‐analysis of Q4 versus Q1.
of meta‐analyses for comparison of GGT quartiles in terms of GI cancer's incidence and their subgroups.
Molecular association of GGT elevation, insulin resistance, and cancer incidence. (1) Systemic inflammation, marked by TNF‐a elevation, activates TRAF [67, 68]. (2) TRAF activates ASK1 by dissociating it from thioredoxin [85, 86]. (3) Activated ASK1 induces MAP2K, MKK4, and MKK7 to activate JNK by phosphorylation [66, 69]. (4) pJNK binds to mitochondrial scaffold SAB and is stabilized in its active form. SAB dissociates from PTPN6 to attach to pJNK [69–72]. (5) pJNK phosphorylates IRS‐1 at serine residues, turning IRS‐1 resistant to serum insulin levels [67, 73]. (6) pJNK also induces apoptosis, autophagy, and immunity evasion by activating P53. BCL, AREG, PD‐LI, and inhibiting mTOR [73, 74]. (7) JNK also activates ITCH, a ligase that degrades cFLIP by ubiquitination [69, 73, 75, 76]. (8) cFLIP is an antiapoptotic protein that inhibits ASK1 activation. Conclusively, Activation of ITCH by JNK leads to positive feedback that further increases the activated JNK level [69, 73, 75, 76]. (9) As SAB dissociates from PTPN6 to bind to JNK, the freed PTPN6 dephosphorylates SRC from its active form [77–80]. (10) SRC, when active, protects mitochondrial respiration by stabilizing the oxygen transport chain. Inactive SRC leads to transport chain dissociation and ROS elevation [77–80]. (11) High ROS levels induce elevation of anti‐oxidative pathways, and. (12) GGT rises as a consequence [81–84]. (13) Anti‐oxidative pathways also inhibit ITCH activation, thereby acting as negative feedback by inhibiting ASK‐1 and JNK activation [75, 76].
The Association Between Serum Gamma‐Glutamyl Transferase and Gastrointestinal Cancer Risk: A Systematic Review and Meta‐Analysis

Background Gamma‐glutamyl transferase (GGT) has been shown to have associations with several diseases including cancers. Previous studies have investigated the effect of GGT levels on the gastrointestinal (GI) cancer incidence. We aim to systematically investigate these studies to provide better insights into the interrelationship between GGT and GI cancers. Methods Online databases were searched to find relevant studies investigating different GGT levels' effects on the incidence of GI cancers including colorectal, esophageal, liver, pancreas, gastric, and biliary duct cancers. Random‐effect meta‐analysis was conducted to pool the hazard ratios (HRs) of GGT quartiles (Qs) effect on cancer incidence. Results A total of 26 studies were included in the final review, 12 of which underwent meta‐analysis that investigated 11 million patients. Based on the meta‐analysis, Q4 patients had a 69% higher hazard of GI cancer incidence (HR 1.69, 95% CI 1.41–2.02, p‐value < 0.001). The hazard ratio significance was also similar for Q3 (HR 1.22, 95% CI 1.15–1.30, p‐value < 0.001) and Q2 (HR 1.10, 95% CI 1.05–1.16, p‐value =0.002) of GGT. Colorectal and liver cancers showed a higher hazard ratio among Q2, Q3, and Q4 of GGT compared to Q1. In pancreas and bile duct cancers, only Q4 of GGT had significantly higher HR. Q3 and Q4 of GGT levels had statistically significant associations with gastric cancer incidence. Conclusion Higher GGT levels correlate with higher rates of GI cancer incidence, especially in colorectal and hepatic cancers. Future studies should investigate this biomarker's potential role in risk assessment for digestive cancers.


An Overview of In Vitro Models of Alcohol‐Related Hepatocellular Carcinoma

Background Chronic and excessive alcohol consumption is the leading cause of death due to chronic liver disease. Alcohol‐related liver disease (ALD) encompasses a broad spectrum of clinical and pathological features, ranging from asymptomatic and reversible pathologies to hepatocellular carcinoma (HCC), a highly prevalent and deadly liver cancer. Indeed, alcohol consumption is one of the main worldwide etiologies of HCC. However, the impact of alcohol consumption on HCC pathophysiology and the associated mechanisms remains unclear. Thus, in vitro alcohol‐related HCC models are essential for addressing this issue and for assessing new molecular markers of this disease. In this review, we discuss the current in vitro models of alcohol‐related HCC. Our global overview demonstrates the lack of uniformity regarding HCC cell lines, alcohol concentration, and duration of alcohol exposure among existing models. Despite efforts to model alcohol exposure effectively that demonstrate enhancement of cancer cell transformation markers and HCC aggressiveness following, respectively, short‐term and long‐term alcohol exposure, current in vitro models possess numerous limitations. Aim This review highlights future challenges in the development of more integrated and representative models of the complex pathophysiology of alcohol‐related HCC.


The MIR181A2HG/miR‐5680/VCAN‐CD44 Axis Regulates Gastric Cancer Lymph Node Metastasis by Promoting M2 Macrophage Polarization

Background Lymphatic metastasis in gastric cancer (GC) profoundly influences its prognosis, but the precise mechanism remains elusive. In this study, we identified the long noncoding RNA MIR181A2HG as being upregulated in GC and associated with LNs metastasis and prognosis. Methods The expression of MIR181A2HG in GC was identified through bioinformatics screening analysis and qRT‐PCR validation. Both in vitro and in vivo functional studies revealed that MIR181A2HG facilitates lymphangiogenesis and lymphatic metastasis. Techniques such as immunofluorescence, immunohistochemistry, qRT‐PCR, ELISA, CHIP, RNA‐pulldown, luciferase reporter assay, and Co‐IP were employed to investigate the mechanism of MIR181A2HG in LNs metastasis of GC. Results MIR181A2HG overexpressed in GC signifies an unfavorable prognosis and drives M2 polarization of TAMs enhancing lymphangiogenesis. Mechanistically, MIR181A2HG/miR‐5680 axis as a novel ceRNA regulatory axis to upregulate versican (VCAN). On one hand, VCAN interacts with CD44 receptors on the surface of TAMs through paracrine secretion, promoting M2 macrophage polarization and subsequently enhancing the secretion of VEGF‐C, ultimately facilitating lymphangiogenesis. On the other hand, VCAN binds to CD44 receptors on the surface of GC cells through autocrine secretion, activating the Hippo pathway and upregulating SP1, thereby promoting the transcription of MIR181A2HG and establishing a feedback loop driving lymphatic metastasis. Conclusion This study highlights the pivotal role of MIR181A2HG in GC progression and LNs metastasis. MIR181A2HG‐based targeted therapy would represent a novel strategy for GC.


The proposed pharmacokinetic structural model of MTX and 7‐OHMTX in pediatric patients. Dose, dosage in the MTX central compartment (the zero‐order administration rate A0); A1 and A2 are the MTX amounts in the central and peripheral compartments, respectively; A3 is the 7‐OHMTX amount in the central compartment.
Diagnostic goodness‐of‐fit plots of the final model. The left side displays the diagnostic map of MTX, whereas the right side displays the diagnostic map of 7‐OHMTX. (A) Concentration observations versus individual predictions (IPRED). (B) Concentration observations versus population predictions (PRED); the black solid lines in (A) and (B) mean the line of unity y = x. (C) Conditional weighted residuals (CWRES) versus time after dose (TAD). (D) CWRES versus PRED; the blue solid lines in (C) and (D) are the trend lines and the red solid lines are the absolute value distribution of the data.
Prediction‐corrected visual prediction checks for the final model of (A) MTX and (B) 7‐OHMTX. Blue dots represent observed concentrations; red lines represent the 2.5th, 50th, and 97.5th quartiles of observed concentrations; black lines represent the 2.5th, 50th, and 97.5th quartiles of simulated values; and shaded areas represent 95% confidence intervals for the 2.5th, 50th, and 97.5th quartiles of simulated values.
Comparison of (A) Cmax, (B) AUC0‐48 of MTX and 7‐OHMTX, (C) percentage of 7‐‐OHMTX to MTX and (D) MTX + 2.25‐fold 7‐OHMTX concentration between the groups. The median (black line in the violin) values are displayed. Each dot represents a single sample.
Receiver operating characteristic (ROC) curve for nephrotoxicity.
Impact of Methotrexate and 7‐Hydroxymethotrexate Exposure on Renal Toxicity in Pediatric Non‐Hodgkin Lymphoma

January 2025

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3 Reads

Background 7‐Hydroxymethotrexate (7‐OHMTX) is the main metabolite in plasma following high‐dose MTX (HD‐MTX), which may result in activity and toxicity of the MTX. Moreover, 7‐OHMTX could produce crystalline‐like deposits within the renal tubules under acidic conditions or induce renal inflammation, oxidative stress, and cell apoptosis through various signaling pathways, ultimately leading to kidney damage. The objectives of this study were thus to explore the exposure–safety relationship of two compounds and search the most reliable marker for predicting HDMTX nephrotoxicity. Method A total of 280 plasma concentration data (140 for MTX and 140 for 7‐OHMTX) for 60 pediatric patients with non‐Hodgkin lymphoma (NHL) were prospectively collected. Plasma MTX and 7‐OHMTX concentrations were determined using a high‐performance liquid chromatography tandem mass spectrometry (HPLC–MS/MS) method. A nonlinear mixed effect model approach was used to build a joint population pharmacokinetic (PopPK) model. After validation, the model estimated the peak concentration (Cmax) and area under the curve within the initial 48 h (AUC0‐48h) of the patients after drug administration by Bayesian feedback. The receiver operating characteristic (ROC) curves were generated to identify an exposure threshold associated with nephrotoxicity. Results A three‐compartment chain model (central and peripheral compartments for MTX and central compartment 7‐OHMTX) with the first‐order elimination adequately characterized the in vivo process of MTX and 7‐OHMTX. The covariate analysis identified that the aspartate aminotransferase (AST) was strongly associated with the peripheral volume of distribution of MTX. Moreover, the Cmax of MTX and 7‐OHMTX showed significant differences (p < 0.0001, p = 0.0472, respectively) among patients with or without nephrotoxicity. Similarly, individuals with nephrotoxicity also exhibited substantially higher ratio of 7‐OHMTX to MTX peak concentration and the sum of MTX + 2.25 times the concentration of 7‐OHMTX (p < 0.0001, p = 0.0426, respectively). By ROC analysis, the Cmax of MTX and 7‐OHMTX had the greatest area under the curve (AUC) values (0.769 and 0.771, respectively). A Cmax threshold of 9.26 μmol/L for MTX or a Cmax threshold of 0.66 μmol/L for 7‐OHMTX was associated with the best sensitivity/specificity for toxicity events (MTX: sensitivity = 0.886; specificity = 0.70; 7‐OHMTX: sensitivity = 0.886; specificity = 0.70). Conclusions We demonstrated that the Cmax of MTX and 7‐OHMTX were the most reliable markers associated with nephrotoxicity and proposed a Cmax threshold of 9.26 μmol/L for MTX and 0.66 μmol/L for 7‐OHMTX as the point with a high risk of nephrotoxicity. Altogether, this study may contribute to crucial insights for ensuring the safe administration of drugs in pediatric clinical practice.


A Mitochondria‐Related Signature in Diffuse Large B‐Cell Lymphoma: Prognosis, Immune and Therapeutic Features

January 2025

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4 Reads

Background Distinctive heterogeneity characterizes diffuse large B‐cell lymphoma (DLBCL), one of the most frequent types of non‐Hodgkin's lymphoma. Mitochondria have been demonstrated to be closely involved in tumorigenesis and progression, particularly in DLBCL. Objective The purposes of this study were to identify the prognostic mitochondria‐related genes (MRGs) in DLBCL, and to develop a risk model based on MRGs and machine learning algorithms. Methods Transcriptome profiles and clinical information were obtained from the Gene Expression Omnibus (GEO) database. The risk model was defined using Least Absolute Shrinkage and Selection Operator (Lasso) regression algorithm, and its prognostic value was further examined in independent datasets. Patients were stratified into two clusters based on the risk scores, additionally a nomogram was generated based on the risk score and clinical characteristics. Gene pathway level, microenvironment, expression of targeted therapy‐associated genes, response to immunotherapy, drug sensitivity, and somatic mutation status were compared between clusters. Results Eighteen prognostic MRGs (DNM1L, PUSL1, CHCHD4, COX7A1, CPT1A, CYP27A1, POLDIP2, PCK2, MRPL2, PDK3, PDK4, MARC2, ACSM3, COA7, THNSL1, ATAD3B, C15orf48, TOMM70A) were identified to construct the risk model. Remarkable discrepancies were observed between groups. The high‐risk group had shorter overall survival, less immune infiltration, lower CD20 and higher PD‐L1 expression than the low‐risk group. Distinct immune microenvironment, responses to immunotherapy and predictive drug IC50 values were found between groups. Conclusions We established a novel prognostic mitochondria‐related signature by machine learning algorithm, which also demonstrated outstanding predictive value in tumor microenvironment and responses to therapies.


Overview of artificial intelligence and its relation to deep learning.
Flow diagram of inclusions for all three subquestions.
Deep Learning and Multidisciplinary Imaging in Pediatric Surgical Oncology: A Scoping Review

Background Medical images play an important role in diagnosis and treatment of pediatric solid tumors. The field of radiology, pathology, and other image‐based diagnostics are getting increasingly important and advanced. This indicates a need for advanced image processing technology such as Deep Learning (DL). Aim Our review focused on the use of DL in multidisciplinary imaging in pediatric surgical oncology. Methods A search was conducted within three databases (Pubmed, Embase, and Scopus), and 2056 articles were identified. Three separate screenings were performed for each identified subfield. Results In total, we identified 36 articles, divided between radiology (n = 22), pathology (n = 9), and other image‐based diagnostics (n = 5). Four types of tasks were identified in our review: classification, prediction, segmentation, and synthesis. General statements about the studies'’ performance could not be made due to the inhomogeneity of the included studies. To implement DL in pediatric clinical practice, both technical validation and clinical validation are of uttermost importance. Conclusion In conclusion, our review provided an overview of all DL research in the field of pediatric surgical oncology. The more advanced status of DL in adults should be used as guide to move the field of DL in pediatric oncology further, to keep improving the outcomes of children with cancer.


EQ‐VAS/utility scores among US & UK cancer patients/survivors according to severity of financial toxicity.
Impact of Financial Toxicity on the Health‐Related Quality of Life and Financial Well‐Being of Cancer Patients and Survivors: A Comparative Study of the United Kingdom and United States

January 2025

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1 Read

Background This study investigated and compared the impact of financial toxicity (FT) on the health‐related quality of life (HRQoL) and financial well‐being of cancer patients and survivors in the United Kingdom (UK) and United States (US). Methods UK & US participants (n = 600) completed an online questionnaire that consisted of a validated FT instrument (COmprehensive Score for financial Toxicity‐COST), a standardised HRQoL instrument (EQ‐5D‐5L) and questions related to their financial well‐being. Tobit regression models and descriptive statistics plus χ² tests were used to analyse the association between FT and (i) HRQoL whilst controlling for sociodemographic characteristics; and (ii) financial well‐being. Results In the UK, health utilities of participants with no assessed experience of FT, mild FT, and moderate/severe FT were 0.81, 0.66, and 0.41, respectively, compared to 0.88, 0.71, and 0.53 in the US. Among those with moderate/severe FT, US participants had significantly higher health utilities compared to their peers in the UK (Mann Whitney test, p = 0.0369). In a pooled analysis of UK and US and after controlling for sociodemographic and clinical characteristics, mild and moderate/severe FT was negatively associated with health utilities (β coff = −0.13, 95% CI: −0.18, −0.08 and β coff = −0.28, 95% CI: −0.34, −0.21, respectively). Over half (54%) of US participants with FT were in debt with median (IQR) debt at I11,500(23,000),comparedto3211,500 (23,000), compared to 32% in the UK with median (IQR) debt at I 7200 (12,960). US participants with FT were 2.48 times more likely to be in debt than UK participants with FT (OR = 2.48, 95% CI: 1.46–4.21). Conclusions FT is associated with poorer financial well‐being and HRQoL among cancer patients/survivors in the US and UK. The impact of FT on financial well‐being is larger in the US while the impact on HRQoL is worse in the UK. Further studies using prospective data are required to investigate the nature and extent of these relationships.


Improved Predictability of Diagnosis and Prognosis Using Serum‐ and Tissue‐Derived Extracellular Vesicles From Bulk mRNA Sequencing in Pancreatic Ductal Adenocarcinoma

January 2025

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3 Reads

Background Early‐stage pancreatic ductal adenocarcinoma (PDAC) is frequently misdiagnosed, contributing to its high mortality rate. Exosomal microRNAs (miRNAs) have emerged as potential biomarkers for the early detection of PDAC. Aims This study aimed to evaluate the feasibility of using exosomal miRNAs from PDAC tissues and serum as biomarkers for early detection and prognosis. Materials & Methods Exosomes were isolated from healthy individuals and PDAC patients via tissue and serum samples, then identified by analyzing their particle size and protein content. PDAC‐specific exosomal miRNAs were identified using a microRNA array. A large cohort was subsequently recruited to validate these findings. The diagnostic capacity of the identified miRNAs was assessed using the Brier score and area under the curve (AUC). Verified miRNAs were also used to confirm intracellular mRNA change patterns. Results The combination of miR142‐3p, miR148a‐3p, and CA199 showed a higher AUC (0.747) compared to CA199 alone (0.716) in ROC curve analysis. Gene Ontology (GO) annotations revealed that the two‐miRNA panel was associated with multiple oncogenic pathways. Discussion 142‐3p and miR148a‐3p were identified as specific to PDAC and, when combined with CA199, improved diagnostic accuracy. Their involvement in oncogenic pathways underscores their relevance as diagnostic and prognostic biomarkers. Conclusion MiR142‐3p and miR148a‐3p, alongside CA199, show promise as non‐invasive biomarkers for early detection and prognosis of PDAC, improving diagnostic accuracy.


‘Why Don't We Get Counselling?’: Comparing NICE Guidelines for Morphological and Genetic Cancer Risk Diagnoses

January 2025

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4 Reads

Background In the UK's National Health Service (NHS), there is specific psychosocial care offered to people with genetic cancer risk conditions but not morphological cancer risk conditions. As researchers develop new ways to diagnose morphological risk conditions, including precancers and in situ cancers, it is important to consider the psychosocial care that those diagnosed might require. Objectives This study compares the National Institute for Health and Care Excellence's guidelines for BRCA1/2, which are genetic risk conditions, and Barrett's oesophagus (BO), a morphological risk condition. It then theorises reasons for the similarities and differences made visible by this comparative work. Methods The author completed an in‐depth analysis of two sets of NICE guidelines, before carrying out a review of historical and social scientific literature on cancer risk to offer potential explanations for the disparities identified. Results The ‘right not to know’ is protected in the case of BRCA1/2 diagnoses, but not BO. Additionally, specialist counselling is required for people receiving diagnoses of genetic risk but not offered for those diagnosed with morphological risk conditions. The paper offers four possible reasons for these disparities, concluding that they appear to be in large part due to historic genetic exceptionalism, rather than differences in patients' needs. Conclusion There may be a need to consider offering further psychosocial care to people with morphological risk conditions like BO. Lessons might be learnt from the field of genetic counselling.


Distribution of TERTp mutation in different subgroups.
Overall survival of TERT promoter mutation in different subgroup of adult‐type diffuse glioma. (a) In all adult‐type gliomas. (b) In IDH mutant adult‐type diffuse gliomas. (c) In IDH wildtype glioblastomas. (d, e) In histology GBM and molecular GBM. (f) In all Grade 4 adult‐type gliomas including both IDH wildtype and mutant. (g) In IDH mutant Grades 2 and 3 gliomas. (h, i) In IDH mutant grade 2 or grade 3 adult‐type gliomas, respectively. (j) EGFR amplification and TERTp status in IDHmt adult‐type diffuse gliomas. (k) EGFR amplification and TERTp status in GBM. (l) CDKN2A/B Homozygous Deletions and TERTp status in IDHmt adult‐type diffuse gliomas. (m) CDKN2A/B Homozygous Deletions and TERTp status in GBM. IDHmt, IDH mutant. mOS, median OS. GBM, glioblastoma.
Overall survival of TERT promoter mutation in other subtype combinations. (a) In all grade 4 gliomas, including pediatric type. (b) In IDH wildtype glioma with histological grade 2 and 3 appearance. IDHwt, IDH wildtype. mOS, median OS.
Correlation between TERTp mutation and other gene alterations. Odds ratio was used to show correlation between paired genes. Paired genes with p < 0.05 in the pairwise fisher test were indicated in red (co‐occurrence) or blue (exclusivity). Paired genes without significance were indicated in white. Only genes with at least one significant correlation were shown here. To better demonstrate the strength of the correlation, odds ratio values greater than 15 were denoted by 15. IDH‐mt, IDH mutant. IDH‐wt, IDH wildtype. GBM, glioblastoma.
TERTp Mutation and its Prognostic Value in Glioma Patients Under the 2021 WHO Classification: A Real‐World Study

January 2025

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5 Reads

Background The 2021 WHO Classification of Central Nervous System Tumors introduces more molecular markers for glioma reclassification, including TERT promoter (TERTp) mutation as a key feature in glioblastoma diagnosis. Aims Given the changes in the entities included in each subtype under the new classification, this research investigated the distribution, prognostic value, and correlations with other molecular alterations of TERTp mutation in different subgroups under this latest classification. Methods All glioma patients admitted to Peking Union Medical College Hospital for surgical resection or biopsy from 2011 to 2022 were included. Samples were analyzed for TERTp mutation and 59 other gene alterations and chromosome copy number variations. Results A total of 207 patients were included. The occurrence of TERTp mutations varied with percentages of 4.55%, 100%, and 77.92% in astrocytoma, oligodendroglioma, and glioblastoma, respectively. 65% of all adult‐type glioma patients and 42.6% of IDH‐wildtype histology grade 2 or 3 patients were TERTp‐mutant. Survival analysis showed that TERTp mutation was a predictor of better prognosis in IDH‐mutant grade 2 gliomas (median OS (mOS): not reached (NA) (95% CI: NA–NA) vs. 75.9 (95% CI: 55.4–NA) months, HR = 0.077 (95% CI: 0.01–0.64), p = 0.003), while poor OS was associated with all Grade 4 gliomas (mOS: 17.5 (95% CI: 12.6–24.2) vs. 40.5 (95% CI: 24.4–83.8) months, HR = 2.014 (95% CI: 1.17–3.47), p = 0.01) and all IDH‐wildtype histology grade 2 or 3 gliomas (median OS: 12.6 (95% CI: 11–24.2) vs. 83.8 (95% CI: 35.2–NA) months, HR = 3.768 (95% CI: 1.83–7.78), p < 0.001). Moreover, TERTp mutation tended to co‐occur with EGFR, KRAS, and MET in glioblastoma. In the IDH‐mutant subgroup, it tended to co‐occur with CIC and FUBP1 alterations, while being mutually exclusive with ATRX and TP53 alterations. These correlations may further refine prognostic predictions.


Evaluation of differences between patient and control samples. (A,B,C,D,E,F) Comparison of alpha‐diversity indices (Shannon and Chao1) of patient samples and control samples at different study time points. In all box plots: box hinges: 1st and 3rd quartiles; whiskers: hinge to highest/lowest values that are within 1.5*IQR of hinge. (G,H,I) ANOSIM analysis comparing patient and control samples at different time points with respect to their similarity at the phylum level. The green boxplot shows the inter‐group variance, while the red boxplot shows the intra‐group variance of the control cohort and the blue boxplot shows the intra‐group variance of the patient cohort. (J) Comparison of relative abundance of the Leuconostocaceae family taxon in patient samples and control samples at baseline. Significantly different relative abundance (“*” = q < 0.05) was found.
Comparison of significantly differentially abundant species and relative abundances of antimicrobial resistance (AMR) genes between patients and controls at mid‐study. (A) Relative abundances of 35 significantly differentially abundant species between patients and controls are shown. The color code ranges from blue (low relative abundance) to red (high relative abundance). The dendrogram on the left side of the heat map shows the clustering of species based on their relative abundance across samples. (B) AMR gene profiles of patient samples and control samples at mid‐study. The top 20 most abundant AMR genes in terms of relative abundance are shown. All other genes are grouped under “Others.”
Evaluation of the differences in saliva microbiota of patients over time. (A, C) Principal component analysis (PCA) and (B, D) nonmetric multi‐dimensional scaling analysis (NMDS) representing the overall structure of patient samples' microbiota. (E) Sample clustering analysis based on Bray–Curtis distance of the relative taxonomic abundance at the phylum level. (F, G) Microbial taxa with significantly different relative abundances (“**” = q < 0.01) comparing patients at baseline versus at the end of study.
Evaluation of differences between patients with low‐grade mucositis vs high‐grade mucositis over time. (A, B, E, F, I, J) Comparison of alpha‐diversity indices (Shannon and Chao1) of patient subgroups. Upper panels: patients with low‐grade mucositis vs. high‐grade mucositis at baseline. patients with low‐grade mucositis vs. high‐grade mucositis at the end of the study. Lower panels: patients with low‐grade mucositis vs. high‐grade mucositis during follow‐up. (C, G, K) ANOSIM analysis comparing low‐grade mucositis and high‐grade mucositis patients’ samples at different time points with respect to their similarity at the phylum level. The green boxplot shows the inter‐group variance, while the red boxplots show the intra‐group variance of the high‐grade mucositis subgroup and the blue boxplot shows the intra‐group variance of the low‐grade mucositis subgroup. (D, H, L) Principal coordinate analysis (PCoA) plot based on Bray‐Curtis distance visualizing the overall structure of saliva microbiota of low‐grade mucositis and high‐grade mucositis patients at different time points.
(A) Linear discriminant analysis effect size (LEfSe)‐based analysis showing differentially abundant microbial taxa between low‐grade mucositis and high‐grade mucositis subgroups at baseline. (B) Taxonomic abundance heat map based on LEfSe of low‐grade mucositis and high‐grade mucositis subgroups at baseline. The color code ranges from blue (low abundance) to red (high abundance).
Metagenomic Profiling of Oral Microbiome Dynamics During Chemoradiotherapy in Head and Neck Squamous Cell Carcinoma Patients

January 2025

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13 Reads

Background We explored the interaction between the oral microbiome and the development of radiation‐induced mucositis in patients with head and neck squamous cell cancer (HNSCC) undergoing chemoradiotherapy (CRT). We prospectively studied the oral microbiome and compared it to healthy controls. Additionally, we compared patients with low‐grade (LGM) vs. high‐grade mucositis (HGM). Methods Ten HNSCC patients scheduled for CRT were included. Saliva samples were characterized prior to, during, and nine months after CRT using metagenomic sequencing. We similarly characterized samples from seven healthy controls. We assessed alpha and beta diversity and examined abundances at different taxonomic levels between (sub)groups. Results Patients exhibited significantly reduced alpha diversity compared to controls at all times (p ⟨ 0.05). Differential abundance of taxa between patients and controls was observed at baseline. In patients, the relative abundance of Staphylococcus aureus and Escherichia coli increased significantly during CRT. Capnocytophaga spp. was associated with the definitive CRT patients' subgroup. At baseline, two fungal families (Melampsoraceae and Herpotrichiellaceaea) were more abundant in patients who later developed HGM. No differentially abundant taxa were found between LGM vs. HGM during irradiation. Conclusion Our findings support the hypothesis that CRT, as well as HNSCC itself, influences the composition of the oral microbiome. Microbial markers found in patients who later developed HGM should be evaluated using independent cohorts to qualify their specific biomarker potential.


Study flowchart detailing patient identification and inclusion criteria of the landmark analysis. *Categorization of malignancy types was based on the primary site or tissue of the malignant neoplasms only.
Kaplan–Meier survival curve of the 1‐month landmark analysis in all patients according to the quartiles of days' supply of H1‐antihistamines.
Kaplan–Meier survival curves of the 1‐month landmark analysis in patient subgroups: (a) patients with lung malignancies, (b) patients with liver malignancies, and (c) patients with missing diagnosis codes or other malignancies, according to the quartiles of days' supply of H1‐antihistamines.
Concomitant Usage of H1‐Antihistamines and Immune Checkpoint Inhibitors on Cancer Patient Survival

January 2025

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12 Reads

Purpose Recent research (Li et al. 2021) suggests an upregulated expression and activation of H1 receptors on macrophages in the tumor microenvironment, and concomitant H1‐antihistamine use is associated with improved overall survival in patients with lung and skin cancers receiving immunotherapy. Therefore, we retrospectively evaluated the impacts of H1‐antihistamine use in cancer patients during immunotherapy. Methods All patients who had received at least one dose of immune checkpoint inhibitors (ICIs) from July 1, 2014 to October 31, 2019 were identified from Hong Kong's territory‐wide database, with this date defined as the baseline. A 1‐month landmark analysis was conducted with follow–for up to 6 months, including an exposure period of 1 month before and after the baseline date. Patients were grouped according to the types of primary cancer and the percentages of daily H1‐antihistamine usage within the exposure period. The primary outcome was overall survival. Results A total of 1740 (65.1% male, mean age 61.9 years) were included in the landmark analysis, of which 529 (30.4%) and 307 (17.6%) had primary lung and liver malignancies. The multivariable Cox regression model estimated statistically significant improvement in overall survival of intermediate use in patients with primary lung malignancies (adjusted hazard ratio [aHR] 0.223, 95% confidence interval [CI] 0.052–0.958, p = 0.044), but not with primary liver maligancies. Similar frequency‐dependent effects were identified in Kaplan–Meier analysis. Conclusion The benefits of adjunctive use of H1‐antihistamines may be generation‐ and tumor‐dependent. Further clinical and mechanistic studies are required to confirm the findings.


Targeted drug screen identified sensitivity to GSK‐J4 in dexamethasone resistant cell lines, which correlated with CREBBP gene expression levels in cell lines and relapse patient samples. (A) Heterogeneity of patient samples expressing CREBBP (n = 244). Samples overexpressing CREBBP were identified by ordering the samples by their expression and finding the cutoff expression (Rc) in which the Jaccard distance in the log Expression—Sample expression Rank is maximized, providing a bias‐free separation between low and high expressors of the genes. (B) Viability of BCP‐ALL cell lines (n = 11) was assessed by WST‐1 assay after incubation for 48 h with epigenetic regulators (n = 5). EC50 concentrations are shown (μM). Cell viability curves of BCP‐ALL cell lines (n = 11) measured with WST‐1 assay after 48 h treatment with serial dilutions of (C) GSK‐J4 and (D) dexamethasone. Figure shows mean and SD from n = 3 independent experiments conducted in triplicates, from same experiments as data shown in panel (A). (E) CREBBP gene expression is directly proportional to the sensitivity to GSK‐J4 in BCP‐ALL cell lines (n = 11) and (F) inverse proportional to the sensitivity to dexamethasone in BCP‐ALL cell lines (n = 7). Pearson correlation coefficient (r) and p values are shown. (G) Proportion of dead cells in primary ALL samples (n = 10), measured Proportion of dead cells in primary ALL samples treated with 1/10 μM GSK‐J4. After 48 h, ANXA5 and PI staining was detected by flow cytometry. (H) Proportion of dead cells in primary ALL samples (n = 10) from panel (G) where RNAseq data was available. Samples were clustered in RNA CREBBP high and low (≥ and < median 20, 2 Reads Per Kilobase per Million mapped reads, RPKM, respectively), after treatment with 10 μM GSK‐J4 and normalized to untreated control. Median and interquartile range (IQR) are shown. p values were calculated using Mann–Whitney U test. *p ≤ 0.05; ***p ≤ 0.001. Additional information on applied methods and samples is provided in Appendix S1.
Molecular characterization of the implication of GSK‐J4 treatment and the CREB‐CREBBP complex, leading to the dependency of BCL2 and BCL‐xL signaling and synergy with BH3 mimetics. (A) Western blot analysis performed with the indicated antibodies, on lysates of BCP‐ALL cell lines (n = 4) and a primary sample treated for 24 h with vehicle (dimethylsulfoxide; DMSO) or 10 μM GSK‐J4. HSP60 served as the loading control. Dependencies to DMSO (B) or GSK‐J4 (C) were assessed in NALM‐6, 697, and REH cell lines expressing Cas9 and transfected with a CRISPR library [8]. Cells were treated with DMSO or GSK‐J4 (0.3 μM) for 14 days, followed by harvesting and cell count determination. Beta scores were calculated using MAGeCK MLE v0.5.9.5 (Li et al., 2014). Negative beta scores indicate gene dependency, while positive scores suggest enhanced survival. Each dot represents a gene, color‐coded according to the significance of dependency (−log10(p‐value)) using the accompanying scale. Genes with significant dependencies (p < 0.05) are highlighted in green. (D) BH3 profiling of BCP‐ALL cell lines HAL‐01 and 697 exposed (16 h) to GSK‐J4 (1‐5μM) followed by exposure to increasing concentrations of the inhibitor peptides BAD, HRK, MS1 or vehicle control (1 h) before cytochrome C release was measured by flow cytometry. p values were calculated using Mann–Whitney U test; ns: Not significant; *p ≤ 0.05; **p ≤ 0.01. (E) Combination effects on viability of BCP‐ALL cell lines HAL‐01, 697, REH and NALM‐6 were analyzed 48 h after treatment with serial dilutions of single and combined compounds (20 combined concentrations: Venetoclax/navitoclax alone (n = 4), GSK‐J4 alone (n = 3) and all combinations of these). 1:10 dilutions for each compound where applied to high sensitive REH and HAL‐01 cells. Combination effects were determined by HSA reference model (Combenefit software) integrating n = 3 independent experiments. Each data point represents one drug or combination. (F) Schematic representation of how H3K27 demethylase inhibitor GSK‐J4 leads to CREB‐CREBBP downregulation, followed by the induction of cell cycle arrest and apoptosis mediated by Bcl‐2 and Bcl‐XL dependence, leading to the synergy between GSK‐J4 and BH3 mimetics venetoclax and navitoclax. Additional information on applied methods and samples is provided in Appendix S1.
Inhibiting H3K27 Demethylases Downregulates CREB‐CREBBP, Overcoming Resistance in Relapsed Acute Lymphoblastic Leukemia

January 2025

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23 Reads

Background CREB binding protein (CREBBP) is a key epigenetic regulator, altered in a fifth of relapsed cases of acute lymphoblastic leukemia (ALL). Selectively targeting epigenetic signaling may be an effective novel therapeutic approach to overcome drug resistance. Anti‐tumor effects have previously been demonstrated for GSK‐J4, a selective H3K27 histone demethylase inhibitor, in several animal models of cancers. Methods To characterize the effect of GSK‐J4, drug response profiling, CRISPR‐Dropout Screening, BH3 profiling and immunoblotting were carried out in ALL cell lines or patient derived samples. Results Here we provide evidence that GSK‐J4 downregulates cyclic AMP‐responsive element‐binding protein (CREB) and CREBBP in B‐cell precursor‐ALL cell lines and patient samples. High CREBBP expression in BCP‐ALL cell lines correlated with high GSK‐J4 sensitivity and low dexamethasone sensitivity. GSK‐J4 treatment also induced Bcl‐2 and Bcl‐XL dependency and apoptosis. Conclusions This study proposes H3K27 demethylase inhibition as a potential treatment strategy for patients with treatment‐resistant ALL, using CREBBP as a biomarker for drug response and combining GSK‐J4 with venetoclax and navitoclax as synergistic partners.


Role of polycomb repressive complexes (PRC2 and PRC1) in chromatin modification. (a) PRC2 complex activity. PRC2, with its catalytic subunit Ezh2, methylates lysine‐27 residues on histone H3. This methylation marks chromatin for transcriptional repression. (b) PRC1 complex activity. Following PRC2‐mediated methylation, the PRC1 complex, with Bmi‐1 as a core component, catalyzes histone 2A monoubiquitination and remodels the chromatin structure. This further stabilizes chromatin compaction, contributing to gene silencing.
Structural domains of the Bmi‐1 protein. Bmi‐1 protein, containing 326 amino acids, comprises three main regions: The zinc finger motif (C3HC4) located in the finger domain responsible for DNA binding and transcriptional regulation, the central helix‐turn‐helix‐turn‐ helix‐turn (HTHTHT) domain facilitating E3 ubiquitin ligase activation and gene repression, and the carboxyl terminus enriched in proline (P), glutamic acid (E), serine (S), and threonine (T), which is thus known as the PEST sequence that acts as a proteolytic signal leading to protein degradation. Two nuclear localization signals NLS1 and NLS2, located between these regions, are involved in nuclear import of Bmi‐1.
Proposed mechanisms by which Bmi‐1 mediates drug and radio‐resistance in GSCs. (A) Bmi‐1 promotes drug resistance under stress conditions. Both tumor microenvironment‐induced stress and chemotherapy‐induced genotoxicity from temozolomide (TMZ) upregulate the transcription factors HDAC and Sp1, leading to Bmi‐1 activation. Bmi‐1 activation subsequently triggers several downstream effects, including the repression of p16, which contributes to neoplastic transformation and the activation of NF‐kappaB. NF‐kappaB further induces MMP3 gene expression, thus enhancing migration and invasion, and VEGF, promoting angiogenesis and neovascularization. (B) Bmi‐1 mediates radio‐resistance following ionizing radiation (IR) in GSCs. IR activates DNA response machinery, which in turn leads to Bmi‐1 upregulation. This increase in Bmi‐1 expression promotes cellular survival and radio‐resistance in GSCs.
Insights Into the Role of Bmi‐1 Deregulation in Promoting Stemness and Therapy Resistance in Glioblastoma: A Narrative Review

Background Glioblastoma (GBM) is the most common primary brain tumor in adults and has a median survival of less than 15 months. Advancements in the field of epigenetics have expanded our understanding of cancer biology and helped explain the molecular heterogeneity of these tumors. B‐cell‐specific Moloney murine leukemia virus insertion site‐1 (Bmi‐1) is a member of the highly conserved polycomb group (PcG) protein family that acts as a transcriptional repressor of multiple genes, including those that determine cell proliferation and differentiation. We hereby aim to explore the specific involvement of Bmi‐1 in glioma pathogenesis. Methods A comprehensive narrative review was employed using “PubMed”. Articles were screened for relevance specific keywords and medical subject headings (MeSH) terms related to the topic combined with Boolean operators (AND, OR). Keywords and MeSH terms included the following: “glioma”, “polycomb repressive complex 1”, and “Bmi1”. Results In GBMs, several reports have shown that Bmi‐1 is overexpressed and might serve as a prognostic biomarker. We find that Bmi‐1 participates in regulating the gene expression and chromatin structure of several tumor suppressor genes or cell cycle inhibitors. Bmi‐1 has a critical role in modulating the tumor microenvironment to support the plasticity of GBM stem cells.We explore Bmi‐1's involvement in maintaining glioma stem cell (GSC) proliferation and senescence evasion upon regulating the chromatin structure of several tumor suppressor genes, cell cycle inhibitors, or stem cell genes in tumor cells. Additionally, we analyze Bmi‐1's involvement in modulating the DNA repair machinery or activating anti‐apoptotic pathways to confer therapy resistance. Importantly, our research discusses the importance of targeting Bmi‐1 that could be a promising therapeutic target for GBM treatment. Bmi‐1 activates and interacts with NF‐κB to promote angiogenesis and invasion, regulates the INK4a‐ARF locus, and interacts with various microRNAs to influence tumor progression and proliferation. In addition, Bmi‐1 confers radioresistance and chemotherapy by promoting cell senescence evasion and DNA repair. Conclusion Bmi‐1 regulates self‐renewal, proliferation, and differentiation of GBM cells, promoting stemness and therapy resistance. Targeting Bmi‐1 could be a promising novel therapeutic strategy for GBM treatment.


Mutation in CDC42 Gene Set as a Response Biomarker for Immune Checkpoint Inhibitor Therapy

January 2025

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17 Reads

Background Immune checkpoint inhibitors (ICIs) have achieved great success; however, a subset of patients exhibits no response. Consequently, there is a critical need for reliable predictive biomarkers. Our focus is on CDC42, which stimulates multiple signaling pathways promoting tumor growth. We hypothesize that an impaired function of CDC42 may serve as an indicator of a patient's response to ICI therapy. Methods We consider CDC42 and its downstream binding and effector proteins as a gene set, as mutations in these components could lead to defective CDC42 function. To elucidate the biomarker function of mutations within the CDC42 gene set, we curated a comprehensive discovery dataset that included seven ICI treatment cohorts. And we curated two ICI treatment cohorts for validation. We explored the mechanism based on The Cancer Genome Atlas database. We also examined whether combining a CDC42 inhibitor with ICI could enhance ICI's efficacy. Results Mutations in the CDC42 gene set were associated with improved overall survival and progression‐free survival. Furthermore, our analysis of immune response landscapes among different statuses of the CDC42 gene set supports its role as a biomarker. Animal experiments also revealed that the combination of the CDC42 inhibitor (ML141) with anti‐PD‐1 blockade can additively reduce tumor growth. Conclusions Our study suggests that the CDC42 gene set mutations could potentially serve as a novel biomarker for the clinical response to ICI treatment. This finding also provides insights into the potential of combining ICI and CDC42 inhibitor use for more efficient patient treatment.


Journal metrics


2.9 (2023)

Journal Impact Factor™


25%

Acceptance rate


5.5 (2023)

CiteScore™


11 days

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