Senckenberg Society for Nature Research

The use of water as a weapon in highly industrialized areas in the Russo-Ukrainian war has resulted in catastrophic economic and environmental damages. We analyze environmental effects caused by the military destruction of the Kakhovka Dam. We link field, remote sensing, and modeling data to demarcate the disaster’s spatial-temporal scales and outline trends in reestablishment of damaged ecosystems. Although media attention has focused on the immediate impacts of flooding on society, politics, and the economy, our results show that toxic contamination within newly exposed sediments of the former reservoir bed poses a largely overlooked long-term threat to freshwater, estuarine, and marine ecosystems. The continued use of water as a weapon may lead to even greater risks for people and the environment.

Correction for ‘Exploiting the inherent promiscuity of the acyl transferase of the stambomycin polyketide synthase for the mutasynthesis of analogues’ by Li Su et al., Chem. Sci., 2025, https://doi.org/10.1039/d4sc06976e.

Pigment-dispersing factors (PDFs) are neuropeptides that play key roles in controlling the circadian rhythms in various insects, whereas their function remains elusive in other protostomes including tardigrades (water bears). Here we show that the three PDFs of the tardigrade Hypsibius exemplaris are co-localized in two pairs of inner lobe cells in the brain, whereas only one PDF occurs in four additional cerebral and two extracerebral cells. The axons of the inner lobe cells pass through the contralateral brain hemisphere, descend to the ventral nerve cord and terminate in two pairs of potential release sites in the posteriormost trunk ganglion. Using in vitro assays, we demonstrate that all three PDFs and their deorphanized receptor (PDFR) are functional. Widespread localization of PDFR suggests that tardigrade PDFs may act as multifunctional hormones and neuromodulators that control major functions including light detection, neural processing, locomotion, feeding, digestion, osmoregulation, growth, embryonic development and oogenesis/reproduction.

Background Oases are azonal, highly productive, densely vegetated areas within drylands, often converted to agriculture, and characterized by significant biocultural diversity. Despite their importance, comprehensive information on the global distribution and biocultural diversity of oases has been lacking. Methods To address this gap, a detailed bibliographic search and random forest modeling were combined to create a global map of oases, with a focus on Asia and North Africa (ANA). Results In the ANA region, oases cover 1.5% of the dryland area and are populated by 150 million people, with an additional 268 million people living nearby and most likely being dependent on them. Globally, oases contain more than 8,200 vertebrate species, of which 13% are classified as threatened. However, less than 0.5% of their total area is currently under protection, making oases one of the least conserved ecosystems worldwide. These findings highlight the distinct biocultural, ecological, and geopolitical importance of oases, which are increasingly threatened by climate change and direct human impacts. Despite their significance, oases remain undervalued, emphasizing an urgent need for developing adaptative strategies to sustainably manage these pivotal ecosystems.

Close‐kin mark–recapture (CKMR) methods use information on genetic relatedness among individuals to estimate demographic parameters. An individual's genotype can be considered a ‘recapture’ of each of its parent's genotype, and the frequency of kin‐pair matches detected in a population sample can directly inform estimates of abundance. CKMR inference procedures require analysts to define kinship probabilities in functional forms, which inevitably involve simplifying assumptions. Among others, population structure can have a strong influence on how kinship probabilities are formulated. Many terrestrial species are philopatric or face barriers to dispersal, and not accounting for dispersal limitation in kinship probabilities, can create substantial bias if sampling is also spatially structured (e.g. via harvest). We present a spatially explicit formulation of CKMR that corrects for incomplete mixing by incorporating natal dispersal distances and spatial distribution of individuals into the kinship probabilities. We used individual‐based simulations to evaluate the accuracy of abundance estimates obtained with one spatially naïve and two spatially explicit CKMR models across six scenarios with distinct spatial patterns of relative abundance and sampling probability. Estimates of abundance obtained with a CKMR model naïve to spatial structure were negatively biased when sampling was spatially biased. Incorporating patterns of natal dispersal in the kinship probabilities helped address this bias, but estimates were not always accurate depending on the model used and the scenario considered. Incorporating natal dispersal into spatially structured CKMR models can address the bias created by population structure and heterogeneous sampling but will often require additional assumptions and auxiliary data (e.g. relative abundance indices). The models shown here were designed for terrestrial species with continuous patterns of natal dispersal and high year‐to‐year site fidelity but could be extended to other species.

This review explores recent insights into the roles and enzymatic mechanisms of canonical and non-canonical tailoring enzymes in shaping and modifying terpene hydrocarbon scaffolds during bacterial terpene biosynthesis.

The eXchange Unit between Thiolation domains approach and artificial intelligence (AI)‐driven tools like Synthetic Intelligence are transforming nonribosomal peptide synthetase and polyketide synthase engineering, enabling the creation of novel bioactive compounds that address critical challenges like antibiotic resistance and cancer. These innovations expand chemical space and optimize biosynthetic pathways, offering precise and scalable therapeutic solutions. Collaboration across synthetic biology, AI, and clinical research is essential to translating these breakthroughs into next‐generation treatments and revolutionizing drug discovery and patient care.

The polyketide specialized metabolites of bacteria are attractive targets for generating analogues, with the goal of improving their pharmaceutical properties. Here, we aimed to produce C-26 derivatives of the giant anti-cancer stambomycin macrolides using a mutasynthesis approach, as this position has been shown previously to directly impact bioactivity. For this, we leveraged the intrinsically broad specificity of the acyl transferase domain (AT12) of the modular polyketide synthase (PKS), which is responsible for the alkyl branching functionality at this position. Feeding of a panel of synthetic and commercially available dicarboxylic acid ‘mutasynthons’ to an engineered strain of Streptomyces ambofaciens (Sa) deficient in synthesis of the native α-carboxyacyl-CoA extender units, resulted in six new series of stambomycin derivatives as judged by LC-HRMS and NMR. Notably, the highest product yields were observed for substrates which were only poorly accepted when AT12 was transplanted into a different PKS module, suggesting a critical role for domain context in the overall functioning of PKS proteins. We also demonstrate the superiority of this mutasynthesis approach – both in terms of absolute titers and yields relative to the parental compounds – in comparison to the alternative precursor-directed strategy in which monoacid building blocks are supplied to the wild type strain. We further identify a malonyl-CoA synthetase, MatB_Sa, with specificity distinct from previously described promiscuous enzymes, making it a useful addition to a mutasynthesis toolbox for generating atypical, CoA activated extender units. Finally, we show that two of the obtained (deoxy)-butyl-stambomycins exhibit antibacterial and antiproliferative activities similar to the parental stambomycins, while an unexpected butyl-demethyl congener is less potent. Overall, this works confirms the interest of biosynthetic pathways which combine a dedicated route to extender unit synthesis and a broad specificity AT domain for producing bioactive derivatives of fully-elaborated complex polyketides.

Globally, hundreds of thousands of rangers patrol protected areas every day. The data they collect have immense potential for monitoring biodiversity and threats to it. Technologies like SMART (Spatial Monitoring and Reporting Tool), which facilitate the management of ranger‐collected data, have enhanced this potential. However, based on our experience across diverse use cases and geographies, we have found that ranger‐based monitoring is often implemented without a clear plan for how the data will inform management and without critical evaluation of whether the data are reliable enough to meet specific monitoring goals. Here we distill six key lessons and present a decision framework to guide funders, governments, protected area managers, and NGOs toward more effective use of ranger‐based monitoring for protected area management and suggest when alternative monitoring approaches may add value. Essential considerations include the welfare and motivation of rangers, biases in patrol coverage and detectability, the capacity to analyze data, and the buy‐in of those tasked with using the data to inform management decisions. When implemented well, ranger‐based monitoring can help improve conservation outcomes through evaluating management interventions, more efficient deployment of limited law enforcement budgets to optimize the deterrence of illegal activities, and basic ecological monitoring.

Mollusca is the second most species-rich animal phylum, but the pathways of early molluscan evolution have long been controversial1, 2, 3, 4–5. Modern faunas retain only a fraction of the past forms in this hyperdiverse and long-lived group. Recent analyses6, 7–8 have consistently recovered a fundamental split into two sister clades, Conchifera (including gastropods, bivalves and cephalopods) and Aculifera⁹, comprising Polyplacophora (‘chitons’) and Aplacophora. Molluscan evolution in toto is characterized by plasticity in body-plan characters¹⁰, but historically aculiferans have been interpreted as more conservative10,11. The few completely preserved aculiferan or aculiferan-like fossils from the early Palaeozoic12, 13, 14, 15, 16, 17, 18–19 have been largely regarded as transitional forms that inform questions of character polarity between the extant polyplacophoran and aplacophoran body forms20,21. The history of early aculiferans, and the morphological and ecological range that they occupied, remain inadequately sampled. Here we describe two new three-dimensionally preserved aculiferan species from the Silurian Herefordshire Lagerstätte22,23, which substantially extend the morphological and ecological range of the clade. Phylogenetic analyses indicate positions within a complex nexus of taxa and suggest reversals in the states of fundamental characters such as the presence of valves and the nature of the foot. In contrast to previous hypotheses of morphological conservatism, evolution in early aculiferans generated a profusion of unusual forms comparable to the diversification of other crown-group molluscs.

Closely related species often conserve similar niches despite interacting negatively. We suggest that close relatives may interact positively via ecosystem feedbacks: leaf litter produced or exposed in a closely related neighbourhood (low phylogenetic isolation) may decompose more quickly, leading to more rapid nutrient recycling. We studied decomposition of leaf litter of oaks Quercus petraea across 8 and 14 months, reciprocally transplanting leaf litters between low and high phylogenetic isolation to distinguish between effects mediated by leaf litter quality and by decomposition environment. We found that, by affecting litter quality, phylogenetic isolation reduced decomposition across 14 months (loss of litter mass and C). Moreover, by affecting litter quality and decomposition environment, phylogenetic isolation reduced microbial biomass and extensively altered relationships between C and N losses and abundances/diversities of different soil organisms across 8 and 14 months. Phylogenetic isolation was to a large extant driven by percentage of gymnosperms, explaining the decomposition‐environment mediated effects. Such environment‐mediated effects reflected decreasing soil humidity and pH with phylogenetic isolation, while litter‐quality mediated effects reflected decreasing leaf phytophagy or increasing leaf phenolics. Tree‐species richness, in contrast, did not explain effects of phylogenetic isolation, and had little effect overall. To conclude, coexistence of oaks with distant relatives partly impedes recycling of leaf litter and re‐organizes the trajectories of this recycling. In contrast, oaks coexisting with close relatives may profit from a positive ecosystem feedback through increased nutrient recycling, possibly contributing to the conservation of the oak's niches. We suggest that such a positive ecosystem feedback among close relatives might exist in other late successional tree species.

Many endotherms from diverse taxonomic groups can respond to environmental changes through torpor, that is, by greatly reducing their energy expenditure for up to 24 hours (daily torpor) or longer (hibernation). We currently have a poor understanding of how torpor evolved across endotherms and its associations with physiological traits and ecological factors. To fill this gap, we thoroughly examine the evolutionary patterns of torpor and its links with 21 key physiological and ecological variables across 1338 extant endotherms. We find that daily torpor and hibernation are parts of an evolutionary torpor continuum, and that there are several, albeit weak, associations between torpor and species' physiological or environmental characteristics. Furthermore, we show that early endotherm ancestors likely did not hibernate and that this trait evolved multiple times in independent lineages. Overall, our results suggest that the remarkable variation in torpor patterns across extant endotherms cannot solely be attributed to environmental niches, but partly arises from independent gains of daily torpor and hibernation in various clades. Read the free Plain Language Summary for this article on the Journal blog.

Deep-time (=pre-Quaternary) maar lakes and certain other, hydrologically deep volcanogenic lakes, are often excellent Konservat-Lagerstätten representing unique windows into past biota and ecosystems. Many deposits from such lakes contain animal and plant remains in extraordinary preservation, often with soft tissues or fine morphological and anatomical details preserved. Such Lagerstätten have the potential to provide in-depth information on a variety of organisms, which is important for understanding their biology and ecology, their evolution and palaeobiogeography, but also for elucidating entire ecosystems with their numerous biotic and abiotic interactions. The formation of such Lagerstätten is intimately linked to volcanic processes, amongst which phreatomagmatic explosions that formed maar-diatreme volcanoes are probably the most important, but also other volcanic processes can lead to the formation of deep volcanogenic lakes (e.g. in certain calderas). Maar lakes and other volcanogenic Konservat-Lagerstätten occur in a large number of volcanically active regions worldwide, although older deposits are often difficult to access as they are more likely to be eroded or covered by younger deposits. The accessibility of many of the better-known localities is often connected to the mining of natural resources, ranging from diamonds, to volcanic rocks such as basalts to the lacustrine sediments that may have filled volcanic craters, including diatomites and ‘oil-shales’. Most or even all of the maar and other volcanogenic lakes presented here in greater detail, can be considered as important geoheritage sites. Although currently some of these deposits have at least some kind of legal protection as monuments of natural heritage, others remain in danger of being exploited commercially for natural resources and hence, ultimately destroyed. Moreover, many scientific questions related to these ancient lakes and their biota covered here in more detail, as well as those related to lakes only briefly mentioned in passing, have not been posed, let alone answered. This makes maar lakes and other volcanogenic lakes important resources for present-day and future research. The present contribution should be seen as a global call to scientists to find further localities that represent similar volcanogenic lacustrine settings, as they may be the source of vital and surprising new information about the plants, animals, and environments of the past. Examples of pre-Quaternary maar and other volcanogenic lakes that are presented here in greater detail include the following localities: Paleocene : Menat (France); Eocene : Messel, Eckfeld (Germany), Mahenge (Tanzania); Oligocene : Enspel, Rott, Hammerunterwiesenthal, Baruth, Kleinsaubernitz (Germany); Miocene : Foulden Maar, Hindon Maar Complex (New Zealand), Randeck Maar, Hirnkopf-Maar, Höwenegg, Öhningen (Germany); Pliocene : Ruppach-Goldhausen (Germany), Camp dels Ninots (Spain).

Two new species of the genus Amauropelma Raven, Stumkat & Gray 2001 are described from caves located in the Vang Vieng Karst (Laos, Vientiane Province): A. thamcon spec. nov. (male, female) and A. khanensis spec. nov. Both species represent the first cave-dwelling Amauropelma species known from Laos.

The massive increase in the amount of plastid genome data have allowed researchers to address a variety of evolutionary questions within a wide range of plant groups. While plastome structure is generally conserved, some angiosperm lineages exhibit structural changes. Such is the case of the megadiverse order Asterales, where rearrangements in plastome structure have been documented. This study investigates the possibility of recovering plastid loci from off-target reads obtained through hybrid enrichment techniques. Our sampling includes 63 species from the eleven currently recognized families in Asterales derived from previously published studies. We assembled and annotated complete and partial plastomes using custom pipelines and estimate phylogenomic relationships. We retrieved plastid information from 60 of the 63 sampled species including a complete plastome from Tithonia tubaeformis (Asteraceae), circular partial (with gaps) plastomes from seven species, and non-circular partial plastomes from other 52 species. We focused on the small single-copy region because it could be recovered for over 29 species. Within the small single-copy region, we assessed intron losses and presence of putative pseudogenes. Comparative genomics revealed a relocated fragment of ~ 6500 bp in two Campanulaceae lineages (i. e. subfamily Lobelioideae and Pseudonemacladus oppositifolium), involving the genes rbcL, atpB, atpE, trnM-CAU, and trnV-UAC. Obtained phylogenetic hypotheses were congruent across the applied methods and consistent with previously published results. Our study demonstrates the feasibility of recovering plastid information, both complete and partial, from off-target hybrid enrichment data and provides insights on the structural plastome changes that have occurred throughout the evolution of the order Asterales.

The Grube Messel is an important Fossillagerstätte in Germany and has a high importance because of the excellently preserved specimens, especially in terms of insects. So far no Orthoptera from the Eocene of Grube Messel have been described. To change this, here we describe two new genera and species of Tetrigidae: Messeltettix cryptoantennatus gen. et sp. nov. and Archaeoarmatus messelensis gen. et sp. nov. We make suggestions on the systematic position of these species and discuss their meaning for our understanding of the evolution of this interesting family of grasshoppers.

Background Biomphalaria glabrata acts as the intermediate host of schistosomes that causes human schistosomiasis. Symbiotic bacteria, Xenorhabdus and Photorhabdus associated with Steinernema and Heterorhabditis, produce secondary metabolites with several biological activities. Controlling B. glabrata is a potential strategy to limit the transmission of schistosomiasis. The aims of this study were to identify Xenorhabdus and Photorhabdus bacteria based on recA sequencing and evaluate their molluscicidal activity against B. glabrata snail. Results A total of 31 bacterial isolates belonging to Xenorhabdus (n = 19) and Photorhabdus (n = 12) (X. ehlersii, X. stockiae, X. indica, X. griffinae, P. luminescens, P. akhurstii, and P. laumondii subsp. laumondii were molecularly identified based on recA sequencing. Five isolates of bacterial extracts showed potential molluscicide, with 100% snail mortality. P. laumondii subsp. laumondii (bALN19.5_TH) showed the highest effectiveness with lethal concentration (LC) values of 54.52 µg/mL and 89.58 µg/mL for LC50 and LC90, respectively. Histopathological changes of the snail were observed in the head–foot region, which showed ruptures of the epithelium covering the foot and deformation of the muscle fiber. A hemocyte of the treated snails was observed in the digestive tubules of the digestive glands. The hermaphrodite glands of treated snails showed a reduction in the number of spermatozoa, degeneration of oocytes, and deformation and destruction in the hermaphrodite gland. In addition, liquid chromatography–tandem mass spectrometry (LC–MS/MS) of three symbiotic bacteria contained compounds such as GameXPeptide, Xenofuranone, and Rhabdopeptide. Conclusions Five bacterial extracts showed good activity against B. glabrata, especially P. laumondii subsp. laumondii and X. stockiae, which produced virulent secondary metabolites resulting in the death of the snails. They also caused histopathological alterations in the foot, digestive glands, and hermaphrodite glands of the snails. This study suggests that extracts from these bacteria show promise as molluscicides for the control of B. glabrata. Graphical abstract