Royal Belgian Institute of Natural Sciences

Paleoparasitological studies have made important contributions to our understanding of the past epidemiology of parasites, infection in past populations and lifestyle in the past. In some cases, these ancient parasites can also provide evidence for long distance travel or migration of people in the past. Three sediment samples from a 15th–16th c. CE latrine from the Spanish nation house in Bruges, Belgium were analysed for preserved helminth eggs using microscopy. Bruges was a major trading centre in medieval Europe, thus it was home to a large merchant population with extensive trading networks. Paleoparasitological analysis revealed a preserved parasite egg from Schistosoma mansoni, which causes intestinal schistosomiasis. Roundworm, whipworm, liver fluke and Taenia tapeworm eggs were also found in the latrine which is consistent with parasites previously found in the local population in the medieval period. These new data provide direct evidence for the movement of S. mansoni outside of its endemic area. Today the vast majority of S. mansoni infections occur in Sub-Saharan Africa, with additional endemic areas in the Arabian peninsula and South America. The introduction of S. mansoni into South America is proposed to have occurred relatively recently in human history, as the result of forced movement of people from Africa to the Americas with the Atlantic slave trade. Thus, this infection may have occurred in a merchant who acquired the parasite during trade voyages to Africa or in an individual living in Africa who migrated to Bruges.

Background Among minute-sized and wingless arthropods, astigmatid mites stand out for their diverse range of symbiotic associations (parasitic, neutral and mutualistic), with both invertebrate and vertebrate hosts. When inhabiting discontinuous and ephemeral environments, astigmatid mites adapt their life cycle to produce a phoretic heteromorphic nymph. When feeding resources are depleted, phoretic nymphs disperse to new habitats through phoresy, attaching to a larger animal which transports them to new locations. This dispersal strategy is crucial for accessing patchy resources, otherwise beyond the reach of these minute arthropods. In Astigmata, the phoretic nymph is highly specialized for dispersal, equipped with an attachment organ and lacking a mouth and pharynx. Despite the common occurrence of phoretic associations in modern mites, their evolutionary origins remain poorly understood. Among Astigmata, the family Schizoglyphidae represents an early derivative lineage with phoretic tritonymphs; however, our knowledge of this family is limited to a single observation. Results Here, we report the oldest biotic association of arthropods fossilised in amber (~130 Ma, Lebanon): an alate termite with 16 phoretic deutonymphs of Schizoglyphidae (Plesioglyphus lebanotermi gen. et sp. n.). The mites are primarily attached to the membranes of the host’s hindwings, using their attachment organs, pretarsal claws and tarsal setae. Additionally, we report new modern phoretic tritonymphs of this same family, on one of the earliest lineages of termites. These data collectively indicate that schizoglyphid-termite associations represent the oldest continuous mite-host associations. Notably, schizoglyphid mouthparts retain a distinct mouth and pharynx, absent in modern Astigmata. Conclusion The discovery of Schizoglyphidae mites in Lebanese amber represents the oldest known continuous association between acariform mites and their hosts. This finding demonstrates the long-term evolutionary significance of phoresy in Astigmata, evidencing a relationship sustained for over 130 Ma. It indicates that these early mites lived inside termite nests as inquilines and used alate termites for dispersal. This ancient association offers key insights into the coevolution of both mites and termites, highlighting a potential for the future discoveries of similar mites. This fossil —a stem-group Astigmata— is important for the accurate calibration of acariform mite phylogenies, advancing our understanding of these mites evolutionary history.

In addition to the type species, Binkhorstia ubaghsii, which is fairly common in the upper part of the Nekum Member (Maastricht Formation) in the wider vicinity of Maastricht (the Netherlands) and Binkhorstia euglypha, which appears to be restricted to the overlying Meerssen Member of the same formation (uppermost Maastrichtian), a third member, B. desaegheri nov. sp., is recorded from the upper middle Santonian of the Campine area in northeast Belgium. The history of Binkhorstia is convoluted, serving as a prime example of how attempts to unravel the higher-level taxonomic position of late Mesozoic crabs may prove difficult. Over time, the genus has been referred to various families or subfamilies, either podotreme or putative eubrachyuran; here the new family Binkhorstiidae is placed in the superfamily Retroplumoidea. Binkhorstiids appear to have been a relatively short-lived endemic group that fell victim to Cretaceous-Paleogene (K/Pg) boundary perturbations.

Three species of cecidomyiid midges (Diptera: Cecidomyiidae) cause significant yield losses on wheat in Europe: Sitodiplosis mosellana (Géhin), Contarinia tritici (Kirby) and Haplodiplosis marginata (von Roser). Eggs and young larvae may be parasitised by a complex of hymenopteran parasitoids belonging to the Pteromalidae and Platygastridae families which contributes to natural pest control. We have developed molecular tools for detecting and identifying seven parasitoid species previously encountered in Belgium inside individual wheat midge larvae. Barcode DNA sequences from COI, 18S and 28S genes were obtained from the midges and parasitoid species. Each of the three genes allowed all the species to be distinguished although 18S was the only one displaying a barcoding gap, both between parasitoids and midges, and at the species level. Based on the 18S gene, we developed a TaqMan assay to assess parasitism in midge larvae, regardless of the midge and parasitoid species. Next, two group-specific PCR primer pairs were generated, allowing the separate amplification of midge DNA or parasitoid DNA in parasitised individuals and subsequent identification by Sanger sequencing. Finally, species-specific primers were designed to identify six parasitoid species by simple PCR amplification. These tools were successfully applied to assess the parasitism rate of S. mosellana larvae in seven Belgian fields.

DNA collections are a valuable type of Natural Science collection, enabling the validation of past research, serving as a source for new genomic studies and supporting ex situ conservation. The DiSSCo Flanders DNA collection working group, aiming to advance and "unlock" their DNA collections, identified the need for: 1) actively sharing best practices regarding the management of DNA collections; and 2) providing guidance on how to bring theory into practice. By combining best practice examples from within the working group with available literature and brainstorming ideas, the working group co-created two outputs, referred to as: the "Challenges" and the "Key". The Challenges are a list of obstacles to DNA collection management, which shape the structure of the linked Key and can also be used to spark discussion amongst stakeholders. The Key is a tool that guides users through the maturation process of their DNA collection in a standardised way. It stimulates holistic growth, breaks down the needed work into manageable steps and helps to decide priorities during the process. Furthermore, the Key facilitates communication with both internal stakeholders and external DNA collection managers. The Key distinguishes itself from other self-assessment tools in several ways: it includes (re)investigation of the collection’s purpose and context; it is specialised for DNA collections; it delivers concrete goals linked to relevant information and shared experience; and it is inclusive, targeting all Natural Science DNA collections, regardless of their context or size.

Optical turbidity and acoustic sensors have been widely used in laboratory experiments and field studies to investigate suspended particulate matter concentration over the last four decades. Both methods face a serious challenge as laboratory and in‐situ calibrations are usually required. Furthermore, in coastal and estuarine environments, the coexistence of mud and sand often results in multimodal particle size distributions, amplifying erroneous measurements. This paper proposes a new approach of combining a pair of optical turbidity‐acoustic sensors to estimate the total concentration and sediment composition of a mud/sand mixture in an efficient way without an extensive calibration. More specifically, we first carried out a set of 54 bimodal size regime experiments to derive empirical functions of optical‐acoustic signals, concentrations, and mud/sand fractions. The functionalities of these relationships were then tested and validated using more complex multimodal size regime experiments over 30 optical‐acoustic pairs of 5 wavelengths (420, 532, 620, 700, 852 nm) and six frequencies (0.5, 1, 2, 4, 6, 8 MHz). In the range of our data, without prior knowledge of particle size distribution, combinations between optical wavelengths 620–700 nm and acoustic frequencies 4–6 MHz predict mud/sand fraction and total concentration with the variation <10% for the former and <15% for the later. The results also suggest that acoustic‐acoustic signals could be combined to produce meaningful information regarding concentration and mud/sand fraction, while no useful knowledge could be extracted from a combination of optical‐optical pairs. This approach therefore enables the robust estimation of suspended sediment concentration and composition, which is particularly practical in cases where calibration data is insufficient.

Eight isolated mammal molars were discovered in lower Oligocene deposits of the Bugti Hills, Pakistan (Paali Nala, DB-C2; lower Chitarwata Formation). Because of their unusual morphology, these molars have long remained enigmatic. Extensive comparisons with fossil eutherian and metatherian mammals and the recent description of new paroxyclaenids (Mammalia, Cimolesta) from the lower Eocene (Ypresian) of Europe have highlighted the plausible affinities of these teeth from the Oligocene of Pakistan and suggest a referral to Paroxyclaenidae. The dental morphology of this taxon is singular among Paroxyclaenidae, and as such it allows us to propose here a new species and a new genus: Welcom-moides gurki. The occurrence of a paroxyclaenid in the Oligo-cene of Pakistan remains somewhat unexpected inasmuch as these mammals have so far been known only from the Eocene of Europe. At c. 4.2 kg, W. gurki is the largest paroxyclaenid ever discovered, and is assigned to the subfamily Merialinae, which became extinct in Europe around the Ypresian-Lutetian transition, long before the occurrence of this new taxon from Pakistan. Welcommoides has a suite of unusual characters compared with merialines, suggesting that this South Asian lineage had diverged for some time from its European Ypresian counterparts. Such a hypothesis is supported by the fau-nal similarities between European and Indian subcontinent faunas during the Ypresian. Moreover, our discovery strengthens support for the hypothesis that low latitudes of South Asia were a tropical refugium, at least during the first steps of the global climatic deterioration started at the Eocene-Oligocene transition.

Parrots produce stunning plumage colors through unique pigments called psittacofulvins. However, the mechanism underlying their ability to generate a spectrum of vibrant yellows, reds, and greens remains enigmatic. We uncover a unifying chemical basis for a wide range of parrot plumage colors, which result from the selective deposition of red aldehyde- and yellow carboxyl-containing psittacofulvin molecules in developing feathers. Through genetic mapping, biochemical assays, and single-cell genomics, we identified a critical player in this process, the aldehyde dehydrogenase ALDH3A2 , which oxidizes aldehyde psittacofulvins into carboxyl forms in late-differentiating keratinocytes during feather development. The simplicity of the underlying molecular mechanism, in which a single enzyme influences the balance of red and yellow pigments, offers an explanation for the exceptional evolutionary lability of parrot coloration.

UnambiguousPinaceae taxa are described from the Late Jurassic onwards. This fossil record does not, however, match the molecular estimates of deep divergence within Pinaceae. In recent years, new anatomical observations and revisions have reassigned several species of Schizolepis Braun to the emended genus Schizolepidopsis Doweld, 2001 Emend. Domogatskaya Et Herman . This genus is currently regarded as an early representative of Pinaceae, notably sharing bisporangiate scales, winged seeds, and a more or less constricted cone with scales arranged helically around the axis. This would strongly push the earliest Pinaceae to the early Mesozoic or even the latest Paleozoic. Here, we describe an ovulate cone from the Lower Jurassic of Belgium. Despite its partial preservation, the use of micro-CT allowed the reconstruction of its morphology in details. This reconstruction highlights several characters (ovulate cone with helically arranged scales, constrained, bilobed and bisporangial scales with probable winged seeds) diagnostic of the genus Schizolepidopsis , and constituting a new species, which we name Schizolepidopsis gerriennei sp. nov. This description emphasizes several anatomical characters previously rarely noted for this genus. This ovulate cone represents the first occurrence of this genus in the Early Jurassic of Western Europe, which further completes the picture of its distribution and diversity and supports a much deeper origin of Pinaceae that usually conceived.

Rationale Micrometeorites are extraterrestrial particles smaller than ~2 mm in diameter, most of which melted during atmospheric entry and crystallised or quenched to form ‘cosmic spherules’. Their parentage among meteorite groups can be inferred from triple‐oxygen isotope compositions, for example, by secondary ion mass spectrometry (SIMS). This method uses sample efficiently, preserving spherules for other investigations. While SIMS precisions are improving steadily, application requires assumptions about instrumental mass fractionation, which is controlled by sample chemistry and mineralogy (matrix effects). Methods We have developed a generic SIMS method using sensitive high‐mass resolution ion micro probe‐stable isotope (SHRIMP‐SI) that can be applied to finely crystalline igneous textures as in cosmic spherules. We correct for oxygen isotope matrix effects using the bulk chemistry of samples obtained by laser ablation inductively coupled plasma mass spectrometry (LA‐ICP‐MS) and model bulk chemical compositions as three‐component mixtures of olivine, basaltic glass and Fe‐oxide (magnetite), finding a unique matrix correction for each target. Results Our first results for cosmic spherules from East Antarctica compare favourably with established micrometeorite groups defined by precise and accurate but consumptive bulk oxygen isotope methods. The Fe‐oxide content of each spherule is the main control on magnitude of oxygen isotope ratio bias, with effects on δ ¹⁸ O up to ~6‰. Our main peak in compositions closely coincides with so‐called ‘Group 1’ objects identified by consumptive methods. Conclusions The magnitude of SIMS matrix effects we find is similar to the previous intraspherule variations, which are now the limiting factor in understanding their compositions. The matrix effect for each spherule should be assessed quantitatively and individually, especially addressing Fe‐oxide content. We expect micrometeorite triple‐oxygen isotope compositions obtained by SIMS to converge on the main clusters (Groups 1 to 4) after correction firstly for magnetite content and secondarily for other phases (e.g., basaltic glass) in each target.

Natural history collections are invaluable reference collections. Digitizing these collections is a transformative process that improves the accessibility, preservation, and exploitation of specimens and associated data in the long term. Arthropods make up the majority of zoological collections. However, arthropods are small, have detailed color textures and share small, complex and shiny structures, which poses a challenge to conventional digitization methods. Sphaeroptica is a multi-images viewer that uses a sphere of oriented images. It allows the visualization of insects including their tiniest features, the positioning of landmarks, and the extraction of 3D coordinates for measuring linear distances or for use in geometric morphometrics analysis. The quantitative comparisons show that the measures obtained with Sphaeroptica are similar to the measurements derived from 3D μCT models with an average difference inferior to 1%, while featuring the high resolution of color stacked pictures with all details like setae, chaetae, scales, and other small and/or complex structures. Shaeroptica was developed for the digitization of small arthropods but it can be used with any sphere of aligned images resulting from the digitization of objects or specimens with complex surface and shining, black, or translucent texture which cannot easily be digitized using structured light scanner or Structure-from-Motion (SfM) photogrammetry.

Sheep was one of the first domesticated animals in Neolithic West Eurasia. The zooarchaeological record suggests that domestication first took place in Southwest Asia, although much remains unresolved about the precise location(s) and timing(s) of earliest domestication, or the post-domestication history of sheep. Here, we present 24 new partial sheep paleogenomes, including a 13,000-year-old Epipaleolithic Central Anatolian wild sheep, as well as 14 domestic sheep from Neolithic Anatolia, two from Neolithic Iran, two from Neolithic Iberia, three from Neolithic France, and one each from Late Neolithic/Bronze Age Baltic and South Russia, in addition to five present-day Central Anatolian Mouflons and two present-day Cyprian Mouflons. We find that Neolithic European, as well as domestic sheep breeds, are genetically closer to the Anatolian Epipaleolithic sheep and the present-day Anatolian and Cyprian Mouflon than to the Iranian Mouflon. This supports a Central Anatolian source for domestication, presenting strong evidence for a domestication event in SW Asia outside the Fertile Crescent, although we cannot rule out multiple domestication events also within the Neolithic Fertile Crescent. We further find evidence for multiple admixture and replacement events, including one that parallels the Pontic Steppe-related ancestry expansion in Europe, as well as a post-Bronze Age event that appears to have further spread Asia-related alleles across global sheep breeds. Our findings mark the dynamism of past domestic sheep populations in their potential for dispersal and admixture, sometimes being paralleled by their shepherds and in other cases not.

The production of species checklists is fundamental to setting baseline knowledge of biodiversity across the world and they are invaluable for global conservation efforts. The main objective of this study is to provide an up-to-date extensive checklist of the ants of the Democratic Republic of Congo (DRC), the largest country in sub-Saharan Africa, based on available literature to serve as a foundation for future research and ant faunistic developments. We gathered the literature available to us, most of it compiled from the Global Ant Biodiversity Informatics (GABI) Project and treated the data to province level when possible. We also offer insight into who, when and where contributions have emerged to the current knowledge of the ants of the DRC and each of its 26 provinces. The current list is restricted to valid species and subspecies, discarding morphospecies and some misidentified taxa. The list comprises eight subfamilies, 64 genera and 736 species, the highest species diversity for a country located within the Afrotropical realm.

The COST EU-PoTaRCh Action establishes a network focused on the past, present, and future significance, production, and use of major forest by-products in Europe and beyond. The Action centers around forest by-products—primarily potash, tar, resin, and charcoal (PoTaRCh), along with plant extracts—which have been produced and utilized for over 100,000 years due to their unique chemical, biological, and therapeutic properties. The primary goal of the Action is to demonstrate the importance of these products for the socio-economic development of European countries and beyond, as well as their impact on biodiversity and the natural environment. The Action's objectives are organized into five Working Groups (WGs), each aligned with specific areas of interest: heritage, chemical characterization, archaeology, environmental history, and future perspectives of PoTaRCh materials. A key aspect of the Action is its support for stakeholders outside the scientific community who possess knowledge of PoTaRCh products through their use in industries such as production, education, and the promotion of forests' natural and cultural heritage. In doing so, the Action brings together stakeholders with diverse activity profiles, including museums, state forests, the forestry industry, associations dedicated to preserving traditions, and the tourism sector. The EU-PoTaRCh Action adheres to the three key principles of COST’s inclusiveness policy: participation of inclusiveness target countries, gender balance, and the involvement of young researchers, including in leadership positions.

We here provide a detailed description of the vertebral morphology of the African arboreal viperid snakes of the genus Atheris. Vertebrae of three different species of the genus, i.e., Atheris desaixi, Atheris hispida, and Atheris katangensis, were investigated via the aid of μCT (micro‐computed tomography) scanning. We describe several vertebrae from different regions of the vertebral column for all three species, starting from the atlas‐axis complex to the caudal tip, in order to demonstrate important differences regarding the intracolumnar variation. Comparison of these three species shows an overall similar general morphology of the trunk vertebrae among the Atheris species. We extensively compare Atheris with other known viperids. As the sole arboreal genus of Viperinae the prehensile nature of the tail of Atheris is reflected in its caudal vertebral morphology, which is characterized by a high number of caudal vertebrae but also robust and anteroventrally oriented pleurapophyses as a skeletal adaptation, linked with the myology of the tail, to an arboreal lifestyle. We anticipate that the extensive figuring of these viperid specimens will also aid identifications in paleontology.

To save saltmarshes and their valuable ecosystem services from sea level rise, it is crucial to understand their natural ability to gain elevation by sediment accretion. In that context, a widely accepted paradigm is that dense vegetation favors sediment accretion and hence saltmarsh resilience to sea level rise. Here, however, we reveal how dense vegetation can inhibit sediment accretion on saltmarsh platforms. Using a process‐based modeling approach to simulate biogeomorphic development of typical saltmarsh landscapes, we identify two key mechanisms by which vegetation hinders sediment transport from tidal channels toward saltmarsh interiors. First, vegetation concentrates tidal flow and sediment transport inside channels, reducing sediment supply to platforms. Second, vegetation enhances sediment deposition near channels, limiting sediment availability for platform interiors. Our findings suggest that the resilience of saltmarshes to sea level rise may be more limited than previously thought.

Ergasilidae is a family of globally distributed copepods parasitizing freshwater fishes. Despite their widespread occurrence, their phylogeographic patterns are poorly understood, specifically in the African Great Lakes. Here, we aim to provide an update on the distribution of Ergasilus kandti, a copepod species infecting Tylochromis polylepis, an endemic cichlid fish species in Lake Tanganyika, and the phylogenetic relationship of African ergasilids. We present the first record of E. kandti parasitizing the gills of T. polylepis in Lake Tanganyika proper, identified through light microscopy and, for the first time for any ergasilid, confocal laser scanning microscopy. We suggest that this technique adds spatial context to characters that are hardly visible while using light microscopy. Phylogenetic analyses based on ribosomal DNA fragments suggest two monophyletic groups of African ergasilids. However, the phylogenetic relationships of Ergasilus remain unresolved, possibly because of the insufficient resolution of these widely used phylogenetic markers and low taxonomic coverage. A comparison of ergasilid mitochondrial genomes highlights traits found in other parasite lineages including genome shrinkage and low evolutionary rates of the cox1 gene. This study presents the most extensive molecular characterization of any ergasilid species to date.

Adequate knowledge is essential for responsible inland fisheries. However, many inland fisheries lack monitoring, and therefore, decision‐making for fisheries management is not reliable. In this paper, we used data from surveys and literature to estimate the life‐history and growth parameters of 16 exploited fish stocks in the Ugandan part of Lake Edward and Lake George (East Africa). The estimated parameters are pivotal indicators of fish stock status, particularly in data‐poor fisheries. The estimated parameters included maximum length (Lmax) and mean length (Lmean) as indicators of size structure in experimental and commercial catches, coefficients of length–weight relationships, length at 50% maturity (Lm50), fecundity, von Bertalanffy parameters, total mortality (Z), and natural mortality (M). These parameters were estimated using empirical formulae, statistical methods, and analyses of length frequencies. Only two stocks of semutundu Bagrus docmak exhibited significant and increasing trends in Lmax (Lake Edward) and Lmean (Lake George). The estimates for the remaining parameters were consistent with those in FishBase and other literature resources, either for the same species or related species. This consistency indicates their reliability for application in decision‐making and further assessments. Some parameters showed evidence of unsustainable fishing. For example, estimates of Lm50 for four of the assessed stocks belonging to two species (Nile tilapia Oreochromis niloticus and marbled lungfish Protopterus aethiopicus) were lower than baseline estimates in the studied waterbodies. Furthermore, the Lmean in catches for all the stocks were less than the optimum lengths (Lopt), which maximize catches with a minimal impact on biomass and size structure. No significant changes in Lmean, length–frequency distributions, and size at maturity could be attributed to the management changes implemented in 2018, probably because it is too early to observe changes in these parameters. However, there are positive signs attributable to the changes in management as shown by a high proportion of mature individuals in commercial catches for most of the stocks for which the proportion was calculated, and an increase in Lmean and Lmax for some stocks, such as B. docmak, in commercial or experimental catches. New estimates from this study will enhance decision‐making and further assessments of fisheries. Routine monitoring is recommended to update and improve the estimates.

The intentional combination of two or more marine activities with the purpose of sharing space, infrastructure, resources and/or operations, referred to as multi-use, is gaining attention as a means to reduce the spatial footprint of human activities but possibly also its ecological footprint. In this study, the Spatial Cumulative Assessment of Impact Risk for Management (SCAIRM) method was adapted and applied to assess whether multi-use can reduce the ecological footprint in terms of the cumulative impacts on the marine ecosystem, by integrating multiple offshore activities in different configurations as compared to these activities separated in space, referred to as single-use. These configurations combine renewable energy, aquaculture, nature restoration and tourism activities, in different combinations. For the sake of this multi-use assessment these activities were subdivided into actions, their allocation in space and time represented in scenarios (e.g. single-use versus multi-use) which were then evaluated in terms of their ecological footprint (i.e. Impact Risk). The main finding is that the calculated Impact Risk in multi-use is often lower than that in single-use and in any case never higher. This study also shows that there is still much to be gained in terms of further reduction in Impact Risk through an optimization of the multi-use design by comparing the scenario based on actual pilots deemed more realistic (i.e. co-existence with limited synergies) with a hypothetical optimal scenario (i.e. multi-functional).