Fig 4 - uploaded by Marcelo Zoccoler
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METROID interfaces. a Block of code in jupyter notebook format to import and run METROID to process two AP videos. b Main window of METROID graphical user interface version after an AP video had been processed
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Background:
In cell biology, increasing focus has been directed to fast events at subcellular space with the advent of fluorescent probes. As an example, voltage sensitive dyes (VSD) have been used to measure membrane potentials. Yet, even the most recently developed genetically encoded voltage sensors have demanded exhausting signal averaging thr...
Contexts in source publication
Context 1
... present the two possible interfaces supplied for METROID in Fig. 4. In Fig. 4a, we show how METROID can be executed on two AP videos with a few lines of Python code. Briefly, METROID path is appended to the interpreter's search path, then METROID is imported, mandatory input variables are set and finally the main METROID function (also called metroid) is called with the mandatory inputs and preceded ...
Context 2
... present the two possible interfaces supplied for METROID in Fig. 4. In Fig. 4a, we show how METROID can be executed on two AP videos with a few lines of Python code. Briefly, METROID path is appended to the interpreter's search path, then METROID is imported, mandatory input variables are set and finally the main METROID function (also called metroid) is called with the mandatory inputs and preceded by output ...
Context 3
... we show how METROID can be executed on two AP videos with a few lines of Python code. Briefly, METROID path is appended to the interpreter's search path, then METROID is imported, mandatory input variables are set and finally the main METROID function (also called metroid) is called with the mandatory inputs and preceded by output variables. In Fig. 4b, we show METROID with its graphical interface after a video has been processed. The video can be played in the left panel and each ROI filtered signal over time can be displayed as a graphic in a new window by doubleclicking on the respective ROI. Right panel allows the user to provide input variables and all outputs can be saved in an ...
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