Kinetic constants of the interaction of scFvs 10FG2 and LR with C. sculpturatus toxins.

Kinetic constants of the interaction of scFvs 10FG2 and LR with C. sculpturatus toxins.

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A fundamental issue of the characterization of single-chain variable fragments (scFvs), capable of neutralizing scorpion toxins, is their cross-neutralizing ability. This aspect is very important in Mexico because all scorpions dangerous to humans belong to the Centruroides genus, where toxin sequences show high identity. Among toxin-neutralizing a...

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... 10FG2 showed similar affinities for both toxins with KDs of 1.1 nM and 1.8 nM for CsEM1a and CsEd, respectively. In the case of LR, greater differences were observed with KDs of 1.29 nM and 0.61 nM for CsEM1a and CsEd, respectively (Table 1) The kinetic constants of the molecular interactions obtained from the sensorgrams generated at different concentrations ( Figure 2a) were used to calculate the corresponding affinities. scFv 10FG2 showed similar affinities for both toxins with KDs of 1.1 nM and 1.8 nM for CsEM1a and CsEd, respectively. ...
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... 10FG2 showed similar affinities for both toxins with KDs of 1.1 nM and 1.8 nM for CsEM1a and CsEd, respectively. In the case of LR, greater differences were observed with KDs of 1.29 nM and 0.61 nM for CsEM1a and CsEd, respectively (Table 1). Molecular interactions were performed at 25 • C with a flow rate of 50 µL min −1 . ...
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... results of these analyses are shown in Tables S1 and S2. Figure 3a shows minimal differences in the superposition of the structural models of the toxins with the two scFvs, where some of the most important contacts at the interface scFv-toxin are highlighted (Figure 3b-e). The interactions at the interface of toxin Cn2 with both scFvs were used as a control (Tables S1 and S2) since this toxin is recognized with greater affinity by both scFvs [11]. During the MD of the different complexes, the structural similarities shared between CsEM1a and CsEd toxins with Cn2 toxin were reflected in the results, as they showed that the main contacts are kept (Tables S1 and S2). ...
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... interactions at the interface of toxin Cn2 with both scFvs were used as a control (Tables S1 and S2) since this toxin is recognized with greater affinity by both scFvs [11]. During the MD of the different complexes, the structural similarities shared between CsEM1a and CsEd toxins with Cn2 toxin were reflected in the results, as they showed that the main contacts are kept (Tables S1 and S2). These observations explain the ability of scFvs LR and 10FG2 of recognizing this group of toxins. ...
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... the case of dissociation, from the koff values, we were able to determine that the retention times (T R ) show greater differences in the average binding time of the toxin-antibody complex. For example, scFv LR interaction with CsEd toxin remained for almost 71 min (Table 1), while for CsEM1a toxin, it was only 21 min. We have reported that, for a good neutralization of this epitope present in Cn2 and Css2 toxins, retention times must be longer than 250 min [12]. ...
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... results of the MD show that the wide cross-reactivity of scFvs 10FG2 and LR with the different toxins studied in this work is explained mainly through the conservation of interactions with the three toxins (Cn2, CsEM1a, and CsEd). The similarity of the sequences in the epitopes of the toxins favors the level of recognition shown by the scFvs 10FG2 and LR (Figures 1 and 3a and Supplementary Materials Tables S1 and S2). However, the differences in the toxin sequences influence the affinity levels of the scFvs (Table 1). ...
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... similarity of the sequences in the epitopes of the toxins favors the level of recognition shown by the scFvs 10FG2 and LR (Figures 1 and 3a and Supplementary Materials Tables S1 and S2). However, the differences in the toxin sequences influence the affinity levels of the scFvs (Table 1). The affinity of the scFv LR for the CsEd toxin is greater than that of the CsEM1a toxin, while in the case of the scFv 10FG2, the affinity is greater for CsEM1a toxin. ...
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... Figure 3b,c it can be seen that Y9 of CsEM1a establishes a variety of interactions, such as hydrogen bonds with Y60 backbone of scFv 10FG2, hydrophobic contacts with Y59 and Y60, an aromatic-aromatic interactions with Y59, as well as a cation-Pi interaction with K65. This is in contrast to S9 of the CsEd toxin (Table S1). When analyzing the area of the structure where Y9 is located, it is observed that the temperature B factors are lower for these three residues S8, Y9, and T10 (Table S3). ...
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... these samples, one of every 5000 frames was taken and submitted to the PIC (Protein Interactions Calculator) software using default values [25] and to PISA software [26] for analyses of the interface between the scFvs and each of the toxins evaluated. Table S1: Comparison of interactions between scFv 10FG2 and the indicated toxins, Table S2: Comparison of interactions between scFv LR and the indicated toxins, Table S3: Temperature B factors of the first 20 residues of toxins CsEM1a and CsEd and their difference during interaction with scFv 10FG2. ...

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... Based on these observations, mix-type assays were carried out [16], where 1 LD 50 of fresh C. huichol venom was mixed with scFvs LR and 10FG2 at a molar ratio of 1:10:10 (venom: scFv LR: scFv 10FG2). To estimate the amount of scFv to be used, in this experiment it was assumed that the proportion of toxins corresponds to 10% of the venom (average value with respect to the venoms studied so far [16,18,20]). ...
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