Fig 1 - Taxonomic refinement of Xanthomonas arboricola

A, Classification of orthologous gene families into core genome and accessory genome within different sets of Xanthomonas spp. using Roary (Park and Andam 2019). B, Pan-genome analyses for all 132 Xanthomonas arboricola sequences retrieved from NCBI GenBank. C, Pan-genome analyses for the same X. arboricola strains in comparison with the type strains of Xanthomonas spp. D, Pan-genome analyses for 96 genuine X. arboricola strains. E, Pangenome analyses for the 36 mislabeled X. arboricola strains along with the type strains of all Xanthomonas species. The plots were generated using Roary based on gene presence-absence matrix, showing the distribution of genes present in a genome, and visualized with Phandango. Shaded segments represent gene presence, and white segments represent gene absence. The pan-genome generated beginning from the core genome on the left plot and shifting into the accessory genome (shell and cloud genomes) with increasing gene sequence discrepancy.

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Taxonomic refinement of Xanthomonas arboricola - Scientific Figure on ResearchGate. Available from: https://www.researchgate.net/figure/A-Classification-of-orthologous-gene-families-into-core-genome-and-accessory-genome_fig1_358781801 [accessed 18 Jan 2025]

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Fig. 1. A, Classification of orthologous gene families into core genome and accessory genome within different sets of Xanthomonas spp. using Roary (Park and Andam 2019). B, Pan-genome analyses for all 132 Xanthomonas arboricola sequences retrieved from NCBI GenBank. C, Pan-genome analyses for the same X. arboricola strains in comparison with the type strains of Xanthomonas spp. D, Pan-genome analyses for 96 genuine X. arboricola strains. E, Pangenome analyses for the 36 mislabeled X. arboricola strains along with the type strains of all Xanthomonas species. The plots were generated using Roary based on gene presence-absence matrix, showing the distribution of genes present in a genome, and visualized with Phandango. Shaded segments represent gene presence, and white segments represent gene absence. The pan-genome generated beginning from the core genome on the left plot and shifting into the accessory genome (shell and cloud genomes) with increasing gene sequence discrepancy.

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<a href="https://www.researchgate.net/figure/A-Classification-of-orthologous-gene-families-into-core-genome-and-accessory-genome_fig1_358781801"><img src="https://www.researchgate.net/profile/Ebrahim-Osdaghi/publication/358781801/figure/fig1/AS:11431281080445429@1661314738522/A-Classification-of-orthologous-gene-families-into-core-genome-and-accessory-genome.png" alt="A, Classification of orthologous gene families into core genome and accessory genome within different sets of Xanthomonas spp. using Roary (Park and Andam 2019). B, Pan-genome analyses for all 132 Xanthomonas arboricola sequences retrieved from NCBI GenBank. C, Pan-genome analyses for the same X. arboricola strains in comparison with the type strains of Xanthomonas spp. D, Pan-genome analyses for 96 genuine X. arboricola strains. E, Pangenome analyses for the 36 mislabeled X. arboricola strains along with the type strains of all Xanthomonas species. The plots were generated using Roary based on gene presence-absence matrix, showing the distribution of genes present in a genome, and visualized with Phandango. Shaded segments represent gene presence, and white segments represent gene absence. The pan-genome generated beginning from the core genome on the left plot and shifting into the accessory genome (shell and cloud genomes) with increasing gene sequence discrepancy."/></a>