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Publications (2)0 Total impact

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    Conference Proceeding: Stability effects of finite difference methods on a mathematical tumor growth model
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    ABSTRACT: Numerical methods used for solving differential equations should be chosen with great care. Not considering numerical aspects such as stability, consistency and wellposed-ness results in erroneous solutions, which in turn will result in incorrect judgments. One of the most important aspects that should be considered is the stability of the numerical method. In this paper, we discuss stability problems of some of the so far proposed finite difference methods for solving the anisotropic diffusion equation, a second order parabolic equation. This equation is used in a variety of applications in physics and image processing. Here, we focus on its usage in formulating brain tumor growth using the Diffusion Weighted Imaging (DWI) technique. Our study shows that the commonly used chain rule method to discretize the diffusion equation is unstable. We propose a new 3D stable discretization method with its stability conditions to solve the diffusion equation. The new method uses directional discretization and forward differences. We also extend standard discretization method to 3D. The theoretical and practical comparisons of the three methods both on synthetic and real patient data show that while chain rule model is always unstable and standard discretization is unstable in theory, our proposed directional discretization is stable both in theory and practice.
    Computer Vision and Pattern Recognition Workshops (CVPRW), 2010 IEEE Computer Society Conference on; 07/2010
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    Conference Proceeding: An interactive graph cut method for brain tumor segmentation
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    ABSTRACT: Tumor segmentation from MRI data is an important but time consuming task performed manually by medical experts. Automating this process is challenging due to the high diversity in appearance of tumor tissue among different patients and, in many cases, similarity between tumor and normal tissue. We propose a semi-automatic interactive brain tumor segmentation system that incorporates 2D interactive and 3D automatic tools with the ability to adjust operator control. The provided methods are based on an energy that incorporates region statistics computed on available MRI modalities and the usual regularization term. The energy is efficiently minimized on-line using graph cut. Experiments with radiation oncologists testing the semi-automatic tool vs. a manual tool show that the proposed system improves both segmentation time and repeatability.
    Applications of Computer Vision (WACV), 2009 Workshop on; 01/2010