Qing Ye

Carnegie Mellon University, Pittsburgh, PA, USA

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Publications (13)0 Total impact

  • Article: Cellular and Functional Imaging of Cardiac Transplant Rejection.
    Yijen L Wu, Qing Ye, Chien Ho
    [show abstract] [hide abstract]
    ABSTRACT: Heart transplantation is now an established treatment for patients suffering from end-stage heart diseases. With the advances in immunosuppressive treatment, the survival rate for transplant patients has improved greatly. However, allograft rejection, both acute and chronic, after heart transplantation is still a limitation leading to morbidity and mortality. The current clinical gold standard for screening rejection is endomyocardial biopsy (EMB), which is not only invasive, but also error-prone, due to the limited sample size and the site location of sampling. It would be highly desirable to have reliable and noninvasive alternatives for EMB in monitoring cardiac allograft rejection. The objective of this review is to highlight how cardiovascular imaging can contribute to noninvasively detecting and to evaluating both acute and chronic allograft rejection after heart transplantation, in particular, cardiovascular MRI (CMRI); and how CMRI can assess both immune cell infiltration at the rejecting organ, and the cardiac dysfunctions resulting from allograft rejection.
    Current Cardiovascular Imaging Reports 02/2011; 4(1):50-62.
  • Conference Proceeding: First-pass perfusion cardiac MRI using the Partially Separable Functions model with generalized support
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    ABSTRACT: Dynamic imaging methods based on the Partially Separable Functions (PSF) model have been used to perform ungated cardiac MRI, and the critical parameter determining the quality of the reconstructed images is the order, L, of the PSF model. This work extends previous methods by increasing L in the cardiac region to improve the ability of the PSF model to represent complex spatiotemporal signals. The resulting higher order PSF model is fit to sparse (k, t)-space data using spatial-spectral support, spatial-eigenbasis support, and spectral sparsity constraints. This new method is demonstrated in the context of 2D first-pass perfusion MRI in a healthy rat heart.
    Engineering in Medicine and Biology Society (EMBC), 2010 Annual International Conference of the IEEE; 10/2010
  • Conference Proceeding: High-resolution cardiac MRI using partially separable functions and weighted spatial smoothness regularization
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    ABSTRACT: Imaging of cardiac morphology and functions in high spatiotemporal resolution using MRI is a challenging problem due to limited imaging speed and the inherent tradeoff between spatial resolution, temporal resolution, and signal-to-noise ratio (SNR). The partially separable function (PSF) model has been shown to achieve high spatiotemporal resolution but can lead to noisy reconstructions. This paper proposes a method to improve the SNR and reduce artifacts in PSF-based reconstructions through the use of anatomical constraints. These anatomical constraints are obtained from a high-SNR image of composite (k, t)-space data (summed along the time axis) and used to regularize the PSF reconstruction. The method has been evaluated on experimental data of rat hearts to achieve 390 εm in-plane resolution and 15 ms temporal resolution.
    Engineering in Medicine and Biology Society (EMBC), 2010 Annual International Conference of the IEEE; 10/2010
  • Article: First-pass perfusion cardiac MRI using the Partially Separable Functions model with generalized support.
    [show abstract] [hide abstract]
    ABSTRACT: Dynamic imaging methods based on the Partially Separable Functions (PSF) model have been used to perform ungated cardiac MRI, and the critical parameter determining the quality of the reconstructed images is the order, L, of the PSF model. This work extends previous methods by increasing L in the cardiac region to improve the ability of the PSF model to represent complex spatiotemporal signals. The resulting higher order PSF model is fit to sparse (k, t)-space data using spatial-spectral support, spatial-eigenbasis support, and spectral sparsity constraints. This new method is demonstrated in the context of 2D first-pass perfusion MRI in a healthy rat heart.
    Conference proceedings: ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference 01/2010; 2010:2833-6.
  • Article: High-resolution cardiac MRI using partially separable functions and weighted spatial smoothness regularization.
    [show abstract] [hide abstract]
    ABSTRACT: Imaging of cardiac morphology and functions in high spatiotemporal resolution using MRI is a challenging problem due to limited imaging speed and the inherent tradeoff between spatial resolution, temporal resolution, and signal-to-noise ratio (SNR). The partially separable function (PSF) model has been shown to achieve high spatiotemporal resolution but can lead to noisy reconstructions. This paper proposes a method to improve the SNR and reduce artifacts in PSF-based reconstructions through the use of anatomical constraints. These anatomical constraints are obtained from a high-SNR image of composite (k, t)-space data (summed along the time axis) and used to regularize the PSF reconstruction. The method has been evaluated on experimental data of rat hearts to achieve 390 εm in-plane resolution and 15 ms temporal resolution.
    Conference proceedings: ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference 01/2010; 2010:871-4.
  • Conference Proceeding: Real-time cardiac MRI using prior spatial-spectral information
    [show abstract] [hide abstract]
    ABSTRACT: Cardiac MRI performed while the patient is breathing is typically achieved using non-real-time techniques such as ECG triggering with respiratory gating; however, modern dynamic imaging techniques are beginning to enable this type of imaging in real-time. One of these dynamic imaging techniques is based on forming a partially separable function (PSF) model of the data, but the model fitting process is known to be sensitive even when truncated SVD regularization is used. As a result, physiologically meaningless artifacts can appear in the dynamic images when the total number of measurements is limited. To address this issue, the dynamic imaging problem is formulated as a generalized Tikhonov regularization problem with the PSF model as a component of the forward data model, and a penalty function is used to introduce spatial-spectral prior information. This new method both reduces data acquisition requirements and improves stability relative to the original PSF based method when applied to cardiac MRI.
    Engineering in Medicine and Biology Society, 2009. EMBC 2009. Annual International Conference of the IEEE; 10/2009
  • Article: Real-time cardiac MRI using prior spatial-spectral information.
    [show abstract] [hide abstract]
    ABSTRACT: Cardiac MRI performed while the patient is breathing is typically achieved using non-real-time techniques such as ECG triggering with respiratory gating; however, modern dynamic imaging techniques are beginning to enable this type of imaging in real-time. One of these dynamic imaging techniques is based on forming a Partially Separable Function (PSF) model of the data, but the model fitting process is known to be sensitive even when truncated SVD regularization is used. As a result, physiologically meaningless artifacts can appear in the dynamic images when the total number of measurements is limited. To address this issue, the dynamic imaging problem is formulated as a generalized Tikhonov regularization problem with the PSF model as a component of the forward data model, and a penalty function is used to introduce spatial-spectral prior information. This new method both reduces data acquisition requirements and improves stability relative to the original PSF based method when applied to cardiac MRI.
    Conference proceedings: ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference 01/2009; 2009:4383-6.
  • Article: Real-time free-breathing strategy for tracking labeled cells with in-vivo vardiac MRI
    Journal of Cardiovascular Magnetic Resonance. 01/2009;
  • Article: Non-invasive monitoring allograft rejection by simultaneous cellular and functional cardiac MRI
    Journal of Cardiovascular Magnetic Resonance. 01/2009;
  • Conference Proceeding: Real-time cardiac MRI without triggering, gating, or breath holding
    [show abstract] [hide abstract]
    ABSTRACT: State-of-the-art cardiac MRI can perform real-time 2D scans without cardiac triggering during a single breath hold; however, real-time cardiac MRI in rats is difficult due to the high heart rate (330 bpm) and presence of respiratory motion. These challenges are overcome by using a dynamic imaging method based on Partially Separable Function (PSF) theory with an acceleration factor of 256. This paper demonstrates that this method can be used in the study of transplanted rat hearts for both anatomical and perfusion applications. The study was carried out with a 200 μm in-plane resolution with a 17.2 msec temporal resolution, and the results show improved spatial resolution (2x) and reduced acquisition time (3x) relative to Electrocardiogram (ECG) triggered, respiratory gated cine imaging.
    Engineering in Medicine and Biology Society, 2008. EMBS 2008. 30th Annual International Conference of the IEEE; 09/2008
  • Article: Real-time cardiac MRI without triggering, gating, or breath holding.
    [show abstract] [hide abstract]
    ABSTRACT: State-of-the-art cardiac MRI can perform real-time 2D scans without cardiac triggering during a single breath hold; however, real-time cardiac MRI in rats is difficult due to the high heart rate (330 bpm) and presence of respiratory motion. These challenges are overcome by using a dynamic imaging method based on Partially Separable Function (PSF) theory with an acceleration factor of 256. This paper demonstrates that this method can be used in the study of transplanted rat hearts for both anatomical and perfusion applications. The study was carried out with a 200 microm in-plane resolution with a 17.2 msec temporal resolution, and the results show improved spatial resolution (2x) and reduced acquisition time (3x) relative to Electrocardiogram (ECG) triggered, respiratory gated cine imaging.
    Conference proceedings: ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference 02/2008; 2008:3381-4.
  • Source
    Conference Proceeding: Kidney segmentation in MRI sequences using temporal dynamics
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    ABSTRACT: We propose an energy-based image segmentation algorithm that uses the correlation information among pixels in the same image as well as the temporal correlation across the images in the sequence. We focus on MRI sequences that are extremely difficult to segment on the basis of single images. Our method detects motion-free objects whose intensities change across the image sequence. We introduce an energy functional that exploits the difference in the dynamics of the temporal signals associated with distinct pixels. We develop a level set approach and a region-growing algorithm to minimize the energy functional. Our tests in a transplantation study show that we successfully extract automatically the kidneys and their structures in magnetic resonance (MR) image sequences.
    Biomedical Imaging, 2002. Proceedings. 2002 IEEE International Symposium on; 02/2002
  • Conference Proceeding: Kidney segmentation in MRI sequences using temporal dynamics.
    Proceedings of the 2002 IEEE International Symposium on Biomedical Imaging, Ritz-Carlton Hotel, Washington, DC, USA, 7-10 June 2002; 01/2002

Institutions

  • 2002–2011
    • Carnegie Mellon University
      • • Department of Biological Sciences
      • • Department of Electrical & Computer Engineering
      Pittsburgh, PA, USA
  • 2008–2010
    • University of Illinois, Urbana-Champaign
      • Department of Electrical and Computer Engineering
      Urbana, IL, USA