Y K Shin

The University of Tokyo, Edo, Tōkyō, Japan

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Publications (3)6.2 Total impact

  • Source
    A. Hiraishi · Y.K. Shin · J. Sugiyama
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    ABSTRACT: Bacterial quinones were analysed by two-dimensional thin-layer chromatography with ready-made, multi-phase silica gel plates which allowed good separation of complicated quinone mixtures. A combination of this method and silver-ion-modified thin-layer chromatography made it possible to identify partially hydrogenated quinones.
    Letters in Applied Microbiology 06/2008; 14(4):170 - 173. DOI:10.1111/j.1472-765X.1992.tb00676.x · 1.66 Impact Factor
  • Source
    A Hiraishi · Y K Shin · J Sugiyama
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    ABSTRACT: The taxonomic position of a misclassified strain, Zoogloea remigera IAM 12670T (= ATCC 25925T = P. R. Dugan 115T), was reevaluated. A phylogenetic analysis based on 16S ribosomal rDNA sequences revealed that this organism was located in the beta subclass of the class Proteobacteria with members of the genus Telluria as its closest relatives. On the basis of phenotypic and phylogenetic information, we propose that this organism should be reclassified in a new taxon with the name Duganella zoogloeoides gen. nov., sp. nov.
    International journal of systematic bacteriology 11/1997; 47(4):1249-52. DOI:10.1099/00207713-47-4-1249 · 2.27 Impact Factor
  • Source
    Y K Shin · A Hiraishi · J Sugiyama
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    ABSTRACT: Phylogenetic relationships among strains of Zoogloea and related taxa were determined by 16S rDNA sequencing and genomic DNA hybridization techniques. The 16S rRNA gene was amplified by the polymerase chain reaction with a pair of eubacterial consensus primers and sequenced directly by using an automated fluorescent DNA sequencer. Sequence comparisons and distance matrix tree analysis revealed that Zoogloea ramigera IAM 12136 (= N. C. Dondero 106, type strain) and Zoogloea sp. ATCC 19324 formed a lineage with Rhodocyclus purpureus in the beta subclass of Proteobacteria. Z. ramigera IAM 12670 (= P. R. Dugan 115) was shown to belong to another cluster with Alcaligenes eutrophus and Pseudomonas cepacia in the beta subclass. In contrast, Z. ramigera IAM 12669 (= K. Crabtree I-16-M) proved to be a member of the alpha subclass of the Proteobacteria, closely related to Agrobacterium tumefaciens. Genomic DNA hybridization studies also showed that there is genetic diversity among the strains currently designated Z. ramigera, but typical Zoogloea strains, characterized by their production of rhodoquinones, are highly related to each other and can be regarded as a single species. On the basis of the molecular data, together with the early phenotypic and chemotaxonomic information, we have emended the generic description of Zoogloea.
    International journal of systematic bacteriology 11/1993; 43(4):826-31. DOI:10.1099/00207713-43-4-826 · 2.27 Impact Factor

Publication Stats

55 Citations
6.20 Total Impact Points

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  • 1993–2008
    • The University of Tokyo
      • Institute of Molecular and Cellular Biosciences
      Edo, Tōkyō, Japan