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ABSTRACT: We investigate the time evolution of an initial step profile separating a
bare substrate region from the rest of the compressively strained adsorbate
layer near a commensurate to incommensurate transition. The rate of profile
evolution as a function of the mismatch, coverage and the strength of the
substrate potential are determined by Brownian molecular dynamics simulations.
We find that the results are qualitatively similar to those observed for the
Pb/Si(111) system. The anomalously fast time evolution and sharpness of the
non-equilibrium profile can be understood through the domain wall creation at
the boundary and its subsequent diffusion into the interior of the adsorbate
layer.
04/2012;
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ABSTRACT: Thin heteroepitaxial overlayers have been proposed as templates to generate stable, self-organized nanostructures at large length scales, with a variety of important technological applications. However, modeling strain-driven self-organization is a formidable challenge due to different length scales involved. In this Letter, we present a method for predicting the patterning of ultrathin films on micron length scales with atomic resolution. We make quantitative predictions for the type of superstructures (stripes, honey-comb, triangular) and length scale of pattern formation of two metal-metal systems, Cu on Ru(0001) and Cu on Pd(111). Our findings are in excellent agreement with previous experiments and call for future experimental investigations of such systems.
Physical Review Letters 01/2012; 35(81). · 7.37 Impact Factor
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ABSTRACT: We study the structural correlations and the nonlinear response to a driving force of a two-dimensional phase-field-crystal model with random pinning. The model provides an effective continuous description of lattice systems in the presence of disordered external pinning centers, allowing for both elastic and plastic deformations. We find that the phase-field crystal with disorder assumes an amorphous glassy ground state, with only short-ranged positional and orientational correlations, even in the limit of weak disorder. Under increasing driving force, the pinned amorphous-glass phase evolves into a moving plastic-flow phase and then, finally, a moving smectic phase. The transverse response of the moving smectic phase shows a vanishing transverse critical force for increasing system sizes.
Physical Review E 09/2011; 84(3 Pt 1):031102. · 2.26 Impact Factor
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ABSTRACT: We consider the diffusion of brownian particles in one-dimensional periodic potentials as a test bench for the recently proposed stochastic path integral hyperdynamics (PIHD) scheme [Chen and Horing, J. Chem. Phys. 126, 224103 (2007)]. First, we consider the case where PIHD is used to enhance the transition rate of activated rare events. To this end, we study the diffusion of a single brownian particle moving in a spatially periodic potential in the high-friction limit at low temperature. We demonstrate that the boost factor as compared to straight molecular dynamics (MD) has nontrivial behavior as a function of the bias force. Instead of growing monotonically with the bias, the boost attains an optimal maximum value due to increased error in the finite path sampling induced by the bias. We also observe that the PIHD method can be sensitive to the choice of numerical integration algorithm. As the second case, we consider parallel resampling of multiple bias force values in the case of a brownian particle in a periodic potential subject to an external ac driving force. We confirm that there is no stochastic resonance in this system. However, while the PIHD method allows one to obtain data for multiple values of the ac bias, the boost with respect to MD remains modest due to the simplicity of the equation of motion in this case.
Physical Review E 08/2011; 84(2 Pt 2):026703. · 2.26 Impact Factor
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ABSTRACT: Surface diffusion[1] or transition between stable (or metastable) states presents well-known computational difficulties, particularly when the
dynamical bottlenecks separating the initial and final (stable or metastable) states are not known. Conventional methods for
studying rare event activations are based on transition state theory[2–4].The application of this approach requires prior knowledge of the mechanism or pathway for the activation process. For multidimensional
systems, it is a challenging problem to determine the transition state numerically without assuming any particular configurations
[5, 6].Various innovations have been put forward to improve or go beyond the transition state theory. Examples are the accelerated
dynamics approach[7] and the transition path approach[8–10].In reference [11], we have proposed a novel approach to the calculation of the rate for activated processes based on the path integral solution
of Langevin equation. In this paper, we pursue further the idea proposed there and fully establish the minimal path approximation.
According to the path integral formulation of the Langevin equation, the probability for an arbitrary path connecting the
initial and the final configurations is determined by a positive-definite “action” functional. It is shown that the paths
having the minimal action dominate over all others for low temperatures. Taking advantage of this fact, the expectation value
of a physical observable is computed as the weighted average of its values along the minimal paths. The minimal paths are
found through integrating an activation equation and a deactivation equation (both second order differential equations). This
minimal path approach does not require prior knowledge of the “transition states” nor that of the stable/metastable states.
Instead, through sampling of intermediate states and integrations along the minimal activation/deactivation paths, both can
be found by a numerical effort on the level of Monte-Carlo sampling in the phase space. It is important to note that not only
is the prior knowledge of the transition state unnecessary, the implementation of the minimal path method also avoids the
usual approximations involved in the transition state theory, which becomes increasingly inaccurate in the limit of low frictional
damping.
06/2011: pages 285-293;
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ABSTRACT: The nonlinear response and sliding friction behavior of a phase-field crystal model for driven adsorbed atomic layers is determined numerically. The model describes the layer as a continuous density field coupled to the pinning potential of the substrate and under an external driving force. Dynamical equations which take into account both thermal fluctuations and inertial effects are used for numerical simulations of commensurate and incommensurate layers. At low temperatures, the velocity response of an initially commensurate layer shows hysteresis with dynamical melting and freezing transitions at different critical forces. The main features of the sliding friction behavior are similar to the results obtained previously from molecular dynamics simulations of particle models. However, the dynamical transitions correspond to nucleations of stripes rather than closed domains.
Journal of Physics Conference Series 09/2010; 246(1):012024.
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ABSTRACT: We study the velocity dependence of the frictional force of the tip of an atomic force microscope as it is dragged across a surface, taking into account memory effects and thermal fluctuations. Memory effects are described by a coupling of the tip to low frequency excitation modes of the surface in addition to the coupling to the periodic corrugation potential. We find that when the excitation mode frequency is comparable to the characteristic frequency corresponding to the motion of the tip across the surface, the velocity dependence of the frictional force is non monotonic, displaying a velocity range where the frictional force can decrease with increasing velocity. These results provide theoretical support for the interpretation of recent experiments which find a frictional force that decreases with velocity on surfaces covered with a monolayer. Comment: 4 pages, 4 figures, to appear in Tribol. Lett.
03/2010;
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ABSTRACT: We study the strain relaxation mechanisms of Cu on Pd(111) up to the monolayer regime using two different computational methodologies, basin-hopping global optimization and energy minimization with a repulsive bias potential. Our numerical results are consistent with experimentally observed layer-by-layer growth mode. However, we find that the structure of the Cu layer is not fully pseudomorphic even at low coverages. Instead, the Cu adsorbates forms fcc and hcp stacking domains, separated by partial misfit dislocations. We also estimate the minimum energy path and energy barriers for transitions from the ideal epitaxial state to the fcc-hcp domain pattern. Comment: 4 pages, 4 figures
02/2010;
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ABSTRACT: We study the nonlinear driven response and sliding friction behavior of the phase-field-crystal (PFC) model with pinning including both thermal fluctuations and inertial effects. The model provides a continuous description of adsorbed layers on a substrate under the action of an external driving force at finite temperatures, allowing for both elastic and plastic deformations. We derive general stochastic dynamical equations for the particle and momentum densities including both thermal fluctuations and inertial effects. The resulting coupled equations for the PFC model are studied numerically. At sufficiently low temperatures, we find that the velocity response of an initially pinned commensurate layer shows hysteresis with dynamical melting and freezing transitions for increasing and decreasing applied forces at different critical values. The main features of the nonlinear response in the PFC model are similar to the results obtained previously with molecular dynamics simulations of particle models for adsorbed layers.
Physical Review E 01/2010; 81(1 Pt 1):011121. · 2.26 Impact Factor
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ABSTRACT: We consider the driven diffusion of Brownian particles in 1D periodic potentials using the recently proposed Stochastic Path Integral Hyperdynamics (SPHD) scheme [L.Y. Chen and L.J.M. Horing, J. Chem. Phys. {\bf 126}, 224103 (2007)]. First, we consider the case where a single Brownian particle is moving in a spatially periodic potential and subjected to an external ac driving force. We confirm that there is no stochastic resonance in this system and find that at higher frequencies the diffusion coefficient $D$ is strongly suppressed. The second case is that of a dimer moving in a periodic potential with a static bias. For this case, there's a strong suppression of $D$ when the dimer bond length is an integer multiple of the lattice constant of the potential. For both cases, we demonstrate how the SPHD allows us to extract the dynamical information exactly at different bias levels from a single simulation run, by calculating the corresponding statistical re-weighting factors. Comment: 5 pages, 3 figures
06/2009;
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ABSTRACT: In this work, we use the first-principle density-functional approach to study the electronic structure of a H atom adsorbed on the ideal Pt(111) and vicinal Pt(211) and Pt(331) surfaces. Full three-dimensional potential-energy surfaces (3D PES's) as well as local electronic density of states on various adsorption sites are obtained. The results show that the steps modify the PES considerably. The effect is nonlocal and extends into the region of the (111) terraces. We also find that different type of steps have different kind of influence on the PES when compared to the one of the ideal Pt(111) surface. The full 3D PES's calculated in this work provide a starting point for the theoretical study of vibrational and diffusive dynamics of H adatoms adsorbed on these vicinal surfaces. Comment: 8 pages with 5 figures and 3 tables. In version 2, there have been made some minor changes and a bigger one in Section III.A.1 where the results of the test calculations dealt with the accuracy of the present results have been added
03/2009;
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ABSTRACT: We present a review of recent theoretical studies of different atomistic mechanisms of strain relaxation in heteroepitaxial systems. We explore these systems in two and three dimensions using different semi-empirical interatomic potentials of Lennard-Jones and many-body embedded atom model type. In all cases we use a universal molecular static method for generating minimum energy paths for transitions from the coherent epitaxial (defect free) state to the state containing an isolated defect (localized or extended). This is followed by a systematic search for the minimum energy configuration as well as self-organization in the case of a periodic array of islands. In this way we are able to understand many general features of the atomic mechanisms and energetics of strain relaxation in these systems. Finally, for the special case of Pd/Cu(100) and Cu/Pd(100) heteroepitaxy we also use conventional molecular dynamics simulation techniques to compare the compressively and tensilely strained cases. The results for this case are in good agreement with the existing experimental data.
Journal of Physics Condensed Matter 02/2009; 21(8):084211. · 2.55 Impact Factor
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ABSTRACT: We study numerically the phase diagram and the response under a driving force of the phase field crystal model for pinned lattice systems introduced recently for both one- and two-dimensional systems. The model describes the lattice system as a continuous density field in the presence of a periodic pinning potential, allowing for both elastic and plastic deformations of the lattice. We first present results for phase diagrams of the model in the absence of a driving force. The nonlinear response to a driving force on an initially pinned commensurate phase is then studied via overdamped dynamic equations of motion for different values of mismatch and pinning strengths. For large pinning strength the driven depinning transitions are continuous, and the sliding velocity varies with the force from the threshold with power-law exponents in agreement with analytical predictions. Transverse depinning transitions in the moving state are also found in two dimensions. Surprisingly, for sufficiently weak pinning potential we find a discontinuous depinning transition with hysteresis even in one dimension under overdamped dynamics. We also characterize structural changes of the system in some detail close to the depinning transition.
Physical Review E 02/2009; 79(1 Pt 1):011606. · 2.26 Impact Factor
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ABSTRACT: We study the dislocation formation in 2D nanoscopic islands with two methods, the Molecular Static method and the Phase Field Crystal method. It is found that both methods indicate the same qualitative stages of the nucleation process. The dislocations nucleate at the film-substrate contact point and the energy decreases monotonously when the dislocations are farther away from the island-wetting film contact points than the distance of the highest energy barrier.
01/2009;
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ABSTRACT: We study the equilibrium shape, shape transitions and optimal size of strained heteroepitaxial nanoislands with a two-dimensional atomistic model using simply adjustable interatomic pair potentials. We map out the global phase diagram as a function of substrate-adsorbate misfit and interaction. This phase diagram reveals all the phases corresponding to different well-known growth modes. In particular, for large enough misfits and attractive substrate there is a Stranski-Krastanow regime, where nano-sized islands grow on top of wetting films. We analyze the various terms contributing to the total island energy in detail, and show how the competition between them leads to the optimal shape and size of the islands. Finally, we also develop an analytic interpolation formula for the various contributions to the total energy of strained nanoislands.
01/2009;
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ABSTRACT: We study the phase diagram and the commensurate-incommensurate phase transitions of a two-dimensional phase field crystal model for adsorbed layers. The model allows for both elastic and plastic deformations on atomic and diffusive time-scales, and provides a continuum description of lattice systems, such as adsorbed atomic layers or two-dimensional vortex lattices. Analytically, mode expansion analysis and numerical minimization of the free energy are used to determine the ground states as a function of the pinning potential and lattice mismatch parameter. The results show a rich phase diagram with several different types of commensurate and incommensurate phases.
Journal of Physics Conference Series 01/2008; 100.
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ABSTRACT: We study the phase diagram and the commensurate-incommensurate transitions in a phase field model of a two-dimensional crystal lattice in the presence of an external pinning potential. The model allows for both elastic and plastic deformations and provides a continuum description of lattice systems, such as for adsorbed atomic layers or two-dimensional vortex lattices. Analytically, a mode expansion analysis is used to determine the ground states and the commensurate-incommensurate transitions in the model as a function of the strength of the pinning potential and the lattice mismatch parameter. Numerical minimization of the corresponding free energy shows reasonable agreement with the analytical predictions and provides details on the topological defects in the transition region. We find that for small mismatch the transition is of first order, and it remains so for the largest values of mismatch studied here. Our results are consistent with results of simulations for atomistic models of adsorbed overlayers.
Physical Review E 09/2006; 74(2 Pt 1):021104. · 2.26 Impact Factor
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ABSTRACT: We study numerically the equilibrium shapes, shape transitions and dislocation nucleation of small strained epitaxial islands with a two-dimensional atomistic model, using simple interatomic pair potentials. We first map out the phase diagram for the equilibrium island shapes as a function of island size (up to N = 105 atoms) and lattice misfit with the substrate and show that nanoscopic islands have four generic equilibrium shapes, in contrast with predictions from the continuum theory of elasticity. For increasing substrate-adsorbate attraction, we find islands that form on top of a finite wetting layer as observed in Stranski-Krastanow growth. We also investigate energy barriers and transition paths for transitions between different shapes of the islands and for dislocation nucleation in initially coherent islands. In particular, we find that dislocations nucleate spontaneously at the edges of the adsorbate-substrate interface above a critical size or lattice misfit.
11/2005;
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ABSTRACT: We present experimental and theoretical studies of Pd/Cu(100) and Cu/Pd(100) heterostructures in order to explore their structure and misfit strain relaxation. Ultrathin Pd and Cu films are grown by pulsed laser deposition at room temperature. For Pd/Cu, compressive strain is released by networks of misfit dislocations running in the [100] and [010] directions, which appear after a few monolayers (ML) already. In striking contrast, for Cu/Pd the tensile overlayer remains coherent up to about 9 ML, after which multilayer growth occurs. The strong asymmetry between tensile and compressive cases is in contradiction with continuum elasticity theory and is also evident in the structural parameters of the strained films. Molecular dynamics calculations based on classical many-body potentials confirm the pronounced tensile-compressive asymmetry and are in good agreement with the experimental data.
Physical Review Letters 05/2005; 94(14):146105. · 7.37 Impact Factor
