Jean Gagnon

University of Grenoble, Grenoble, Rhône-Alpes, France

Are you Jean Gagnon?

Claim your profile

Publications (108)386.26 Total impact

  • Source
    [Show abstract] [Hide abstract]
    ABSTRACT: The most prominent structural feature of the parasitophorous vacuole (PV) in which the intracellular parasite Toxoplasma gondii proliferates is a membranous nanotubular network (MNN), which interconnects the parasites and the PV membrane. The MNN function remains unclear. The GRA2 and GRA6 proteins secreted from the parasite dense granules into the PV have been implicated in the MNN biogenesis. Amphipathic alpha-helices (AAHs) predicted in GRA2 and an alpha-helical hydrophobic domain predicted in GRA6 have been proposed to be responsible for their membrane association, thereby potentially molding the MMN in its structure. Here we report an analysis of the recombinant proteins (expressed in detergent-free conditions) by circular dichroism, which showed that full length GRA2 displays an alpha-helical secondary structure while recombinant GRA6 and GRA2 truncated of its AAHs are mainly random coiled. Dynamic light scattering and transmission electron microscopy showed that recombinant GRA6 and truncated GRA2 constitute a homogenous population of small particles (6-8 nm in diameter) while recombinant GRA2 corresponds to 2 populations of particles (∼8-15 nm and up to 40 nm in diameter, respectively). The unusual properties of GRA2 due to its AAHs are discussed. Copyright © 2015. Published by Elsevier Inc.
    Biochemical and Biophysical Research Communications 02/2015; 459(1). DOI:10.1016/j.bbrc.2015.02.078 · 2.30 Impact Factor
  • [Show abstract] [Hide abstract]
    ABSTRACT: on-line protocol: Bio-protocol:
  • [Show abstract] [Hide abstract]
    ABSTRACT: Mutations within the central region of prion protein (PrP) have been shown to be associated with severe neurotoxic activity similar to that observed with Dpl, a PrP-like protein. To further investigate this neurotoxic effect, we generated lines of transgenic (Tg) mice expressing three different chimeric PrP-Dpl proteins. Chi1 (amino acids 1-57 of Dpl replaced by amino acids 1-125 of PrP) and Chi2 (amino acids 1-66 of Dpl replaced by amino acids 1-134 of PrP) abrogated the pathogenicity of Dpl indicating that the presence of a N-terminal domain of PrP (23-134) reduced the toxicity of Dpl, as reported. However, when the amino acids 1-24 of Dpl were replaced by amino acids 1-124 of PrP, Chi3 Tg mice, which express the chimeric protein at a very low level, start developing ataxia at the age of 5-7 weeks. This phenotype was not counteracted by a single copy of full-length-PrP(c) but rather by its overexpression, indicating the strong toxicity of the chimeric protein Chi3. Chi3 Tg mice exhibit severe cerebellar atrophy with a significant loss of granule cells. We concluded that aa25 to aa57 of Dpl, which are not present in Chi1 and Chi2 constructs, confer toxicity to the protein. We tested this possibility by using the 25-57 Dpl peptide in primary culture of mouse embryo cortical neurons and found a significant neurotoxic effect. This finding identifies a protein domain that plays a role in mediating Dpl-related toxicity.
    The Journal of Neuroscience : The Official Journal of the Society for Neuroscience 01/2013; 33(4):1391-9. DOI:10.1523/JNEUROSCI.2231-12.2013 · 6.34 Impact Factor

  • The Journal of Neuroscience : The Official Journal of the Society for Neuroscience 01/2013; · 6.34 Impact Factor

  • Source
    [Show abstract] [Hide abstract]
    ABSTRACT: Fatal neurodegenerative prion diseases are caused by the transmissible PrP(Sc) prion agent whose initial replication after peripheral inoculation takes place in follicular dendritic cells present in germinal centers of lymphoid organs. However, prion replication also occurs in lymphoid cells. To assess the role of the hematopoietic compartment in neuroinvasion and prion replication, we generated chimeric mice, on a uniform congenic C57/BL6J background, by bone marrow replacement with hematopoietic cells expressing different levels of PrP protein. Nine different types of chimeric mice were inoculated intraperitoneally either with the lymphotropic Rocky Mountain Laboratory (RML) strain or the non lymphotropic ME-7 scrapie strain, at different doses. Here, we clearly demonstrate that overexpression of PrP by the hematopoietic system, or the lack of PrP expression by the bone marrow derived cells, does not change the incubation time period of the disease, even when the mice are infected at limiting doses. We conclude that the hematopoietic compartment is more or less permissive to prion replication, both for RML and ME-7, but does not play a role in neuroinvasion.
    PLoS ONE 10/2010; 5(10). DOI:10.1371/journal.pone.0013166 · 3.23 Impact Factor

  • Source
    [Show abstract] [Hide abstract]
    ABSTRACT: Sex effect on the incubation period of variant Creutzfeldt-Jakob disease (vCJD) disease in human and ME-7 murine models was investigated. In the 167 vCJD cases reported in the United Kingdom as of January 2009, age at onset was significantly lower in female patients (by 2 years) than in male patients after stratification on birth cohort. In C57/Bl6N mice infected with ME-7 scrapie strain, incubation was shorter in female than in male mice. The incubation period increased in castrated male mice after intraperitoneal infection but not after intracerebral inoculation. In the absence of androgen receptors, the incubation period for prion disease increased after intraperitoneal inoculation. In ovariectomized or estrogen receptor alpha-defective female mice, no effect was observed on the incubation period of mouse prion disease. These results show that androgens influence the prion diseases incubation period after inoculation at a peripheral site.
    The Journal of Infectious Diseases 08/2010; 202(4):648-54. DOI:10.1086/654818 · 6.00 Impact Factor
  • [Show abstract] [Hide abstract]
    ABSTRACT: A growing number of studies have investigated the interaction between C1q and PrP, but the oligomeric form of PrP involved in this interaction remains to be determined. Aggregation of recombinant full-length murine PrP in the presence of 100 mm NaCl allowed us to isolate three different types of oligomers by size-exclusion chromatography. In contrast to PrP monomers and fibrils, these oligomers activate the classical complement pathway, the smallest species containing 8-15 PrP protomers being the most efficient. We used Thioflavine T fluorescence to monitor PrP aggregation and showed that, when added to the reaction, C1q has a cooperative effect on PrP aggregation and leads to the formation of C1q-PrP complexes. In these complexes, C1q interacts through its globular domains preferentially with the smallest oligomers, as shown by electron microscopy, and retains the ability to activate the classical complement pathway. Using two cell lines, we also provide evidence that C1q inhibits the cytotoxicity induced by the smallest PrP oligomers. The cooperative interaction between C1q and PrP could represent an early step in the disease, where it prevents elimination of the prion seed, leading to further aggregation.
    Journal of Biological Chemistry 06/2010; 285(25):19267-76. DOI:10.1074/jbc.M109.071860 · 4.57 Impact Factor

  • Molecular Immunology 09/2009; 46(14-14):2837. DOI:10.1016/j.molimm.2009.05.238 · 2.97 Impact Factor
  • [Show abstract] [Hide abstract]
    ABSTRACT: Clr is one of the two serine proteases of Cl, the first component of complement, in which it is associated in a calcium-dependent manner to the homologous serine protease Cls. This interaction is mediated by the N-terminal region of Clr, which comprises a single epidermal growth factor (EGF)-like module containing the consensus sequence required for calcium binding, surrounded by two CUB modules. With a view to determine the structure of the EGF-like module of Clr and evaluate its contribution to calcium binding, this module [Clr(123–175)] was synthesized by automated solid-phase methodology using the Boc strategy. A first synthesis using the Boc-His(Z) derivative gave very low yield, due to partial deprotection of His residues leading to chain termination by acetylation, and to insertion of glycine residues. This could be circumvented by using the Boc-His(DNP) derivative and by condensation of appropriate glycine-containing segments. The synthetic peptide was efficiently folded under redox conditions to the species with three correct disulfide bridges, as determined by mass spectrometry and N-terminal sequence analyses of thermolytic fragments. The homogeneity of the synthetic peptide was assessed by reversed-phase HPLC and electrospray mass spectrometry. One-dimensional 1H NMR spectroscopic analysis provided evidence that the EGF-like module had a well defined structure, and was able to bind calcium with an apparent Kd of 10 mM. This value, comparable to that found for the isolated EGF-like modules of coagulation factors IX and X, is much higher than that measured for native Clr. As already proposed for factors IX and X, it is suggested that neighbouring module(s), most probably the N-terminal CUB module, contribute(s) to the calcium binding site. © Munksgaard 1997.
    European Journal of Allergy and Clinical Immunology 01/2009; 49(3):221 - 231. DOI:10.1111/j.1399-3011.1997.tb00881.x · 1.30 Impact Factor
  • [Show abstract] [Hide abstract]
    ABSTRACT: The in vitroO-glycosylation reaction of the MUCSAC mucin motif peptide, TTSAPTTS (in one-letter code), was achieved with human gastric microsomal homogenates. The analyses using capillary electrophoresis online coupled with electrospray mass spectrometry and further Edman degradation of the purified products (obtained by capillary electrophoresis at preparative scale) allowed us to distinguish two components at close masses: the addition of a mass of 202 corresponded to an N-terminal elongation of the peptide TTSAPTTS with the dipeptide (TT) and the addition of a mass of 203 corresponded to an N-acetylgalactosamine O-linkage. Using different peptidase inhibitors, a dipeptidyl peptidase/transferase activity was further characterized. A thiol dependence and an inhibition by H-Gly-PheCHN2 (specific to cathepsin C activity) were found. Moreover, besides TTSAPTTS, other MUCSAC motif peptides (GTTPSPVP, TSAPTTS) were also dipeptide donors (GT and TS, respectively) and our results suggested the involvement of a single dipeptidyl peptidase/transferase activity. Finally, this latter activity modified the in vitro GalNAc incorporation rates when using our selected MUCSAC motif peptides. Our study therefore shows that caution must be taken to prevent peptidic substrate elongation while performing in vitroO-glycosylation with microsomal preparations as the enzyme source. In fact, the results of the N-acetylgalactosamine incorporation rates and thus the microsomal N-acetylgalactosamine transferase affinity can be misinterpreted if dipeptidyl peptidase/transferase activity is not inhibited by the thiol inhibitor E-64 or the cathepsin C inhibitor H-Gly-PheCHN2. © Munksgaard 1998.
    European Journal of Allergy and Clinical Immunology 01/2009; 51(5):346 - 354. DOI:10.1111/j.1399-3011.1998.tb01225.x · 1.30 Impact Factor
  • Source
    [Show abstract] [Hide abstract]
    ABSTRACT: Innate immunity is the major host defense against invasive aspergillosis. To determine whether the collectin mannan-binding lectin (MBL) is involved in the initial protective immunity through complement activation against opportunistic fungal infections caused by Aspergillus, we performed in vitro studies on 29 different strains of Aspergillus conidia from five different species. Incubation of Aspergillus conidia in human normal serum leads to activation of the alternative pathway, whereas neither the classical nor the lectin pathways through C4 and C2 cleavage are activated. Complement response to conidia was investigated using a MBL-deficient serum and reconstitution experiments were conducted with MBL/MASPs complexes. We found that MBL can directly support C3 activation by a C2 bypass mechanism. Finally, a stronger activation of the alternative pathway was observed for the clinical strains isolated from patients with invasive aspergillosis, compared with the environmental strains.
    The Journal of Immunology 12/2008; 181(10):7100-5. DOI:10.1016/j.molimm.2008.08.224 · 4.92 Impact Factor
  • [Show abstract] [Hide abstract]
    ABSTRACT: Transmissible spongiform encephalopathies are fatal neurodegenerative disorders thought to be transmitted by self-perpetuating conformational conversion of a neuronal membrane glycoprotein (PrP(C), for "cellular prion protein") into an abnormal state (PrP(Sc), for "scrapie prion protein"). Doppel (Dpl) is a protein that shares significant biochemical and structural homology with PrP(C). In contrast to its homologue PrP(C), Dpl is unable to participate in prion disease progression or to achieve an abnormal PrP(Sc)-like state. We have constructed a chimeric mouse protein, composed of the N-terminal domain of PrP(C) (residues 23-125) and the C-terminal part of Dpl (residues 58-157). This chimeric protein displays PrP-like biochemical and structural features; when incubated in presence of NaCl, the alpha-helical monomer forms soluble beta-sheet-rich oligomers which acquire partial resistance to pepsin proteolysis in vitro, as do PrP oligomers. Moreover, the presence of aggregates akin to protofibrils is observed in soluble oligomeric species by electron microscopy.
    Biochemical and Biophysical Research Communications 02/2008; 365(3):478-83. DOI:10.1016/j.bbrc.2007.10.202 · 2.30 Impact Factor
  • Source
    [Show abstract] [Hide abstract]
    ABSTRACT: Mice defective for C1q complement factor show enhanced resistance to peripheral prion inoculation, and previous work demonstrated a direct interaction between C1q and conformationally modified PrP. However, the nature and physiological consequences of this interaction remain uncharacterized. PrP amino acids 141-159 has been identified as a potential C1q binding site; we show, by both surface plasmon resonance (SPR) spectroscopy and ELISA, that C1q and its globular region bind to PrP mutagenized in the region of interest with comparable efficiency to that of wild-type protein. To test PrP's ability to activate complement, soluble oligomers of the PrP constructs were made. Only PrP and mutagenized PrP oligomers activate the classical complement cascade while PrP monomer and the C-terminal domain, both in oligomeric and in monomeric form, failed to induce activation. This suggests that a conformational change in PrP, which occurs both when PrP is bound to an SPR sensor chip and when it undergoes oligomerization, is requisite for PrP/C1q interaction and activation of the complement cascade. We propose that C1q may act as a natural sensor for prions, leading to activation of the classical complement cascade, which could result in local inflammation and subsequent recruitment of the immune cells that prions initially infect.
    Cellular Microbiology 01/2008; 9(12):2870-9. DOI:10.1111/j.1462-5822.2007.01002.x · 4.92 Impact Factor

  • Molecular Immunology 09/2007; 44(16):3916-3916. DOI:10.1016/j.molimm.2007.06.023 · 2.97 Impact Factor
  • Source
    [Show abstract] [Hide abstract]
    ABSTRACT: The binding of proteins to glycosaminoglycans (GAGs) is the prerequisite for a large number of cellular processes and regulatory events and is associated to many pathologies. However, progress in the understanding of these mechanisms has been hampered by the lack of simple and comprehensive analytical tools for the identification of the structural attributes involved in protein/saccharide interaction. Characterization of GAG binding motifs on proteins has so far relied on site-directed mutagenesis studies, protein sequence mapping using synthetic peptides, molecular modeling, or structural analysis. Here, we report the development of a novel approach for identifying protein residues involved in the binding to heparin, the archetypal member of the GAG family. This method, which uses native proteins, is based on the formation of cross-linked complexes of the protein of interest with heparin beads, the proteolytic digestion of these complexes, and the subsequent identification of the heparin binding containing peptides by N terminus sequencing. Analysis of the CC chemokine regulated on activation, normal T-cell expressed, and secreted (RANTES), the envelope glycoprotein gC from pseudorabies virus and the laminin-5 alpha 3LG4/5 domain validated the techniques and provided novel information on the heparin binding motifs present within these proteins. Our results highlighted this method as a fast and valuable alternative to existing approaches. Application of this technique should greatly contribute to facilitate the structural study of protein/GAG interactions and the understanding of their biological functions.
    Journal of Biological Chemistry 01/2005; 279(52):54327-33. DOI:10.1074/jbc.M409760200 · 4.57 Impact Factor
  • [Show abstract] [Hide abstract]
    ABSTRACT: Introduction Heparan sulfate (HS) is a cell surface and basement membrane, sulfated polysaccharide involved in a huge array of biological processes, such as cell proliferation, chemo-attraction, inflammation, matrix assembly, embryo development or viral attachment. These multiple functions stem from HS ability to bind and modulate the activity of a large number of proteins. The interaction of HS with its ligands is primarily, although not exclusively, of an electrostatic nature and involves the recognition of basic domains on the protein by specific motifs of the polysaccharide. Importantly, subtle differences in HS structure have been shown to dramatically affect the polysaccharide activity, as observed for HS regulation of bFGF signalling. Therefore, the identification of both protein and saccharide structural determinants implicated in HS/protein binding is critical for understanding the biological role of the interaction. In this study, we have developed a simple technique enabling the identification of HS-binding sites on proteins. Materials and methods Briefly, proteins were immobilized on heparin beads, using an adapted protocol of a zero-length two-step cross-linking method and submitted to proteolytic digestion. Peptides retained on beads, i.e. containing amino acids involved in heparin binding, were then identified by solid phase N-terminus protein sequencing performed directly on the heparin beads. Results This technique was used to analyse a number of HS protein ligands, including the envelope protein gC of a herpes virus (pseudorabies) and the chemokine RANTES. Results obtained pinpointed residues known to be critical for HS binding and thus validate the method. Conclusion This technique constitutes a novel tool that should greatly facilitate HS binding site cartography of the ever-expanding family of heparin-binding proteins and provides an attractive alternative to more complex approaches such as site-directed mutagenesis.
    International Journal of Experimental Pathology 08/2004; 85(4). DOI:10.1111/j.0959-9673.2004.390aq.x · 2.17 Impact Factor
  • [Show abstract] [Hide abstract]
    ABSTRACT: Heme catalases are homotetrameric enzymes with a highly conserved complex quaternary structure, and their functional role is still not well understood. Proteus mirabilis catalase (PMC), a heme enzyme belonging to the family of NADPH-binding catalases, was efficiently overexpressed in E. coli. The recombinant catalase (rec PMC) was deficient in heme with one-third heme and two-thirds protoporphyrin IX as determined by mass spectrometry and chemical methods. This ratio was influenced by the expression conditions, but the enzyme-specific activity calculated relative to the heme content remained unchanged. The crystal structure of rec PMC was solved to a resolution of 2.0 A, the highest resolution obtained to date with PMC. The overall structure was quite similar to that of wild-type PMC, and it is surprising that the absence of iron had no effect on the structure of the active site. Met 53 close to the essential His 54 was found less oxidized in rec PMC than in the wild-type enzyme. An acetate anion was modeled in an anionic pocket, away from the heme group but important for the enzymatic reaction. An alternate conformation observed for Arg 99 could play a role in the formation of the H-bond network connecting two symmetrical subunits of the tetramer.
    Proteins Structure Function and Bioinformatics 02/2002; 50(2):261-71. DOI:10.1002/prot.10283 · 2.63 Impact Factor

Publication Stats

3k Citations
386.26 Total Impact Points


  • 2013-2015
    • University of Grenoble
      Grenoble, Rhône-Alpes, France
  • 2007-2010
    • University Joseph Fourier - Grenoble 1
      • Laboratoire Adaptation et Pathogénie des Microorganismes
      Grenoble, Rhone-Alpes, France
  • 1995-2010
    • French National Centre for Scientific Research
      Lutetia Parisorum, Île-de-France, France
    • Cea Leti
      Grenoble, Rhône-Alpes, France
  • 2001
    • Université de Montpellier
      • Centre de Biochimie Structurale (CBS)
      Montpelhièr, Languedoc-Roussillon, France
  • 1995-1999
    • Institut de Biologie Structurale (IBS)
      Lutetia Parisorum, Île-de-France, France
  • 1987-1991
    • Unité Inserm U1077
      Caen, Lower Normandy, France
  • 1981-1986
    • University of Oxford
      • Department of Biochemistry
      Oxford, England, United Kingdom